BAC Information

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BAC

Clone NameB6Ng01-234A22
Chromosome13 (Build37)
Map Location 81,172,826 - 81,349,250
singlet/doubletdoublet
Overlap geneLOC218368, LOC666979, EG666984, Gpr98
Upstream geneLOC382780, EG666933, Arrdc3, LOC666964, LOC100043074
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234A22.bB6Ng01-234A22.g
ACCGA045928GA045929
length1,1401,125
definitionB6Ng01-234A22.b B6Ng01-234A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,172,826 - 81,173,971)(81,348,133 - 81,349,250)
sequence
gaattcctccttaccatcttctcttcttcctgttctggacactgctgcct
ttcactctaatccagcccatgtctttcctgaaaggtatgtatgaggaaga
gttgctctagtcctccctgacaaactcaaccacctcactacagtgtggaa
gaaacctgtggagacaaaatgaaacagatattattgtattacaaattcct
ttcattttcctgaatagcaatttcttgtcattatatacctaattgtttgt
cttagtcttttcttttaaattattataagtaagaatcaatagaattaagt
aaatatattacttaatttattacttggaatggaatttttttctggttagt
ggttgtggtcggtgtcacagattttacatgataagcaacacaaataagtg
gcttttcctaaaatatttgagttttcattattttgagttaattttggatt
ttaaaatttatttttatcgtgagtgtacggatgttttgcctgcaagtacc
tgtgtgtgcaatgtgcatgaccagtgtctgtggatgccagaggagggcat
catgaatcctggaaactggggttataggcagttgttagctgccttgctgg
ggttgggaatagaatccaggtcctctagaagacccttcagtgctcctaat
tattaagctatctctacagctcctggtgtgaattttttatctgaaagtta
acttctttttctacaatagagaaaggataaatgagaaatctccttctacc
tgatatcaccaaagatgggtagatgagggattagttgaaattcactcatg
aggatcttagttagtaaatccagttaaaaaattaaataaaaacccagtta
aacttaggtattatttgttgttagaaatcccagttaaacaacaataataa
aaaaaaatatttaacagtgaacagaaaagtttggtagagcacatgaaatc
tacgtttttttttttttgtgttttttgtttttttttgttcttgttcctgt
tttttccagaacacctccaaggatatgactttcctctcctggtactttat
cctttgtgaagaaccacttaaaccttctatccttgccagaccacccaacc
ttctactcctatatcaccatatactttccgaaggccctcc

gaattcttctattgtttagaaaatagcttggaggtcttgaagtttgcttc
cagctcacatagttcacagggtttcctggtggtgactcagaactcacgta
tttgcttatggccactttgtgaggaagatgtaaaatctgtgctgagtaga
tttttctcatctaggatcccagcaaattagtccagcatttaaaaaaaaga
agttacattttcaaacttgccacacggtggcctacttagaatgaggtacc
cccatgtgagatactagttaattaaatggatgcatgttatagaatcatca
aatattaacagctgttatcctgagtgttcattcagaatgatcacaaatat
tatcgttcagagtagttaccaatagcttctgcttaggcaaatactgagat
ttgaagatagttataacaaagtaaaatggattcaaatggggaaaatgcca
acctgaggcaggtataaaaatcagttgtcttatgcctcttaattactttt
ttcaatgtgcattggcatcttgcctgcatatatgtctatgaaggtaccag
agcccctagaattggagctacagacagttagttatgagctgccatgtggg
tgctagaattgaacctggcttctctaaaagcaatggtcttaattaccaaa
ccatctctctatgccctcttaattatttttttaatttttaaaaattaatt
gttttatttatttacatcccaagtgatgcccctcccagcaccacctccca
tggttgttctcccctctccctccccttcacccccgagagagagctcatat
atgctctttggtggttgttttttgggttttgggttttgggttaaaatttt
gtgataacagagtcttgctattttgcacaggttaagccttaggtacctgg
ctcaataaatcctccaccttcagctagctgaatagctagggctaaattac
tacttaaacctagcttaattcccaaacatcttaattgtaaggctgctgac
tgctagtaacttatttgaatcaatgtctggtaacctagtcatttgataaa
tggttattcccaaaactatgggaagaactggacaggtaatcttttcaatt
ttccttgaatcttaagcaagtcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81172826_81173971
seq2: B6Ng01-234A22.b_47_1186

seq1  GAATTCCTCCTTACCATCTTCTCTTCTTCCTGTTCTGGACACTGCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTACCATCTTCTCTTCTTCCTGTTCTGGACACTGCTGCCT  50

