BAC Information

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BAC

Clone NameB6Ng01-232C12
Chromosome13 (Build37)
Map Location 103,856,140 - 103,983,705
singlet/doubletdoublet
Overlap geneMast4, EG621312
Upstream geneCd180
Downstream geneEG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232C12.bB6Ng01-232C12.g
ACCGA044563GA044564
length1,0671,168
definitionB6Ng01-232C12.b B6Ng01-232C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,982,650 - 103,983,705)(103,856,140 - 103,857,304)
sequence
gaattccctatctgggtgagtaggcttctgagttgcatctttccaggaaa
agtttttgccgcacaacaccctcaggtgcttgcaattcagcacatcatga
ctttaggatgaagtcatggaaaataggtgggttagaaataaagtaaggct
gtgtccgtattttcttcctctctcctttccttgtgctccttcccttcctc
caatccattttcactccttccctgctgaattctcgtaggctgaaatgtgc
cttctcattttaagactcctttctctctgcagggtatgtctagctattag
aaatccagaaaacatcgttactctcgggcaaggaagaataaccttcagcc
tggagacagtgcttctccagcgtgcctcgggtcatcctgggtgactgtac
tgtaggccatttcctcatcacagcaggagtcttgctctcaaccgtttcct
atcccctctgtctcaagtcctgtttctctatgaatagaagaatttagcca
aagatttatctctaagtctctggactttctgattgagactaagtggattc
agagatttgggggtcttgttatttggaggagtcctgtagtagcactttca
gagacgatggggatattatgattttcaatggtctggtacagtagccacta
gccacatgtggctctgtgctcttgaatgagattggtacaactcagaaccg
aatttctaatttaaagttaaccagccacatgtgctcaggctcctgcactg
ggtacagagtctggggagctggaaaatgcgctggttttgtgactctccca
ctccggttctctgtgtgtcctgactgtgcccacctgcttcaccacccttc
tttgcccctttcatttggctcattccttaggtcaccaatttgacacctgt
cagcatttccatgcctttgcccttatggccctttcggagggtctctgctc
tgcacttgaatattgttttcctgtaagaacagtgcagatgttaagaaaga
tttttttaaatccctcattgcctcaccctctgttcatttatgttatacct
tctggacagcactaaat
gaattccaagacctcgcctagaagccagcacagcactgtacggttcataa
atgagcacatccagttattgagttcatgtcatagttcaattttcctacag
gcttcaaaatatttgtgtttggggattcacagtattgacaactacttaga
aaatattgctgcttacagttgtccatagagaaacatggcttttgccacat
tctacccgtcagtcaatgatcctttgttagagcatttcagaacattatat
attgattcaaattaatgaattttatgtcaaaggccagttaacatatttta
ccatagacaataagtttatggatgtaattactgatggagttccaaaacaa
gcacgattatgctccagcacatatgtcaacccacttaagtccattcaatt
taggaaaaaaaaaaaaacaaaactaatgaaatcacatgccacacattttt
aatgagaaaaattacgagatacctaaattaaaagaaccaattttccacag
ggaaatctggggggaaagtgttttaggtaaaccaattttctgaaggcaaa
ataaaaatttcaacaccgctccgagttgtacccaaagcaaattactgcca
gcaagcaataaggctctgataatgagacctgattagggttgaaattaagc
aggagatacagcagactcctccgagctgttttgatggagttcatcaggtt
agcaggcatgaggtgaatgaccaggctcccaggaaagggtagcagcccag
ctttgcagactaggagaggctgctgtttaaatggcctcacatctggcagg
tgcccatcacatgggttcatttataaaagggattacctacccccacacat
acaccccatttggaattactgagtgtttgacatggtgctaacagtatcat
gaccattgaatcttctaccaggagcctaggcagtgtgtgtactcacaggg
gtcttcttgtcttctcccacttataaatgaaggccttaagtatttaggaa
gattgttcaaacttcacaacacattaaacagtacacaagagaattacacc
gcatgttcagaaccacactgttattcatttgatctctagtctttttgtta
aaaccattttgactgtgaatgaaccgaaaaaatgaaacacggatttgctt
ccaggagagtctttatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103982650_103983705
seq2: B6Ng01-232C12.b_45_1111 (reverse)

seq1  ATTTA-TGCTGT-CAGAAGG-ATAACATAAATGACAGGAGGGTTGAGC-A  46
      ||||| |||||| ||||||| |||||||||||||   ||||||   || |
seq2  ATTTAGTGCTGTCCAGAAGGTATAACATAAATGAACAGAGGGTGAGGCAA  50

seq1  TGAGGGATTTAAAAAAATCCTTTCTCACATCCTGCACTG-TCTTCCAGG-  94
      ||||||||||||||||||| ||  | |||| |||||||| |||| |||| 
seq2  TGAGGGATTTAAAAAAATCTTTCTTAACAT-CTGCACTGTTCTTACAGGA  99

seq1  AAACAATATTCAAGTGCAGAGCAGAGACCCTCCG-AAGGGCCATAAGGGC  143
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAACAATATTCAAGTGCAGAGCAGAGACCCTCCGAAAGGGCCATAAGGGC  149

