BAC Information

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BAC

Clone NameB6Ng01-233L07
Chromosome13 (Build37)
Map Location 58,341,926 - 58,551,200
singlet/doubletdoublet
Overlap geneGkap1, Kif27, Hnrpk, Rmi1
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252
Downstream geneLOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233L07.bB6Ng01-233L07.g
ACCGA045686GA045687
length1,1601,058
definitionB6Ng01-233L07.b B6Ng01-233L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,550,052 - 58,551,200)(58,341,926 - 58,342,820)
sequence
gaattcagaggccagttgcacacagcatctgcctcagctatggtaccgtc
tgcagcacattgtgcagaatcacggcaagtgtggtccttggaggatgtgt
tctctgagcactgaccattctacctcctttcatatgttgtttacttacat
tgctacagtcaaggattgatctgtttcaggttttcctggcatccatttaa
tagccatataaaaccaaggagctcaagggtgagaaaaagaccagccttgc
tacctcattatttttatttatattacatgcatgtgcgtgcatgcctgggt
acacatagtggaggtcagaggccagcgggcaggtgctagtcctctcctct
ctggcatgtgactctagggatctaactcatgccactggccttagcagtga
acacctttattcccgaggcatcccgctggccagaataaacacagccagcc
aaattcttaatattttaaccaatgtactttttaagcaagtaagcatgcta
gtctctggatgaaaaataattttaaaataaataaaataaagcccaagcat
taagccttttctcgacagagtagtggactgagccgacatgatccggctac
tgcgcgttgtttctgcaaacttatttttacaagacaggggaacccatgct
taggaagactcacattactgtgggtacactcttcccattttagtcccagc
attcaggaggcaggggcaggcagatctctgtgactctgaggccatcctgg
tctatactgcaagttccagactagccagggatatacagtgagaccttgac
tccaagaaaaatgttgttttactcaaatggtgtataactatcaaaaactt
caccagtaaagaaaatgtacacgtacacagaaattcattcaataataata
aatgagtccctgtcatttgtaacaaccctggtttgggatccaagtcagat
acagagaaggtagctgccaaggacctgggttcaccacagagaacctgaaa
aagattgctctcccggcagctgtgggggagaagcttggcatacataacag
gggccttagaagaagatcacagcactgttggtccaggagggtgtccgcaa
atgtgacggtgtgcaaaagcattctacaccttgcaaatacaggctttgaa
ggtccccctc
gaattccatggcaactgaacacatggcgtatatacaagcacacatatgca
caaataagaattttaaatcagtctttaaaaaacacaattgtatataaagg
attaacaaggatatggagaaattagaatccttatgcatttctggtaaaat
aacatttgctttagaaaagcttggaagtcacagaaaaagccaaaacaatt
atataatcagcaaatctactcttaagttattcaaaatactcaaagaccta
aaagcatgaccgcagatacctgtatacccatacacaaaatgtagcctctc
tctgcatgtaagagaatgtaggacaatggatcaaattctgtaaatcttgt
aacagggaggaaccttgaaaacattatgttaaaagaaataaactaggctg
gagagatggctcagaggttaagagcactgactgctcttccagaggtcctg
agttcaattctcagcaaccacatggtggctcacaaccatctgtaacaggc
tctgatgcactcttctagtgtgtgtctgaagatagctgcagtatattcat
aaataaagaataaataaatcttaaaaagaaaacaaagaaacaagacagaa
aaggacaaaaactgtgtgactcactaaatgagagatcaggaacaggcaat
tcacagaggtgaattgttgtcagggaatgggctaggaattgtgagcagtt
caattactacagtttttgcatggaaacagcaggaatggtcacacagtaat
gggaaataacatcactgaacctttaatcccagcactgggaggcagaagag
ctgatctctgtgattttgagtcagcctgtttacattgtgaagatcctgac
tcaaaacaaaaaaaaattaactaaatactgctactgaaccacatgctaaa
atatatacctaaatacatatataaattatttattctacatatttatttat
aacaaaatttatgcatcatcagactctagtgagtactgtagaaacctgat
agaagaactgtttctataactgaataataaattatagattccagaaaaat
aaatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58550052_58551200
seq2: B6Ng01-233L07.b_47_1206 (reverse)

seq1  GAGGGGGACTTTCAAAGCCTG-ATTTCCAGGTGTTTGAAATGC-TCTGCA  48
      ||||||||| ||||||||||| |||| || | || |  ||||| | ||||
seq2  GAGGGGGACCTTCAAAGCCTGTATTTGCAAG-GTGTAGAATGCTTTTGCA  49

seq1  CACGGTCACCATCTGCGGCCACCCTCCTGGACC-ACAGTGCTGTGATTCT  97
      ||| |||| ||| ||||| |||||||||||||| |||||||||||||  |
seq2  CACCGTCA-CATTTGCGGACACCCTCCTGGACCAACAGTGCTGTGATCTT  98

