BAC Information

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BAC

Clone NameB6Ng01-232N17
Chromosome13 (Build37)
Map Location 79,317,257 - 79,439,662
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232N17.bB6Ng01-232N17.g
ACCGA045086GA045087
length1,1591,085
definitionB6Ng01-232N17.b B6Ng01-232N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,317,257 - 79,318,412)(79,438,576 - 79,439,662)
sequence
gaattctttatttttttagatagaagttccatgacttattccataaacac
atagatgggatttaatgaagttagaaacaacatatacatgcctactataa
atttctagtgtggcattcttttgacagatggctttccaactctcaaaaag
ccacaaattctattaaaatttgcaactaagtttttctacctaggtgtcaa
agtacatagtatgcccttacagaggacatttgataatgacctgataacaa
gatagataaaatgcctttgtgttttttatgcttcttaagttatgtttaat
ctcgcactgacatgaactctatttaacagtctttcatagaaagagcgttt
taatttattttcaaatagaaatgcttataaaatagaatcaatgtcataat
tttatgaacataaaataaaagcttagaatcacagaagttgaaagtcgcat
ataaaatttatacatgttgccagggtttgaaatatattatggaatacata
tgtgatggaaaattattgcaacagtttgaagaaaaccctttctagaaggg
gcagaaaaaaatctttgcttagacacaataaatactcttatcacttgttt
tcttttccataggcagtgctctgaatggtttaattgtgttggcatctttc
actctgtccataactctgatcccattggagcaccaagacataggtatgca
aggactcattatactatggcaggttcagaaataactccaaagtgtgtttc
cactttccaagaaatccttaatactggagactttatctcaaaaatcctga
aatcttgagctctgttcttcagtgttcttgtgtcctcagattgtgaacta
ttgcatagaattcagtttcaatctatcaaaaagaaaagtcttacttcttt
acaaaatgattatataaaatgattgttatacatactaacaaatcaaagta
cagtgcaaaatgtgaattctttccttcattaccaaagattccaattcatc
tctgtgctgcttgtgggaaaatctagaatatgacatttgaaggctttcat
catatgcacttcagattttattccatcattagtcaaaccacatatctaat
agcacttatgttcttacagttgaattgcaatgaatagcaaagttctccac
cttcatgga
gaattcttcatgatattcaagtttctttcccataaagccaattgtataga
tatctttaagactgtataatgcaggcaacttgatacttagtgtgtggggg
aacaagcctttatgcttgtatctctgatgatttattctaacctgtgcttt
gccaacttccttttctgtgttcaatatgaatgatatctcttgagaattat
gcttccctttcatcaaaaaaaaaaaaaaaagaccagaaggtagtagtaaa
tatcctgactagaaattaggtgtgtgttctgtttgaacctaaatctcact
tgacgtagatattctgtatttagcatccaactgttagaaatgaaactacg
tttcttttgataattaagcgataaaaatggcctatttctccaaaaaaaga
gaaataactaataaaaaagtgaaatgatggtgagtaactactaattaatt
aaaaacgagccataaatagctaagtgtttgggcttggtagtttacatgtg
cttacaagaggttgctgttagcctgctagagatggctagtgcattcctag
gatgtgaaagtccctctgaggcaagctgggatgggacacaaacatttggg
gcagccccaccctcactcactctcctcccttgcaactgttcttttattct
acatatttacttttctgcttcggatctctttttgcaagctcatgaattac
atttgcaactctccagcaaacagagcctcaatcaggacccaaacagaaac
cttcatttgaagaaaacaaacttcaagccaaggtttcaacgacctatata
aatgtttgtaagtttcactttttacataatagcagccaaagatgctcttc
tacaaattcagataaagttagtggggcaaaatatcacttaaaaaaaaaaa
aaaatcaaacgggtgttagatatactttagaagacatttatctttatcca
tcatattccaaatattgatgtagattatcagtggtctgagctactggaga
agctgcaagatcaacctgtatgctatacatctaaggtttaatttctaatt
ggcctttttatgttaattcttatttggaaaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79317257_79318412
seq2: B6Ng01-232N17.b_44_1202

seq1  GAATTCTTTATTTTTTTAGATAGAAGTTCCATGACTTATTCCATAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTTTTTAGATAGAAGTTCCATGACTTATTCCATAAACAC  50

seq1  ATAGATGGGATTTAATGAAGTTAGAAACAACATATACATGCCTACTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGGATTTAATGAAGTTAGAAACAACATATACATGCCTACTATAA  100

seq1  ATTTCTAGTGTGGCATTCTTTTGACAGATGGCTTTCCAACTCTCAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTGTGGCATTCTTTTGACAGATGGCTTTCCAACTCTCAAAAAG  150

seq1  CCACAAATTCTATTAAAATTTGCAACTAAGTTTTTCTACCTAGGTGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATTCTATTAAAATTTGCAACTAAGTTTTTCTACCTAGGTGTCAA  200

