BAC Information

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BAC

Clone NameB6Ng01-232J17
Chromosome13 (Build37)
Map Location 58,188,625 - 58,362,193
singlet/doubletdoublet
Overlap geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1
Upstream geneLOC100040995, Spock1
Downstream geneKif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232J17.bB6Ng01-232J17.g
ACCGA044900GA044901
length1,0671,120
definitionB6Ng01-232J17.b B6Ng01-232J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,361,143 - 58,362,193)(58,188,625 - 58,189,729)
sequence
gaattcactctgtagaccaggctggccttgaactcagaaatccaatgcct
ctgcctcccaagtgctgggagaaattgatttatactttctttttttaatg
tggcaaatatacataaattttaattttagtttattattttttattatcca
tataatgacttggggggttaaagtatgtatggggatttagcctgtatgta
catagtgtatcacatgtgtacctgtgcttactgaagccagaagagggtat
tttatcctctggaactggaatgagccatcatgtgtgtgctggtaatgggt
tttctgcaagagcagccagggctcatcaccactgagccacctcccaggct
cctaggattaaattgtaaagtgcctttcctgctagtagttaatacttctc
agtcccctaggcttattgtatggattgtagtttattgtgggcttccttag
attgttgttgcacgcagtttcctttaccagtttaattctcattgaatttc
agttcttgcttttctgtgtaaagctaacttgttctactgtttctagtctt
ggcaaaggattaagtgagatgctttttaaaggggtcgctccacttagaaa
gtttaatttgtagagtttgatgttaacagttttctaagttttaagatagc
ctttacccattccctttcacattggtttctatcttagtctgaatatttta
aaacattaaacagcataacaattcttaataacttgggcaaaaatgtattg
aggagtaattaaaacctgaagacttaggccgtaggaaagatggaaactag
caagttctgggacactccaaggcgaggctagcagacagcacatgtggggg
tgacttgtcgggtgggttaccttccttatctggaagacagtgcctagaag
actgggaaaagacctggctccaccacgcttccctgcctgtcactgctggt
cactccagcctggctgttcatatggcatcgtgttagaatgggttgggggt
ggctttacctgtcctggttgaatccccagatatcagaatattttattcac
agtaattaaaggatttt
gaattcaggcctggtgttgcacacttggtcaaaagccctggctcaggagg
ccatgagctttaggagggcacccactattattggcttgctagatggcatg
cagtcccacagcctacatgcatacttataaccactgttcaatgctaccat
caaccttggtctgagaaccttttcactacaatggcaaggacttaatgcac
agactcataactgccattgctgagaataagtgtctaccgagcgttgaccc
ctaaaagggacatgtgtatcagtccccagctggaggctcaggaacgtcat
agaaaacagatggaaagaatctaagagctggaggctgggaagcgctctgt
gacattctgtcgtcaggatgcaggcacggccctcactcttgtgaactctg
cagctatgattagccgcacaggactgaatcagagaggtaagtcaacactt
ggacaagaagcagttatcagccaaaaaaaggagaggacagaaaggagagc
tgggggcatgctggggtgcttgggagttggaaggggagtttgggtgtaca
tatgatcaagaaacattgtttgaatgtatgaaattatcaaaaagttaaag
atagtctattaaaaacaagatggagaatgattaagggagatagatgccca
acactgagttcttggcctccccatggatgcacacacatgtacatgagcct
ctgcatgcacacacacacacaccagaacccctctatcctttttacctggc
agtcacccctacttcgctgtgaacttggaaaagtgttgcagtaaatctct
tccaccccaattatgccccagcaataaaaaactcaacacaattaaatatg
aatacacgctgtgcaacttaggacttgggcagattctaccgctatactac
ccattctttccacatctatgagaacccctttagaacttgggggttcctca
ggccatggtgcttcctgcttctgctttttcttcttcctcaccctcttctg
caatcccttccctctatccattttcaaccttctttctctcccacttccct
ttatctgctcaatcacagcttctctttatttcacaaattaagggggaaac
cggcttaatagaaatccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58361143_58362193
seq2: B6Ng01-232J17.b_42_1108 (reverse)

seq1  AAAATCCTTT-ATTACTGTGAATAAAATATTCTGATATCT-GTGATTCAA  48
      |||||||||| ||||||||||||||||||||||||||||| | |||||||
seq2  AAAATCCTTTAATTACTGTGAATAAAATATTCTGATATCTGGGGATTCAA  50

seq1  -CAGGACAGCTAA--GCACCCC--AACCATTCTAACACGATGCCATATGA  93
       |||||||| |||   ||||||  | ||||||||||||||||||||||||
seq2  CCAGGACAGGTAAAGCCACCCCCAACCCATTCTAACACGATGCCATATGA  100

seq1  ACAGCCAGGCT-GAGTGACCAGCAGTGACAGGCAGGG-AGCGTGGT-GAG  140
      ||||||||||| ||||||||||||||||||||||||| |||||||| |||
seq2  ACAGCCAGGCTGGAGTGACCAGCAGTGACAGGCAGGGAAGCGTGGTGGAG  150