seq1  CTCTTA--GCCCCTG-TATGTATGCC-AGCTTCT-CCCCACAGCTGCCGG  142
      ||  ||  ||||||| |||||||||| ||||||| |||||||||||||||
seq2  CTTCTAAGGCCCCTGTTATGTATGCCAAGCTTCTCCCCCACAGCTGCCGG  148

seq1  GAGAGCAATC-TTTTCAGGTTCTCTGT-GTGAA-CCAGGTCCCTTGGCAG  189
      |||||||||| |||||||||||||||| ||||| |||||| |||||||||
seq2  GAGAGCAATCTTTTTCAGGTTCTCTGTGGTGAACCCAGGT-CCTTGGCAG  197

seq1  CTACC-TCTCTGTATCTGACTTGGATCCC-AACCA-GGTTGTTACAAATG  236
      ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CTACCTTCTCTGTATCTGACTTGGATCCCAAACCAGGGTTGTTACAAATG  247

seq1  ACAGGGACTCATTTATTATTATTGAATGAATTTCTGTGTACGTGTACATT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACTCATTTATTATTATTGAATGAATTTCTGTGTACGTGTACATT  297

seq1  TTCTTTACTGGTGAAGTTTTTGATAGTTATACACCATTTGAGTAAAACAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTGGTGAAGTTTTTGATAGTTATACACCATTTGAGTAAAACAA  347

seq1  CATTTTTCTTGGAGTCAAGGTCTCACTGTATATCCCTGGCTAGTCTGGAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTGGAGTCAAGGTCTCACTGTATATCCCTGGCTAGTCTGGAA  397

seq1  CTTGCAGTATAGACCAGGATGGCCTCAGAGTCACAGAGATCTGCCTGCCC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTATAGACCAGGATGGCCTCAGAGTCACAGAGATCTGCCTGCCC  447

seq1  CTGCCTCCTGAATGCTGGGACTAAAATGGGAAGAGTGTACCCACAGTAAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTGAATGCTGGGACTAAAATGGGAAGAGTGTACCCACAGTAAT  497

seq1  GTGAGTCTTCCTAAGCATGGGTTCCCCTGTCTTGTAAAAATAAGTTTGCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTTCCTAAGCATGGGTTCCCCTGTCTTGTAAAAATAAGTTTGCA  547

seq1  GAAACAACGCGCAGTAGCCGGATCATGTCGGCTCAGTCCACTACTCTGTC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACGCGCAGTAGCCGGATCATGTCGGCTCAGTCCACTACTCTGTC  597

seq1  GAGAAAAGGCTTAATGCTTGGGCTTTATTTTATTTATTTTAAAATTATTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGCTTAATGCTTGGGCTTTATTTTATTTATTTTAAAATTATTT  647

seq1  TTCATCCAGAGACTAGCATGCTTACTTGCTTAAAAAGTACATTGGTTAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAGAGACTAGCATGCTTACTTGCTTAAAAAGTACATTGGTTAAA  697

seq1  ATATTAAGAATTTGGCTGGCTGTGTTTATTCTGGCCAGCGGGATGCCTCG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGAATTTGGCTGGCTGTGTTTATTCTGGCCAGCGGGATGCCTCG  747

seq1  GGAATAAAGGTGTTCACTGCTAAGGCCAGTGGCATGAGTTAGATCCCTAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAGGTGTTCACTGCTAAGGCCAGTGGCATGAGTTAGATCCCTAG  797

seq1  AGTCACATGCCAGAGAGGAGAGGACTAGCACCTGCCCGCTGGCCTCTGAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGCCAGAGAGGAGAGGACTAGCACCTGCCCGCTGGCCTCTGAC  847

seq1  CTCCACTATGTGTACCCAGGCATGCACGCACATGCATGTAATATAAATAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTATGTGTACCCAGGCATGCACGCACATGCATGTAATATAAATAA  897

seq1  AAATAATGAGGTAGCAAGGCTGGTCTTTTTCTCACCCTTGAGCTCCTTGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAGGTAGCAAGGCTGGTCTTTTTCTCACCCTTGAGCTCCTTGG  947

seq1  TTTTATATGGCTATTAAATGGATGCCAGGAAAACCTGAAACAGATCAATC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGGCTATTAAATGGATGCCAGGAAAACCTGAAACAGATCAATC  997

seq1  CTTGACTGTAGCAATGTAAGTAAACAACATATGAAAGGAGGTAGAATGGT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGTAGCAATGTAAGTAAACAACATATGAAAGGAGGTAGAATGGT  1047

