BAC Information

Click to search

BAC

Clone NameB6Ng01-233K07
Chromosome13 (Build37)
Map Location 14,234,216 - 14,235,368
singlet/doubletsinglet
Overlap geneArid4b
Upstream genePrl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243
Downstream geneLOC100039916, Hecw1, Mrpl32, Psma2, AW209491, EG665099, LOC670994
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233K07.bB6Ng01-233K07.g
ACCGA045640GA045641
length3511,168
definitionB6Ng01-233K07.b B6Ng01-233K07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgcactaaacccatctgatccagggattttttggatgagagactttgaat
gactactatttctttaggggttatgggactgtttagatggttgatctgat
cctgatttaacgttggtatttggtaactatctagaaaattgtccatttca
tccagattttcaagttttgttgaatataggtgttgtgagccggccggcgg
ctcacatggaccaggtacacctgggtggcagacgggggctgaaagacaga
aactaggcagtcgagagcagagagcaataatggaggccaagtcaatgttc
ctgatcaaggtgcaaatgtttaatagcaatttgtgcttataaagtggggg
g

gaattcacattgagagagacacaagagatgtccattgtttggattttgag
caatggggcggggagaaggtatgggatgtagaacagtttaagggtggacc
aggaggagaataaaatctggagtgtaaaaccataaaaaagattaaattaa
aagaaggaatataaaaaaaaatcaggatctatttaaaatagtacaaaaga
tatttaaaatcagggattccaaagcaagggatagaatatcaccatgtaga
aagtccgtcctctccaggcttatcttctgaatgtattttacagaagcaca
aaagaaccatgtgtgtattttgtgtgtactgaactgcaatggttgtttct
taactggattgtatccttgcccctttactgttaatttccagcttttttcc
ccccaatctaccttttttttttaaaggttttattttatatgtatgggcat
gtatgtcttaggtaccatgtatatgcattgcctgcagaaaccagaagagg
gcattggttcccatggaactggaattaggaggggcttgtgagtgtgttgg
gaagataagctggttctctgcaatagacagtattcttatcccctgagcca
cctctctaacccctgccttctccctttttaagtttactcagtattgggaa
tactagaagactgtctcctgaatgccttggagatctgagcttaggatctc
ctatcttgtagtgtaataccaagatgtgtagtatagtcttttagccgttt
tttaggggcggggggttggagactggctgttctgttctgctttttcccct
tagtcttatctttgttttatctttggaacatgttttgctatgtaaatcat
gctagcctcaaacttcactctccttgccttgggcctcctgactgttagaa
ttacaggtgtgccactattatgccctattgatgccagactgctaacagac
tatttgaaccagactgctaacttcttggtatatttatcttccttgaaggt
taaattaagattgtctaatatttttctctttctagaaccagaaggagagt
cttctcttcatccaggtgatggacgatgaggaggagaggaaacggacttg
gatgtagccctactaaggccaaagttgtgttggttagattatgtgttagc
attgagaaaagaaagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_14234216_14235368
seq2: B6Ng01-233K07.g_66_1233

seq1  GAATTCACATTGAGAGAGACACAAGAGATGTCCATTGTTTGGATTTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGAGAGAGACACAAGAGATGTCCATTGTTTGGATTTTGAG  50

seq1  CAATGGGGCGGGGAGAAGGTATGGGATGTAGAACAGTTTAAGGGTGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGGCGGGGAGAAGGTATGGGATGTAGAACAGTTTAAGGGTGGACC  100

seq1  AGGAGGAGAATAAAATCTGGAGTGTAAAACCATAAAAAAGATTAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAATAAAATCTGGAGTGTAAAACCATAAAAAAGATTAAATTAA  150

seq1  AAGAAGGAATATAAAAAAAAATCAGGATCTATTTAAAATAGTACAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAATATAAAAAAAAATCAGGATCTATTTAAAATAGTACAAAAGA  200

seq1  TATTTAAAATCAGGGATTCCAAAGCAAGGGATAGAATATCACCATGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATCAGGGATTCCAAAGCAAGGGATAGAATATCACCATGTAGA  250

seq1  AAGTCCGTCCTCTCCAGGCTTATCTTCTGAATGTATTTTACAGAAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCGTCCTCTCCAGGCTTATCTTCTGAATGTATTTTACAGAAGCACA  300

seq1  AAAGAACCATGTGTGTATTTTGTGTGTACTGAACTGCAATGGTTGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCATGTGTGTATTTTGTGTGTACTGAACTGCAATGGTTGTTTCT  350