seq1  -AAGGCATGG-AATGCTGACAGGTGTCAAATT-GTGACCTAAGGAATGAG  190
       ||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  AAAGGCATGGAAATGCTGACAGGTGTCAAATTGGTGACCTAAGGAATGAG  199

seq1  CCAAATG-AAGGGGCAAAGAAGGGTGGTGAAGCAGGTGGGCACAGTCAGG  239
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAAAGGGGCAAAGAAGGGTGGTGAAGCAGGTGGGCACAGTCAGG  249

seq1  ACACACAGAGAACCGGAGTGGGAGAGTCAC-AAACCAGCGCATTTTCCAG  288
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACACACAGAGAACCGGAGTGGGAGAGTCACAAAACCAGCGCATTTTCCAG  299

seq1  CTCCCCAGACTCTGTACCCAGTGCAGGAGCCTGAGCACATGTGGCTGGTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGACTCTGTACCCAGTGCAGGAGCCTGAGCACATGTGGCTGGTT  349

seq1  AACTTTAAATTAGAAATTCGGTTCTGAGTTGTACCAATCTCATTCAAGAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAATTAGAAATTCGGTTCTGAGTTGTACCAATCTCATTCAAGAG  399

seq1  CACAGAGCCACATGTGGCTAGTGGCTACTGTACCAGACCATTGAAAATCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCCACATGTGGCTAGTGGCTACTGTACCAGACCATTGAAAATCA  449

seq1  TAATATCCCCATCGTCTCTGAAAGTGCTACTACAGGACTCCTCCAAATAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCCCATCGTCTCTGAAAGTGCTACTACAGGACTCCTCCAAATAA  499

seq1  CAAGACCCCCAAATCTCTGAATCCACTTAGTCTCAATCAGAAAGTCCAGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCCCCAAATCTCTGAATCCACTTAGTCTCAATCAGAAAGTCCAGA  549

seq1  GACTTAGAGATAAATCTTTGGCTAAATTCTTCTATTCATAGAGAAACAGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAGATAAATCTTTGGCTAAATTCTTCTATTCATAGAGAAACAGG  599

seq1  ACTTGAGACAGAGGGGATAGGAAACGGTTGAGAGCAAGACTCCTGCTGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGACAGAGGGGATAGGAAACGGTTGAGAGCAAGACTCCTGCTGTG  649

seq1  ATGAGGAAATGGCCTACAGTACAGTCACCCAGGATGACCCGAGGCACGCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAATGGCCTACAGTACAGTCACCCAGGATGACCCGAGGCACGCT  699

seq1  GGAGAAGCACTGTCTCCAGGCTGAAGGTTATTCTTCCTTGCCCGAGAGTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCACTGTCTCCAGGCTGAAGGTTATTCTTCCTTGCCCGAGAGTA  749

seq1  ACGATGTTTTCTGGATTTCTAATAGCTAGACATACCCTGCAGAGAGAAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTTTTCTGGATTTCTAATAGCTAGACATACCCTGCAGAGAGAAAG  799

seq1  GAGTCTTAAAATGAGAAGGCACATTTCAGCCTACGAGAATTCAGCAGGGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAAAATGAGAAGGCACATTTCAGCCTACGAGAATTCAGCAGGGA  849

seq1  AGGAGTGAAAATGGATTGGAGGAAGGGAAGGAGCACAAGGAAAGGAGAGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAAAATGGATTGGAGGAAGGGAAGGAGCACAAGGAAAGGAGAGA  899

seq1  GGAAGAAAATACGGACACAGCCTTACTTTATTTCTAACCCACCTATTTTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAATACGGACACAGCCTTACTTTATTTCTAACCCACCTATTTTC  949

seq1  CATGACTTCATCCTAAAGTCATGATGTGCTGAATTGCAAGCACCTGAGGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCATCCTAAAGTCATGATGTGCTGAATTGCAAGCACCTGAGGG  999

seq1  TGTTGTGCGGCAAAAACTTTTCCTGGAAAGATGCAACTCAGAAGCCTACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCGGCAAAAACTTTTCCTGGAAAGATGCAACTCAGAAGCCTACT  1049

seq1  CACCCAGATAGGGAATTC  1056
      ||||||||||||||||||
seq2  CACCCAGATAGGGAATTC  1067

seq1: chr13_103856140_103857304
seq2: B6Ng01-232C12.g_67_1234

seq1  GAATTCCAAGACCTCGCCTAGAAGCCAGCACAGCACTGTACGGTTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACCTCGCCTAGAAGCCAGCACAGCACTGTACGGTTCATAA  50

seq1  ATGAGCACATCCAGTTATTGAGTTCATGTCATAGTTCAATTTTCCTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACATCCAGTTATTGAGTTCATGTCATAGTTCAATTTTCCTACAG  100

seq1  GCTTCAAAATATTTGTGTTTGGGGATTCACAGTATTGACAACTACTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAATATTTGTGTTTGGGGATTCACAGTATTGACAACTACTTAGA  150

