BAC Information

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BAC

Clone NameB6Ng01-233B07
Chromosome13 (Build37)16 (Build37)
Map Location 117,275,381 - 117,275,53964,242,385 - 64,243,556
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
Downstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233B07.bB6Ng01-233B07.g
ACCGA045241GA045242
length7261,161
definitionB6Ng01-233B07.b B6Ng01-233B07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,275,381 - 117,275,539)(64,242,385 - 64,243,556)
sequence
gaattctatgtttagctctgtatcccattttttaaaaatttttattggtt
attttatttatttgcatttctaatgttatcccccttcccagttttctctc
caaaaagcccacatcccacctctcttcccatcttcctccatgacggtgcc
tcctactcaccaactcactcctgccccaccaccctagcattcccctatgc
tgtggcatcaagccttctcaggactaaggggctcccatttctttgatggc
agacaaggccatcctctgccacatatgtagctggagccataggtccctcc
atgtgtatctttggttggttgtttactacctgggagctctggggagtcta
gttgattgatattgttgttcttcttatggggttgcaaaccccttcagctc
cttcagtcctttccctaactcctctactggtatccccctgctcagtcatg
ttattttgattgttggtgtcttacttcttcagttcttcatatgttttaga
tattagcccactggcagatgcaaggttactgtaggctgttggtttgtcct
aatgatagtgagtgtcctttgacttacggaagcttttcagtttcatgaga
tcccatttattaattctttttttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctctctctctctc
tctctctctctctctctctctctctc

gaattcatccattcaggattttataaactgaattgttaatgataattgtg
tatatatatatatatatatatatatatatatatcacttaaagaaatttat
tttctaattttatgccataaattttattttcaaaaatatttagccactca
ctgtaagaatttaaaatattttgtattagaataacttatagtatttaatg
ttatctttgcaataaaagtcagtagtaagatcagataagattaattttct
atgtaaggaaagaacattttaccttgccgttacacattagaaaggaaaat
atacatacacacacctatttagtttctgtttctttttattgatatgaact
tattttatccatgtaaacatgatctattgatgcttgtcagctaactgaag
atctcacttgaaaatgagacaaccttcgatcccacactcagctgtcactc
aggtggtcttgtacttgtgaagccatgctgataccaatgatagactttga
ggaatacacttgggggtgcatacttctcatccagcagaacatggtgaatg
taggagacttgcttgcatcaagtcttctggggaagtctacctaacagggt
atctagcccgcacattcaaatgtaccctgtccctcgcccaccttctttct
gctctccctcaccttccttattcctttcttcctttttattttgcattttg
ttatagaatctcatagtgtactatacaccagcctctgaatttaagatgtc
actgcctcaacttttccagtacagacaacacaggtaggcagtaccatact
cacctttttatttttcttagttaaggtttggattatctacaaagtaatcc
actttgtctttgaatactttgtattttgtctttggatgaattattttctt
tatgaaagcaatatttctttgcctgtatttaagtgctgcatcatgacact
ctcttcatccttaaagcaaggacaaattttgccccatcgatttgtgactt
aatgtgtcagaaagctgcgtggtagtgtgcctttgtcattggtttgcaga
tgttttttcacacacaggtgccagtagtgatccgtttgaccaagacactt
acactgaacagcttgaggcctctgacgtggaactcccacatagcttcctt
tattctcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117275381_117275539
seq2: B6Ng01-233B07.b_660_772 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAA  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAA  50

seq1  GAAAGAAAGAAAGAAAGAAAGGAAGAGAGAGAGAGAAAGAAAGAAAGAAA  100
      |||||||||||||||||||              |||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAA--------------AGAAAGAAAGAAAGAAA  86

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  150
      |||||||||||||||||||| ||||||                       
seq2  GAAAGAAAGAAAGAAAGAAAAAAAGAA-----------------------  113

seq1  AAGAAAGAA  159
               
seq2  ---------  113


seq1: chr16_64242385_64243556
seq2: B6Ng01-233B07.g_64_1224 (reverse)

seq1  TGAGGAG-ATAAAGGAGAAGCTAATGTGGGAGTCTCAATGTCAGAGGCCT  49
      ||||||| ||||||  |||||| |||||||||| || | |||||||||| 
seq2  TGAGGAGAATAAAG--GAAGCT-ATGTGGGAGT-TCCACGTCAGAGGCC-  45

seq1  TCAAGCTTTGCTCAGTGT-AGTGTCTTTGTCAAAACGAATCACTACTGCC  98
      ||||||  || ||||||| |||||||| ||| ||||| |||||||||| |
seq2  TCAAGC--TGTTCAGTGTAAGTGTCTTGGTC-AAACGGATCACTACTGGC  92