seq1  AGTACATAGTATGCCCTTACAGAGGACATTTGATAATGACCTGATAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAGTATGCCCTTACAGAGGACATTTGATAATGACCTGATAACAA  250

seq1  GATAGATAAAATGCCTTTGTGTTTTTTATGCTTCTTAAGTTATGTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAAAATGCCTTTGTGTTTTTTATGCTTCTTAAGTTATGTTTAAT  300

seq1  CTCGCACTGACATGAACTCTATTTAACAGTCTTTCATAGAAAGAGCGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACTGACATGAACTCTATTTAACAGTCTTTCATAGAAAGAGCGTTT  350

seq1  TAATTTATTTTCAAATAGAAATGCTTATAAAATAGAATCAATGTCATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTTTCAAATAGAAATGCTTATAAAATAGAATCAATGTCATAAT  400

seq1  TTTATGAACATAAAATAAAAGCTTAGAATCACAGAAGTTGAAAGTCGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAACATAAAATAAAAGCTTAGAATCACAGAAGTTGAAAGTCGCAT  450

seq1  ATAAAATTTATACATGTTGCCAGGGTTTGAAATATATTATGGAATACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTATACATGTTGCCAGGGTTTGAAATATATTATGGAATACATA  500

seq1  TGTGATGGAAAATTATTGCAACAGTTTGAAGAAAACCCTTTCTAGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGAAAATTATTGCAACAGTTTGAAGAAAACCCTTTCTAGAAGGG  550

seq1  GCAGAAAAAAATCTTTGCTTAGACACAATAAATACTCTTATCACTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAAAATCTTTGCTTAGACACAATAAATACTCTTATCACTTGTTT  600

seq1  TCTTTTCCATAGGCAGTGCTCTGAATGGTTTAATTGTGTTGGCATCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCATAGGCAGTGCTCTGAATGGTTTAATTGTGTTGGCATCTTTC  650

seq1  ACTCTGTCCATAACTCTGATCCCATTGGAGCACCAAGACATAGGTATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCCATAACTCTGATCCCATTGGAGCACCAAGACATAGGTATGCA  700

seq1  AGGACTCATTATACTATGGCAGGTTCAGAAATAACTCCAAAGTGTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCATTATACTATGGCAGGTTCAGAAATAACTCCAAAGTGTGTTTC  750

seq1  CACTTTCCAAGAAATCCTTAATACTGGAGACTTTATCTCAAAAATCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCAAGAAATCCTTAATACTGGAGACTTTATCTCAAAAATCCTGA  800

seq1  AATCTTGAGCTCTGTTCTTCAGTGTTCTTGTGTCCTCAGATTGTGAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAGCTCTGTTCTTCAGTGTTCTTGTGTCCTCAGATTGTGAACTA  850

seq1  TTGCATAGAATTCAGTTTCAATCTATCAAAAAGAAAAGTCTTACTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGAATTCAGTTTCAATCTATCAAAAAGAAAAGTCTTACTTCTTT  900

seq1  ACAAAATGATTATATAAAATGATTGTTATACATACTAACAAATCAAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGATTATATAAAATGATTGTTATACATACTAACAAATCAAAGTA  950

seq1  CAGTGCAAAATGTGAATTCTTTCCTTCATTACCAAAGATTCCAATTCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAAAATGTGAATTCTTTCCTTCATTACCAAAGATTCCAATTCATC  1000

seq1  TCTGTGCTGCTTGTGGGAAAATCTTAGAATAATGACATTTG-AGGCTTCA  1049
      ||||||||||||||||||||||| |||||| |||||||||| ||||||  
seq2  TCTGTGCTGCTTGTGGGAAAATC-TAGAAT-ATGACATTTGAAGGCTTTC  1048

seq1  ATCATATGCACTTCAGAATTTA-TCCACCATTTAGTCAAA-CACATATCT  1097
      ||||||||||||||||| |||| |||| || ||||||||| |||||||||
seq2  ATCATATGCACTTCAGATTTTATTCCATCA-TTAGTCAAACCACATATCT  1097

seq1  AATAAGCACTTATG-TCTTACAGT--GATTGCCATG-ATAGCAAAGGTCC  1143
      ||| |||||||||| |||||||||   ||||| ||| ||||||||| || 
seq2  AAT-AGCACTTATGTTCTTACAGTTGAATTGCAATGAATAGCAAAGTTCT  1146

seq1  CCACTTTCATGGA  1156
      |||| ||||||||
seq2  CCACCTTCATGGA  1159

seq1: chr13_79438576_79439662
seq2: B6Ng01-232N17.g_68_1152 (reverse)

seq1  AAATTTTTCCAAATTAAGAA-TAACATAAAAAGCCAATTTAGAAATAAAA  49
      ||||||||||||| |||||| |||||||||||| | | |||||||| |||
seq2  AAATTTTTCCAAA-TAAGAATTAACATAAAAAGGCCAATTAGAAATTAAA  49

