BAC Information

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BAC

Clone NameB6Ng01-232M10
Chromosome13 (Build37)
Map Location 63,978,406 - 64,086,991
singlet/doubletdoublet
Overlap gene9330134C04Rik, EG665575
Upstream geneFbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik
Downstream geneHsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232M10.bB6Ng01-232M10.g
ACCGA045024GA045025
length1,1191,046
definitionB6Ng01-232M10.b B6Ng01-232M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,085,882 - 64,086,991)(63,978,406 - 63,979,438)
sequence
gaattcttcaggctcctgagccaatcatgggacagactcctctttgtgtc
ccacaactgccgcgggtattttgacaggtgatttcaatatcatgtagcta
tttatttattctggtttgggggacataaacacaaacttcttgggctacgg
tttacacattctacagcaaagtgagagccagggagaagagttgcttcaaa
cagcaagaaggtcagcggatattttgggctaagacagaaattccatccag
tttttaaaccaacaaaactgaatgatgcatgtagctaacttccttttttt
ccaagttgtttgtttattttctctgaaaaaaaaaatcaacaacctacaag
tctggaaaggccataggaagtggataacatttggaaacatcattttattc
tggccgggaggcgtgtcgaggttggttgagaccttcagagatttctatct
gtcctggttgtggtgaagtggttgatcccacagaagacaaagcagctggt
gtaggaaccgcaggtagaaatcagaaaatattctagagatgatataagca
cagtttagaggattctgagcctcccttgtcattcccttctgggcacactg
agtagtgttggcatctccaaggagtagcactttacacagcctagcactac
cagaagcctgaggacatgactcgaggtgtaacttcaggccctgctgccac
ctctcagccgtcccagtactttaacaatctgaagaagtctccacgcatag
tccggctcgcttaaactacatgctgttgggggtttgctccagacagcagt
agctcaacagaaggtaaaaagtcaaggcagttaccggggtaggtccagct
gcattttagtctttttagagctgggattgtgggtaattattgtaaaaccc
acaaatagccctgatgtgaaagcttcactggtctactccagaaattctgg
acatacttcatcaccgagcagctaaactaggagacgggctttctctgcct
ctggtccacaaagcagagtacctagattaactgctatctggagccacgtt
gaatggaggcatagacatccactattcctttcccaaacaattttcctttt
ctgcaatacatattgtttt
gaattcaagactatcctggtgagccccaggccagccagggcgacaaagta
ggcactgtctggaaatagggaaagtggagcaggaaggcatacatgcacac
atagctaggaggctgaagcagaagaatcacaggtttgaaactagcctggc
tatgtagcaagactgtctcaaaaaatagaggaaataagaaagaagtattt
cctgttcttagtgtgctgttgataatagaaccatattgcttcatagtgat
gaattacgtgataaatattgttgcctcctagatggtgttcaggaagtggc
ttatatccactcaaatcagaatgtgatcggctcaagcagagctgagaacc
acatgagccgatgggcaacgcgtgatgtgtttgagttgaagcagttttcc
cagctccctgctaatgtagctgtttgcagttctaaggtaagaaacattag
tttttatcttatttctcacaaaagtttatcaatagggtcctctttacgcc
ctcaaaatagctgttaaatctgttaagagacacagctaagtgttgaaaag
ccatataacataatagttgtaatcacaaatgtttggaatttgtggtgatt
taaatgagaatggtccccaggcctcatatgtttgaatgctaggtccccag
ttgttgaaactgtctggaaggattaggaggtgtgagtagccttgttgaag
gaggtgtgtcactgtgggcaggttctgaggttttcaaatgattctaacca
tcttcagagttctttctcttgcctctgaattatggatcaagttgtgagtc
cttagcttctgcctaccttagttagcacttctgcctaccctatcaactgg
tctgcctgcctgcctgcctgcctgctagcagccttccttgcattgatggt
catggactctaaccctcctgaaacgcttaagctgcccacataaacccttt
ttttcttcatatgttgcccttcattggggcatttttatcacgagcaagaa
aagtatacttaggacaaatttagtgaccaaccctaaattaaatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64085882_64086991
seq2: B6Ng01-232M10.b_46_1164 (reverse)

seq1  AAAAC-ATATGTATTTCCAAGAAAGGAAATTGTTTGGGAAA-GAATAGT-  47
      ||||| ||||||||| |  | || | ||||||||||||||| ||||||| 
seq2  AAAACAATATGTATTGCAGAAAAGGAAAATTGTTTGGGAAAGGAATAGTG  50

seq1  GATGTCTATGCCT-CATTC-ACGT-GCT-CAGATAGCAGTTTATCTAGGG  93
      ||||||||||||| ||||| |||| ||| |||||||||||| ||||| ||
seq2  GATGTCTATGCCTCCATTCAACGTGGCTCCAGATAGCAGTTAATCTA-GG  99