seq1  CCAGGTCTTTT-CCAGTCTTCTAGGCACTGTCTT-CAGAT-AGGAAGGT-  186
      ||||||||||| |||||||||||||||||||||| ||||| |||||||| 
seq2  CCAGGTCTTTTCCCAGTCTTCTAGGCACTGTCTTCCAGATAAGGAAGGTA  200

seq1  ACCCACCCGAC-AGTCA-CCCCACATGTGCTGTCTGCTAGCCTCGCCTTG  234
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  ACCCACCCGACAAGTCACCCCCACATGTGCTGTCTGCTAGCCTCGCCTTG  250

seq1  GAGTGTCCCAGAACTTGCTAGTTTCCATCTTTCCTACGGCCTAAGTCTTC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCCAGAACTTGCTAGTTTCCATCTTTCCTACGGCCTAAGTCTTC  300

seq1  AGGTTTTAATTACTCCTCAATACATTTTTGCCCAAGTTATTAAGAATTGT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTAATTACTCCTCAATACATTTTTGCCCAAGTTATTAAGAATTGT  350

seq1  TATGCTGTTTAATGTTTTAAAATATTCAGACTAAGATAGAAACCAATGTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTTTAATGTTTTAAAATATTCAGACTAAGATAGAAACCAATGTG  400

seq1  AAAGGGAATGGGTAAAGGCTATCTTAAAACTTAGAAAACTGTTAACATCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAATGGGTAAAGGCTATCTTAAAACTTAGAAAACTGTTAACATCA  450

seq1  AACTCTACAAATTAAACTTTCTAAGTGGAGCGACCCCTTTAAAAAGCATC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACAAATTAAACTTTCTAAGTGGAGCGACCCCTTTAAAAAGCATC  500

seq1  TCACTTAATCCTTTGCCAAGACTAGAAACAGTAGAACAAGTTAGCTTTAC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAATCCTTTGCCAAGACTAGAAACAGTAGAACAAGTTAGCTTTAC  550

seq1  ACAGAAAAGCAAGAACTGAAATTCAATGAGAATTAAACTGGTAAAGGAAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGCAAGAACTGAAATTCAATGAGAATTAAACTGGTAAAGGAAA  600

seq1  CTGCGTGCAACAACAATCTAAGGAAGCCCACAATAAACTACAATCCATAC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGCAACAACAATCTAAGGAAGCCCACAATAAACTACAATCCATAC  650

seq1  AATAAGCCTAGGGGACTGAGAAGTATTAACTACTAGCAGGAAAGGCACTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCTAGGGGACTGAGAAGTATTAACTACTAGCAGGAAAGGCACTT  700

seq1  TACAATTTAATCCTAGGAGCCTGGGAGGTGGCTCAGTGGTGATGAGCCCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTAATCCTAGGAGCCTGGGAGGTGGCTCAGTGGTGATGAGCCCT  750

seq1  GGCTGCTCTTGCAGAAAACCCATTACCAGCACACACATGATGGCTCATTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCTTGCAGAAAACCCATTACCAGCACACACATGATGGCTCATTC  800

seq1  CAGTTCCAGAGGATAAAATACCCTCTTCTGGCTTCAGTAAGCACAGGTAC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGAGGATAAAATACCCTCTTCTGGCTTCAGTAAGCACAGGTAC  850

seq1  ACATGTGATACACTATGTACATACAGGCTAAATCCCCATACATACTTTAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGATACACTATGTACATACAGGCTAAATCCCCATACATACTTTAA  900

seq1  CCCCCCAAGTCATTATATGGATAATAAAAAATAATAAACTAAAATTAAAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAGTCATTATATGGATAATAAAAAATAATAAACTAAAATTAAAA  950

seq1  TTTATGTATATTTGCCACATTAAAAAAAGAAAGTATAAATCAATTTCTCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATATTTGCCACATTAAAAAAAGAAAGTATAAATCAATTTCTCC  1000

seq1  CAGCACTTGGGAGGCAGAGGCATTGGATTTCTGAGTTCAAGGCCAGCCTG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGGCATTGGATTTCTGAGTTCAAGGCCAGCCTG  1050

seq1  GTCTACAGAGTGAATTC  1051
      |||||||||||||||||
seq2  GTCTACAGAGTGAATTC  1067

seq1: chr13_58188625_58189729
seq2: B6Ng01-232J17.g_69_1188

seq1  GAATTCAGGCCTGGTGTTGCACACTTGGTCAAAAGCCCTGGCTCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCTGGTGTTGCACACTTGGTCAAAAGCCCTGGCTCAGGAGG  50

seq1  CCATGAGCTTTAGGAGGGCACCCACTATTATTGGCTTGCTAGATGGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGCTTTAGGAGGGCACCCACTATTATTGGCTTGCTAGATGGCATG  100

seq1  CAGTCCCACAGCCTACATGCATACTTATAACCACTGTTCAATGCTACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCACAGCCTACATGCATACTTATAACCACTGTTCAATGCTACCAT  150