seq1  TAACTGGATTGTATCCTTGCCCCTTTACTGTTAATTTCCAGCTTTTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATTGTATCCTTGCCCCTTTACTGTTAATTTCCAGCTTTTTTCC  400

seq1  CCCCAATCTACCTTTTTTTTTTAAAGGTTTTATTTTATATGTATGGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATCTACCTTTTTTTTTTAAAGGTTTTATTTTATATGTATGGGCAT  450

seq1  GTATGTCTTAGGTACCATGTATATGCATTGCCTGCAGAAACCAGAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTTAGGTACCATGTATATGCATTGCCTGCAGAAACCAGAAGAGG  500

seq1  GCATTGGTTCCCATGGAACTGGAATTAGGAGGGGCTTGTGAGTGTGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTTCCCATGGAACTGGAATTAGGAGGGGCTTGTGAGTGTGTTGG  550

seq1  GAAGATAAGCTGGTTCTCTGCAATAGACAGTATTCTTATCCCCTGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAGCTGGTTCTCTGCAATAGACAGTATTCTTATCCCCTGAGCCA  600

seq1  CCTCTCTAACCCCTGCCTTCTCCCTTTTTAAGTTTACTCAGTATTGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAACCCCTGCCTTCTCCCTTTTTAAGTTTACTCAGTATTGGGAA  650

seq1  TACTAGAAGACTGTCTCCTGAATGCCTTGGAGATCTGAGCTTAGGATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAAGACTGTCTCCTGAATGCCTTGGAGATCTGAGCTTAGGATCTC  700

seq1  CTATCTTGTAGTGTAATACCAAGATGTGTAGTATAGTCTTTTAGCCGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGTAGTGTAATACCAAGATGTGTAGTATAGTCTTTTAGCCGTTT  750

seq1  TTTAGGGGCGGGGGGTTGGAGACTGGCTGTTCTGTTCTGCTTTTTCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGCGGGGGGTTGGAGACTGGCTGTTCTGTTCTGCTTTTTCCCCT  800

seq1  TAGTCTTATCTTTGTTTTATCTTTTGGAACATGTTTTGCTATGTAAATCA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGTCTTATCTTTGTTTTATC-TTTGGAACATGTTTTGCTATGTAAATCA  849

seq1  TGCTAGCCTCAAACTTCACTTCTCCTTGCCTT-GGCCTCCTGACTGTTAG  899
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  TGCTAGCCTCAAACTTCAC-TCTCCTTGCCTTGGGCCTCCTGACTGTTAG  898

seq1  AATTACAGGTGTG-CACTATTATG-CCTATTGATGCCAGACTGCTAACAG  947
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  AATTACAGGTGTGCCACTATTATGCCCTATTGATGCCAGACTGCTAACAG  948

seq1  ACTA-TTGAACCAGACTGCTAAC-TCTTGGTATATTTATCTTCC-TGAAG  994
      |||| |||||||||||||||||| |||||||||||||||||||| |||||
seq2  ACTATTTGAACCAGACTGCTAACTTCTTGGTATATTTATCTTCCTTGAAG  998

seq1  GT--AAATAAGATTGTTCTATATTTTTTTCTCTTTCTAG-ACCAGAGGAG  1041
      ||  || |||||||| |||| || ||||||||||||||| |||||| |  
seq2  GTTAAATTAAGATTG-TCTA-ATATTTTTCTCTTTCTAGAACCAGAAGGA  1046

seq1  GAGTCTTCCTCCTCATCCA-GTGAT-GACGATGAGGAGGAGAGGAAACAG  1089
      ||||||| ||| ||||||| ||||| |||||||||||||||||||||| |
seq2  GAGTCTT-CTCTTCATCCAGGTGATGGACGATGAGGAGGAGAGGAAACGG  1095

seq1  ACT--GATG-AG--CTACTA--GGCAAAGTTGT-TTGTGTAGATTA--TG  1129
      |||  |||| ||  ||||||  | ||||||||| |||  |||||||  ||
seq2  ACTTGGATGTAGCCCTACTAAGGCCAAAGTTGTGTTGGTTAGATTATGTG  1145

seq1  TTAGCTTGGAGAAAAAGAAAGCGA  1153
      ||||| | ||| ||||||||||||
seq2  TTAGCATTGAG-AAAAGAAAGCGA  1168


| Home | SequenceCutter | Blast | Download |