seq1  TACTCTGCTTTGTGGA-CAGAGGCAGAGAAAGCCCGTCTCCTAGTTTAGC  142
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACTCTGCTTTGTGGACCAGAGGCAGAGAAAGCCCGTCTCCTAGTTTAGC  149

seq1  TGCTCGGTGATGAAGTATGTTCAG-ATTTCTGGAGTAGACCAGTGAAGCT  191
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TGCTCGGTGATGAAGTATGTCCAGAATTTCTGGAGTAGACCAGTGAAGCT  199

seq1  TTCACATCAGGGCTATTTGTGGGTTTTAC-ATAATTACCCACAATCCCAG  240
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCACATCAGGGCTATTTGTGGGTTTTACAATAATTACCCACAATCCCAG  249

seq1  CTCTGAAAAGACTAAAATGCAGCTGGACCTACCCCGGTAACTGCCTTGAC  290
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAAAGACTAAAATGCAGCTGGACCTACCCCGGTAACTGCCTTGAC  299

seq1  TTTTTACCTTCTGTTGAGCTACTGCTGTCTGGAGCAAACCCCCAACAGCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTTCTGTTGAGCTACTGCTGTCTGGAGCAAACCCCCAACAGCA  349

seq1  TGTAGTTTAAGCGAGCCGGACTATGCGTGGAGACTTCTTCAGATTGTTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTAAGCGAGCCGGACTATGCGTGGAGACTTCTTCAGATTGTTAA  399

seq1  AGTACTGGGACGGCTGAGAGGTGGCAGCAGGGCCTGAAGTTACACCTCGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGGACGGCTGAGAGGTGGCAGCAGGGCCTGAAGTTACACCTCGA  449

seq1  GTCATGTCCTCAGGCTTCTGGTAGTGCTAGGCTGTGTAAAGTGCTACTCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTCCTCAGGCTTCTGGTAGTGCTAGGCTGTGTAAAGTGCTACTCC  499

seq1  TTGGAGATGCCAACACTACTCAGTGTGCCCAGAAGGGAATGACAAGGGAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGCCAACACTACTCAGTGTGCCCAGAAGGGAATGACAAGGGAG  549

seq1  GCTCAGAATCCTCTAAACTGTGCTTATATCATCTCTAGAATATTTTCTGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAATCCTCTAAACTGTGCTTATATCATCTCTAGAATATTTTCTGA  599

seq1  TTTCTACCTGCGGTTCCTACACCAGCTGCTTTGTCTTCTGTGGGATCAAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTGCGGTTCCTACACCAGCTGCTTTGTCTTCTGTGGGATCAAC  649

seq1  CACTTCACCACAACCAGGACAGATAGAAATCTCTGAAGGTCTCAACCAAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACCACAACCAGGACAGATAGAAATCTCTGAAGGTCTCAACCAAC  699

seq1  CTCGACACGCCTCCCGGCCAGAATAAAATGATGTTTCCAAATGTTATCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACACGCCTCCCGGCCAGAATAAAATGATGTTTCCAAATGTTATCCA  749

seq1  CTTCCTATGGCCTTTCCAGACTTGTAGGTTGTTGATTTTTTTTTTCAGAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATGGCCTTTCCAGACTTGTAGGTTGTTGATTTTTTTTTTCAGAG  799

seq1  AAAATAAACAAACAACTTGGAAAAAAAGGAAGTTAGCTACATGCATCATT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACAAACAACTTGGAAAAAAAGGAAGTTAGCTACATGCATCATT  849

seq1  CAGTTTTGTTGGTTTAAAAACTGGATGGAATTTCTGTCTTAGCCCAAAAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTTGGTTTAAAAACTGGATGGAATTTCTGTCTTAGCCCAAAAT  899

seq1  ATCCGCTGACCTTCTTGCTGTTTGAAGCAACTCTTCTCCCTGGCTCTCAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTGACCTTCTTGCTGTTTGAAGCAACTCTTCTCCCTGGCTCTCAC  949

seq1  TTTGCTGTAGAATGTGTAAACCGTAGCCCAAGAAGTTTGTGTTTATGTCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTAGAATGTGTAAACCGTAGCCCAAGAAGTTTGTGTTTATGTCC  999

seq1  CCCAAACCAGAATAAATAAATAGCTACATGATATTGAAATCACCTGTCAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCAGAATAAATAAATAGCTACATGATATTGAAATCACCTGTCAA  1049

seq1  AATACCCGCGGCAGTTGTGGGACACAAAGAGGAGTCTGTCCCATGATTGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCGCGGCAGTTGTGGGACACAAAGAGGAGTCTGTCCCATGATTGG  1099

seq1  CTCAGGAGCCTGAAGAATTC  1110
      ||||||||||||||||||||
seq2  CTCAGGAGCCTGAAGAATTC  1119

seq1: chr13_63978406_63979438
seq2: B6Ng01-232M10.g_70_1115

seq1  GAATTCAAGACTATCCTGGTGAGCCCCAGGCCAGCCAGGGCGACAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTATCCTGGTGAGCCCCAGGCCAGCCAGGGCGACAAAGTA  50