seq1  CTTAAGATGTATAGCATAACAAGTTTTGATCTTGCAGCTTCT-CAGTAGC  98
      | | ||||||||||||| ||| |  ||||||||||||||||| |||||||
seq2  CCTTAGATGTATAGCAT-ACAGG--TTGATCTTGCAGCTTCTCCAGTAGC  96

seq1  TCAGA-CACTGAT-ATCTACATCATTATTTGGAATATTGATGGGATAAAG  146
      ||||| ||||||| |||||||||| ||||||||||| |||| ||||||||
seq2  TCAGACCACTGATAATCTACATCAATATTTGGAATA-TGAT-GGATAAAG  144

seq1  ATAAATGTCTTCTAAAGTATATCTAACACCCGTTTGATTTTTTTTTTTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCTTCTAAAGTATATCTAACACCCGTTTGATTTTTTTTTTTTT  194

seq1  TTAAGTGATATTTTGCCCCACTAACTTTATCTGAATTTGTAGAAGAGCAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGATATTTTGCCCCACTAACTTTATCTGAATTTGTAGAAGAGCAT  244

seq1  CTTTGGCTGCTATTATGTAAAAAGTGAAACTTACAAACATTTATATAGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTGCTATTATGTAAAAAGTGAAACTTACAAACATTTATATAGGT  294

seq1  CGTTGAAACCTTGGCTTGAAGTTTGTTTTCTTCAAATGAAGGTTTCTGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAAACCTTGGCTTGAAGTTTGTTTTCTTCAAATGAAGGTTTCTGTT  344

seq1  TGGGTCCTGATTGAGGCTCTGTTTGCTGGAGAGTTGCAAATGTAATTCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTGATTGAGGCTCTGTTTGCTGGAGAGTTGCAAATGTAATTCAT  394

seq1  GAGCTTGCAAAAAGAGATCCGAAGCAGAAAAGTAAATATGTAGAATAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCAAAAAGAGATCCGAAGCAGAAAAGTAAATATGTAGAATAAAA  444

seq1  GAACAGTTGCAAGGGAGGAGAGTGAGTGAGGGTGGGGCTGCCCCAAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTGCAAGGGAGGAGAGTGAGTGAGGGTGGGGCTGCCCCAAATGT  494

seq1  TTGTGTCCCATCCCAGCTTGCCTCAGAGGGACTTTCACATCCTAGGAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCCATCCCAGCTTGCCTCAGAGGGACTTTCACATCCTAGGAATG  544

seq1  CACTAGCCATCTCTAGCAGGCTAACAGCAACCTCTTGTAAGCACATGTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCCATCTCTAGCAGGCTAACAGCAACCTCTTGTAAGCACATGTAA  594

seq1  ACTACCAAGCCCAAACACTTAGCTATTTATGGCTCGTTTTTAATTAATTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAAGCCCAAACACTTAGCTATTTATGGCTCGTTTTTAATTAATTA  644

seq1  GTAGTTACTCACCATCATTTCACTTTTTTATTAGTTATTTCTCTTTTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTACTCACCATCATTTCACTTTTTTATTAGTTATTTCTCTTTTTTT  694

seq1  GGAGAAATAGGCCATTTTTATCGCTTAATTATCAAAAGAAACGTAGTTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATAGGCCATTTTTATCGCTTAATTATCAAAAGAAACGTAGTTTC  744

seq1  ATTTCTAACAGTTGGATGCTAAATACAGAATATCTACGTCAAGTGAGATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAACAGTTGGATGCTAAATACAGAATATCTACGTCAAGTGAGATT  794

seq1  TAGGTTCAAACAGAACACACACCTAATTTCTAGTCAGGATATTTACTACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCAAACAGAACACACACCTAATTTCTAGTCAGGATATTTACTACT  844

seq1  ACCTTCTGGTCTTTTTTTTTTTTTTTTGATGAAAGGGAAGCATAATTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGGTCTTTTTTTTTTTTTTTTGATGAAAGGGAAGCATAATTCTC  894

seq1  AAGAGATATCATTCATATTGAACACAGAAAAGGAAGTTGGCAAAGCACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATATCATTCATATTGAACACAGAAAAGGAAGTTGGCAAAGCACAG  944

seq1  GTTAGAATAAATCATCAGAGATACAAGCATAAAGGCTTGTTCCCCCACAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATAAATCATCAGAGATACAAGCATAAAGGCTTGTTCCCCCACAC  994

seq1  ACTAAGTATCAAGTTGCCTGCATTATACAGTCTTAAAGATATCTATACAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTATCAAGTTGCCTGCATTATACAGTCTTAAAGATATCTATACAA  1044

seq1  TTGGCTTTATGGGAAAGAAACTTGAATATCATGAAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTATGGGAAAGAAACTTGAATATCATGAAGAATTC  1085