seq1  CAACCTTGGTCTGAGAACCTTTTCACTACAATGGCAAGGACTTAATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGGTCTGAGAACCTTTTCACTACAATGGCAAGGACTTAATGCAC  200

seq1  AGACTCATAACTGCCATTGCTGAGAATAAGTGTCTACCGAGCGTTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATAACTGCCATTGCTGAGAATAAGTGTCTACCGAGCGTTGACCC  250

seq1  CTAAAAGGGACATGTGTATCAGTCCCCAGCTGGAGGCTCAGGAACGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGGACATGTGTATCAGTCCCCAGCTGGAGGCTCAGGAACGTCAT  300

seq1  AGAAAACAGATGGAAAGAATCTAAGAGCTGGAGGCTGGGAAGCGCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGATGGAAAGAATCTAAGAGCTGGAGGCTGGGAAGCGCTCTGT  350

seq1  GACATTCTGTCGTCAGGATGCAGGCACGGCCCTCACTCTTGTGAACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTGTCGTCAGGATGCAGGCACGGCCCTCACTCTTGTGAACTCTG  400

seq1  CAGCTATGATTAGCCGCACAGGACTGAATCAGAGAGGTAAGTCAACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGATTAGCCGCACAGGACTGAATCAGAGAGGTAAGTCAACACTT  450

seq1  GGACAAGAAGCAGTTATCAGCCAAAAAAAGGAGAGGACAGAAAGGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAAGCAGTTATCAGCCAAAAAAAGGAGAGGACAGAAAGGAGAGC  500

seq1  TGGGGGCATGCTGGGGTGCTTGGGAGTTGGAAGGGGAGTTTGGGTGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCATGCTGGGGTGCTTGGGAGTTGGAAGGGGAGTTTGGGTGTACA  550

seq1  TATGATCAAGAAACATTGTTTGAATGTATGAAATTATCAAAAAGTTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCAAGAAACATTGTTTGAATGTATGAAATTATCAAAAAGTTAAAG  600

seq1  ATAGTCTATTAAAAACAAGATGGAGAATGATTAAGGGAGATAGATGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTATTAAAAACAAGATGGAGAATGATTAAGGGAGATAGATGCCCA  650

seq1  ACACTGAGTTCTTGGCCTCCCCATGGATGCACACACATGTACATGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTTCTTGGCCTCCCCATGGATGCACACACATGTACATGAGCCT  700

seq1  CTGCATGCACACACACACACACCAGAA-CCCTCTATCC-TTTTACCTGGC  748
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTGCATGCACACACACACACACCAGAACCCCTCTATCCTTTTTACCTGGC  750

seq1  AGTCACCCCTACTTCGCTGTGAACTTGGAAAAGTGTTGCAGTAAATCTC-  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTCACCCCTACTTCGCTGTGAACTTGGAAAAGTGTTGCAGTAAATCTCT  800

seq1  TCCAACCCAATTATGCCCCAGCAAT-AAAAACTCAACACAATT-AATATG  845
      |||| |||||||||||||||||||| ||||||||||||||||| ||||||
seq2  TCCACCCCAATTATGCCCCAGCAATAAAAAACTCAACACAATTAAATATG  850

seq1  AATACACGCTGTGCACCT--AGACTT-GGCAGA-TCTACCGCTATACTA-  890
      ||||||||||||||| ||   ||||| |||||| ||||||||||||||| 
seq2  AATACACGCTGTGCAACTTAGGACTTGGGCAGATTCTACCGCTATACTAC  900

seq1  CCAT--CTTCCACATCTATGAGA--CCCCTTAGAACTTGGGGTTTCTCCA  936
      ||||   ||||||||||||||||  ||| ||||||||||||| |||  ||
seq2  CCATTCTTTCCACATCTATGAGAACCCCTTTAGAACTTGGGGGTTCCTCA  950

seq1  GGCCAT-GTGCTT-CTGC-TCTGC-TTTTCTTCTTCCTCACCCTCCTCTG  982
      |||||| |||||| |||| ||||| |||||||||||||||||||| ||||
seq2  GGCCATGGTGCTTCCTGCTTCTGCTTTTTCTTCTTCCTCACCCTCTTCTG  1000

seq1  C-ATCCTCTCCCTCT-TCCATTTTC-ACCTTCTTCTCTCTCCCACCTTCC  1029
      | ||||  ||||||| ||||||||| |||||||| ||||||||| |||||
seq2  CAATCCCTTCCCTCTATCCATTTTCAACCTTCTT-TCTCTCCCA-CTTCC  1048

seq1  CTTTTATCTGCTCAATCATCAGCTCTCCTTTATTTTACAAATTAAGGTGG  1079
      | |||||||||||||||| |||||   |||||||| ||||||||||| ||
seq2  C-TTTATCTGCTCAATCA-CAGCTTCTCTTTATTTCACAAATTAAGG-GG  1095

seq1  GAACCAGGCTTATAGGAAATCACCTG  1105
      ||| | ||||||   |||||| ||||
seq2  GAAACCGGCTTAATAGAAATC-CCTG  1120