seq1  AAATATTGCTGCTTACAGTTGTCCATAGAGAAACATGGCTTTTGCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGCTGCTTACAGTTGTCCATAGAGAAACATGGCTTTTGCCACAT  200

seq1  TCTACCCGTCAGTCAATGATCCTTTGTTAGAGCATTTCAGAACATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCGTCAGTCAATGATCCTTTGTTAGAGCATTTCAGAACATTATAT  250

seq1  ATTGATTCAAATTAATGAATTTTATGTCAAAGGCCAGTTAACATATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCAAATTAATGAATTTTATGTCAAAGGCCAGTTAACATATTTTA  300

seq1  CCATAGACAATAAGTTTATGGATGTAATTACTGATGGAGTTCCAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGACAATAAGTTTATGGATGTAATTACTGATGGAGTTCCAAAACAA  350

seq1  GCACGATTATGCTCCAGCACATATGTCAACCCACTTAAGTCCATTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATTATGCTCCAGCACATATGTCAACCCACTTAAGTCCATTCAATT  400

seq1  TAGGAAAAAAAAAAAAACAAAACTAATGAAATCACATGCCACACATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAAAAAAAAAAACAAAACTAATGAAATCACATGCCACACATTTTT  450

seq1  AATGAGAAAAATTACGAGATACCTAAATTAAAAGAACCAATTTTCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAAATTACGAGATACCTAAATTAAAAGAACCAATTTTCCACAG  500

seq1  GGAAATCTGGGGGGAAAGTGTTTTAGGTAAACCAATTTTCTGAAGGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTGGGGGGAAAGTGTTTTAGGTAAACCAATTTTCTGAAGGCAAA  550

seq1  ATAAAAATTTCAACACCGCTCCGAGTTGTACCCAAAGCAAATTACTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTCAACACCGCTCCGAGTTGTACCCAAAGCAAATTACTGCCA  600

seq1  GCAAGCAATAAGGCTCTGATAATGAGACCTGATTAGGGTTGAAATTAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAATAAGGCTCTGATAATGAGACCTGATTAGGGTTGAAATTAAGC  650

seq1  AGGAGATACAGCAGACTCCTCCGAGCTGTTTTGATGGAGTTCATCAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATACAGCAGACTCCTCCGAGCTGTTTTGATGGAGTTCATCAGGTT  700

seq1  AGCAGGCATGAGGTGAATGACCAGGCTCCCAGGAAAGGGTAGCAGCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCATGAGGTGAATGACCAGGCTCCCAGGAAAGGGTAGCAGCCCAG  750

seq1  CTTTGCAGACTAGGAGAGGCTGCTGTTTAAATGGCCTCACATCTGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGACTAGGAGAGGCTGCTGTTTAAATGGCCTCACATCTGGCAGG  800

seq1  TGCCCATCACATGGGTTCATTTATAAAAGGGATTACCTACCCCCACACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCACATGGGTTCATTTATAAAAGGGATTACCTACCCCCACACAT  850

seq1  ACACCCCA-TTGGAATTACTGAGTGTTTGACATGGTGCTAACAGTATCAT  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCATTTGGAATTACTGAGTGTTTGACATGGTGCTAACAGTATCAT  900

seq1  GACCATTGAATCTTCTACCAGGAGCCTAGGCAGTGTGTGTACTCACAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GACCATTGAATCTTCTACCAGGAGCCTAGGCAGTGTGTGTACTCACA-GG  949

seq1  GGTCTTCTTGTC-TCTCCCACTTATAAATG-AGGCCTT-AGTATTTA-GA  995
      |||||||||||| ||||||||||||||||| ||||||| |||||||| ||
seq2  GGTCTTCTTGTCTTCTCCCACTTATAAATGAAGGCCTTAAGTATTTAGGA  999

seq1  AGAT--GTCAAACTTCAC-ACACATTAAACAAGTACAC-AGAGAATTACA  1041
      ||||   ||||||||||| ||||||||||| ||||||| |||||||||||
seq2  AGATTGTTCAAACTTCACAACACATTAAAC-AGTACACAAGAGAATTACA  1048

seq1  -CGCATGTTCAG-ACCACACTGTTAATCATTTTGGTCTCTAGTC-TTTTG  1088
       ||||||||||| |||||||||||| ||| |||| ||||||||| |||||
seq2  CCGCATGTTCAGAACCACACTGTTATTCA-TTTGATCTCTAGTCTTTTTG  1097

seq1  TTAAAACCCATTTTGACTGGAGAATGAAACAGAAAATAGAAACA-GTATT  1137
      |||||| ||||||||||| | ||||||| |  ||||  |||||| | |||
seq2  TTAAAA-CCATTTTGACT-GTGAATGAACCGAAAAAATGAAACACGGATT  1145

seq1  TTGGCTTCCCCAAGAGAGTTCTTTATGG  1165
      |  ||||  ||| ||||| |||||||||
seq2  T--GCTT--CCAGGAGAG-TCTTTATGG  1168