seq1  ACTGTTGTGTG-AAAAACATCTGCAAACAAATGACAAAGGCCACACTACC  147
      ||   |||||| |||||||||||||||| ||||||||||| |||||||||
seq2  ACCTGTGTGTGAAAAAACATCTGCAAACCAATGACAAAGG-CACACTACC  141

seq1  ACGCAGCTTTCCTGACACATTAAGTCAACAAATCGATGGGGCAAAATTTT  197
      |||||||||| ||||||||||||||| ||||||||||||||||||| |||
seq2  ACGCAGCTTT-CTGACACATTAAGTC-ACAAATCGATGGGGCAAAA-TTT  188

seq1  GTCCTTTGCTTTAAGGATGAAGAGAGTGTCATGATGCAGCACTTAAATAC  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCC-TTGCTTTAAGGATGAAGAGAGTGTCATGATGCAGCACTTAAATAC  237

seq1  AGGCAAAGAAATATTTGCTTTCATAAAGAAAATAATTCATCCAAAGACAA  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGAAATA-TTGCTTTCATAAAGAAAATAATTCATCCAAAGACAA  286

seq1  AATACAAAGTATTCAAAGACAAAGTGGATTACTTTGTAGATAATCCAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGTATTCAAAGACAAAGTGGATTACTTTGTAGATAATCCAAAC  336

seq1  CTTAACTAAGAAAAATAAAAAGGTGAGTATGGTACTGCCTACCTGTGTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTAAGAAAAATAAAAAGGTGAGTATGGTACTGCCTACCTGTGTTG  386

seq1  TCTGTACTGGAAAAGTTGAGGCAGTGACATCTTAAATTCAGAGGCTGGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTGGAAAAGTTGAGGCAGTGACATCTTAAATTCAGAGGCTGGTG  436

seq1  TATAGTACACTATGAGATTCTATAACAAAATGCAAAATAAAAAGGAAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTACACTATGAGATTCTATAACAAAATGCAAAATAAAAAGGAAGAA  486

seq1  AGGAATAAGGAAGGTGAGGGAGAGCAGAAAGAAGGTGGGCGAGGGACAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAGGAAGGTGAGGGAGAGCAGAAAGAAGGTGGGCGAGGGACAGG  536

seq1  GTACATTTGAATGTGCGGGCTAGATACCCTGTTAGGTAGACTTCCCCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTGAATGTGCGGGCTAGATACCCTGTTAGGTAGACTTCCCCAGA  586

seq1  AGACTTGATGCAAGCAAGTCTCCTACATTCACCATGTTCTGCTGGATGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGATGCAAGCAAGTCTCCTACATTCACCATGTTCTGCTGGATGAG  636

seq1  AAGTATGCACCCCCAAGTGTATTCCTCAAAGTCTATCATTGGTATCAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCACCCCCAAGTGTATTCCTCAAAGTCTATCATTGGTATCAGCA  686

seq1  TGGCTTCACAAGTACAAGACCACCTGAGTGACAGCTGAGTGTGGGATCGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCACAAGTACAAGACCACCTGAGTGACAGCTGAGTGTGGGATCGA  736

seq1  AGGTTGTCTCATTTTCAAGTGAGATCTTCAGTTAGCTGACAAGCATCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCTCATTTTCAAGTGAGATCTTCAGTTAGCTGACAAGCATCAAT  786

seq1  AGATCATGTTTACATGGATAAAATAAGTTCATATCAATAAAAAGAAACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGTTTACATGGATAAAATAAGTTCATATCAATAAAAAGAAACAG  836

seq1  AAACTAAATAGGTGTGTGTATGTATATTTTCCTTTCTAATGTGTAACGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATAGGTGTGTGTATGTATATTTTCCTTTCTAATGTGTAACGGC  886

seq1  AAGGTAAAATGTTCTTTCCTTACATAGAAAATTAATCTTATCTGATCTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAATGTTCTTTCCTTACATAGAAAATTAATCTTATCTGATCTTA  936

seq1  CTACTGACTTTTATTGCAAAGATAACATTAAATACTATAAGTTATTCTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACTTTTATTGCAAAGATAACATTAAATACTATAAGTTATTCTAA  986

seq1  TACAAAATATTTTAAATTCTTACAGTGAGTGGCTAAATATTTTTGAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATATTTTAAATTCTTACAGTGAGTGGCTAAATATTTTTGAAAAT  1036

seq1  AAAATTTATGGCATAAAATTAGAAAATAAATTTCTTTAAGTGATATATAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATGGCATAAAATTAGAAAATAAATTTCTTTAAGTGATATATAT  1086

seq1  ATATATATATATATATATATATATACACAATTATCATTAACAATTCAGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATACACAATTATCATTAACAATTCAGTT  1136

seq1  TATAAAATCCTGAATGGATGAATTC  1172
      |||||||||||||||||||||||||
seq2  TATAAAATCCTGAATGGATGAATTC  1161


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