seq1  CAGTGCTCAGAGAACACATCCTCCAAGGACCACACTTGCCGTGATTCTGC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCAGAGAACACATCCTCCAAGGACCACACTTGCCGTGATTCTGC  1097

seq1  ACAATGTGCTGCAGACGGTACCATAGCTGAGGCAGATGCTGTGTGCAACT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGCTGCAGACGGTACCATAGCTGAGGCAGATGCTGTGTGCAACT  1147

seq1  GGCCTCTGAATTC  1149
      |||||||||||||
seq2  GGCCTCTGAATTC  1160

seq1: chr13_58341926_58342820
seq2: B6Ng01-233L07.g_245_1121

seq1  AGAAAAAGCCAAAACAATTATATAATCAGCAAATCTACTCTTAAGTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGCCAAAACAATTATATAATCAGCAAATCTACTCTTAAGTTATT  50

seq1  CAAAATACTCAAAGACCTAAAAGCATGACCGCAGATACCTGTATACCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACTCAAAGACCTAAAAGCATGACCGCAGATACCTGTATACCCAT  100

seq1  ACACAAAATGTAGCCTCTCTCTGCATGTAAGAGAATGTAGGACAATGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATGTAGCCTCTCTCTGCATGTAAGAGAATGTAGGACAATGGAT  150

seq1  CAAATTCTGTAAATCTTGTAACAGGGAGGAACCTTGAAAACATTATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTGTAAATCTTGTAACAGGGAGGAACCTTGAAAACATTATGTTA  200

seq1  AAAGAAATAAACTAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAAACTAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGAC  250

seq1  TGCTCTTCCAGAGGTCCTGAGTTCAATTCTCAGCAACCACATGGTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAGAGGTCCTGAGTTCAATTCTCAGCAACCACATGGTGGCTC  300

seq1  ACAACCATCTGTAACAGGCTCTGATGCACTCTTCTAGTGTGTGTCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTGTAACAGGCTCTGATGCACTCTTCTAGTGTGTGTCTGAAG  350

seq1  ATAGCTGCAGTATATTCATAAATAAAGAATAAATAAATCTTAAAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGCAGTATATTCATAAATAAAGAATAAATAAATCTTAAAAAGAAA  400

seq1  ACAAAGAAACAAGACAGAAAAGGACAAAAACTGTGTGACTCACTAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAACAAGACAGAAAAGGACAAAAACTGTGTGACTCACTAAATGA  450

seq1  GAGATCAGGAACAGGCAATTCACAGAGGTGAATTGTTGTCAGGGAATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGGAACAGGCAATTCACAGAGGTGAATTGTTGTCAGGGAATGGG  500

seq1  CTAGGAATTGTGAGCAGTTCAATTACTACAGTTTTTGCATGGAAACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATTGTGAGCAGTTCAATTACTACAGTTTTTGCATGGAAACAGCA  550

seq1  GGAATGGTCACACAGTAATGGGAAATAACATCACTGAACCTTTAATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTCACACAGTAATGGGAAATAACATCACTGAACCTTTAATCCCA  600

seq1  GCACTGGGAGGCAGAAGGAGGCTGATCTCTGTGATTTTGAGGTCAGCCTG  650
      |||||||||||||||||   |||||||||||||||||||| |||||||| 
seq2  GCACTGGGAGGCAGAAG--AGCTGATCTCTGTGATTTTGA-GTCAGCCT-  646

seq1  GTTTACATTGTG-AGATCCTGACTCAAAACAAAAAAAAATTAACTAAATA  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTTACATTGTGAAGATCCTGACTCAAAACAAAAAAAAATTAACTAAATA  696

seq1  CTGCTACTGAACCACATGCTTAAAATATATACCTAAATACATATAATAAA  749
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CTGCTACTGAACCACATGC-TAAAATATATACCTAAATACATAT-ATAAA  744

seq1  TTATTTATTCTACAATATTTATTTTATAACAAAATTTATGCCATCATTCA  799
      ||||||||||||| ||||||| |||||||||||||||||| ||||| |||
seq2  TTATTTATTCTAC-ATATTTA-TTTATAACAAAATTTATG-CATCA-TCA  790

seq1  GACTCTAAGTGAGTAACCTGTTAGGAAACCTGATAGAAG-ACTGTTTCTA  848
      |||||| ||||||||  ||||   ||||||||||||||| ||||||||| 
seq2  GACTCT-AGTGAGTA--CTGT--AGAAACCTGATAGAAGAACTGTTTCT-  834

seq1  ATAACTGAATAATAAATATATAGATACCCAGAAAATATAAATTCATA  895
      ||||||||||||||||| |||||||  |||||||| ||||| |||||
seq2  ATAACTGAATAATAAAT-TATAGAT-TCCAGAAAA-ATAAA-TCATA  877