seq1  GGCACTGTCTGGAAATAGGGAAAGTGGAGCAGGAAGGCATACATGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTCTGGAAATAGGGAAAGTGGAGCAGGAAGGCATACATGCACAC  100

seq1  ATAGCTAGGAGGCTGAAGCAGAAGAATCACAGGTTTGAAACTAGCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAGGAGGCTGAAGCAGAAGAATCACAGGTTTGAAACTAGCCTGGC  150

seq1  TATGTAGCAAGACTGTCTCAAAAAATAGAGGAAATAAGAAAGAAGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCAAGACTGTCTCAAAAAATAGAGGAAATAAGAAAGAAGTATTT  200

seq1  CCTGTTCTTAGTGTGCTGTTGATAATAGAACCATATTGCTTCATAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTAGTGTGCTGTTGATAATAGAACCATATTGCTTCATAGTGAT  250

seq1  GAATTACGTGATAAATATTGTTGCCTCCTAGATGGTGTTCAGGAAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACGTGATAAATATTGTTGCCTCCTAGATGGTGTTCAGGAAGTGGC  300

seq1  TTATATCCACTCAAATCAGAATGTGATCGGCTCAAGCAGAGCTGAGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCCACTCAAATCAGAATGTGATCGGCTCAAGCAGAGCTGAGAACC  350

seq1  ACATGAGCCGATGGGCAACGCGTGATGTGTTTGAGTTGAAGCAGTTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCCGATGGGCAACGCGTGATGTGTTTGAGTTGAAGCAGTTTTCC  400

seq1  CAGCTCCCTGCTAATGTAGCTGTTTGCAGTTCTAAGGTAAGAAACATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCTGCTAATGTAGCTGTTTGCAGTTCTAAGGTAAGAAACATTAG  450

seq1  TTTTTATCTTATTTCTCACAAAAGTTTATCAATAGGGTCCTCTTTACGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCTTATTTCTCACAAAAGTTTATCAATAGGGTCCTCTTTACGCC  500

seq1  CTCAAAATAGCTGTTAAATCTGTTAAGAGACACAGCTAAGTGTTGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATAGCTGTTAAATCTGTTAAGAGACACAGCTAAGTGTTGAAAAG  550

seq1  CCATATAACATAATAGTTGTAATCACAAATGTTTGGAATTTGTGGTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAACATAATAGTTGTAATCACAAATGTTTGGAATTTGTGGTGATT  600

seq1  TAAATGAGAATGGTCCCCAGGCCTCATATGTTTGAATGCTAGGTCCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGAATGGTCCCCAGGCCTCATATGTTTGAATGCTAGGTCCCCAG  650

seq1  TTGTTGAAACTGTCTGGAAGGATTAGGAGGTGTGAGTAGCCTTGTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAACTGTCTGGAAGGATTAGGAGGTGTGAGTAGCCTTGTTGAAG  700

seq1  GAGGTGTGTCACTGTGGGCAGGTTCTGAGG-TTTCAAATGATTCTAACCA  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGGTGTGTCACTGTGGGCAGGTTCTGAGGTTTTCAAATGATTCTAACCA  750

seq1  TCTTCAGAGTTCTTTCTC-TGCCTCTGAATTATGGATCAAGTTGTGAGTC  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTTCAGAGTTCTTTCTCTTGCCTCTGAATTATGGATCAAGTTGTGAGTC  800

seq1  CTTAGCTTCTGCCTACCTTAGTTAGCACTTCTGCCTACCCTATC-ACTGG  847
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAGCTTCTGCCTACCTTAGTTAGCACTTCTGCCTACCCTATCAACTGG  850

seq1  TCTGCCTGCCTGCCTGCCTGCCTGCTAGCAGCC-TCCCTGCAGTGATGGT  896
      ||||||||||||||||||||||||||||||||| ||| |||| |||||||
seq2  TCTGCCTGCCTGCCTGCCTGCCTGCTAGCAGCCTTCCTTGCATTGATGGT  900

seq1  CATGGACTCTAACCCT-CTGAAACGC-TAAGC--GCCACATAAA-CCTTT  941
      |||||||||||||||| ||||||||| |||||   ||||||||| |||||
seq2  CATGGACTCTAACCCTCCTGAAACGCTTAAGCTGCCCACATAAACCCTTT  950

seq1  TTTCTTTCATATGTTG-CCTTCATTGTGGCA-TTTTATCAC-AGCAAAGA  988
      |||  ||||||||||| ||||||||| |||| ||||||||| ||| ||||
seq2  TTTTCTTCATATGTTGCCCTTCATTGGGGCATTTTTATCACGAGC-AAGA  999

seq1  AAAGTA-AC-TAAGACAAATTAAGTGA-CAAACCTAAATTAAAATGCC  1033
      |||||| || || |||||||| ||||| ||| |||||||| |||||||
seq2  AAAGTATACTTAGGACAAATTTAGTGACCAACCCTAAATT-AAATGCC  1046