seq1  TTCACTCTAATCCAGCCCATGTCTTTCCTGAAAGGTATGTATGAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTAATCCAGCCCATGTCTTTCCTGAAAGGTATGTATGAGGAAGA  100

seq1  GTTGCTCTAGTCCTCCCTGACAAACTCAACCACCTCACTACAGTGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTAGTCCTCCCTGACAAACTCAACCACCTCACTACAGTGTGGAA  150

seq1  GAAACCTGTGGAGACAAAATGAAACAGATATTATTGTATTACAAATTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGTGGAGACAAAATGAAACAGATATTATTGTATTACAAATTCCT  200

seq1  TTCATTTTCCTGAATAGCAATTTCTTGTCATTATATACCTAATTGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCCTGAATAGCAATTTCTTGTCATTATATACCTAATTGTTTGT  250

seq1  CTTAGTCTTTTCTTTTAAATTATTATAAGTAAGAATCAATAGAATTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTTTTCTTTTAAATTATTATAAGTAAGAATCAATAGAATTAAGT  300

seq1  AAATATATTACTTAATTTATTACTTGGAATGGAATTTTTTTCTGGTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTACTTAATTTATTACTTGGAATGGAATTTTTTTCTGGTTAGT  350

seq1  GGTTGTGGTCGGTGTCACAGATTTTACATGATAAGCAACACAAATAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGTCGGTGTCACAGATTTTACATGATAAGCAACACAAATAAGTG  400

seq1  GCTTTTCCTAAAATATTTGAGTTTTCATTATTTTGAGTTAATTTTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTAAAATATTTGAGTTTTCATTATTTTGAGTTAATTTTGGATT  450

seq1  TTAAAATTTATTTTTATCGTGAGTGTACGGATGTTTTGCCTGCAAGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTATTTTTATCGTGAGTGTACGGATGTTTTGCCTGCAAGTACC  500

seq1  TGTGTGTGCAATGTGCATGACCAGTGTCTGTGGATGCCAGAGGAGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCAATGTGCATGACCAGTGTCTGTGGATGCCAGAGGAGGGCAT  550

seq1  CATGAATCCTGGAAACTGGGGTTATAGGCAGTTGTTAGCTGCCTTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCCTGGAAACTGGGGTTATAGGCAGTTGTTAGCTGCCTTGCTGG  600

seq1  GGTTGGGAATAGAATCCAGGTCCTCTAGAAGACCCTTCAGTGCTCCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAATAGAATCCAGGTCCTCTAGAAGACCCTTCAGTGCTCCTAAT  650

seq1  TATTAAGCTATCTCTACAGCTCCTGGTGTGAATTTTTTATCTGAAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCTATCTCTACAGCTCCTGGTGTGAATTTTTTATCTGAAAGTTA  700

seq1  ACTTCTTTTTCTACAATAGAGAAAGGATAAATGAGAAATCTCCTTCTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTTCTACAATAGAGAAAGGATAAATGAGAAATCTCCTTCTACC  750

seq1  TGATATCACCAAAGATGGGTAGATGAGGGATTAGTTGAAATTCACTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCACCAAAGATGGGTAGATGAGGGATTAGTTGAAATTCACTCATG  800

seq1  AGGATCTTAGTTAGTAAATCCAGTTAAAAAATTAAATAAAAACCCAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTAGTTAGTAAATCCAGTTAAAAAATTAAATAAAAACCCAGTTA  850

seq1  AACTTAGGTATTATTTGTTGTTAGAAATCCCAGTTAAACAACAATAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGTATTATTTGTTGTTAGAAATCCCAGTTAAACAACAATAATAA  900

seq1  AAAAAAATATTTAACAGTGAACAAGAAAAGTTTGGTAGAGCACATGAAAT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAAAATATTTAACAGTGAAC-AGAAAAGTTTGGTAGAGCACATGAAAT  949

seq1  CTACGGTTTTTTTTTTTTTGTTGTTTTTTGTTTTTTTTTTGTTTCTTTGT  1000
      |||| ||||||||||||||| ||||||||| ||||||||||||   ||||
seq2  CTAC-GTTTTTTTTTTTTTG-TGTTTTTTG-TTTTTTTTTGTT--CTTGT  994

seq1  TTCTTTGTTTTTTTCTATGTAACAC--TCAAGGATATGACTTT-CTCTCC  1047
      | |  |||||||| |     |||||   ||||||||||||||| ||||||
seq2  TCC--TGTTTTTTCC---AGAACACCTCCAAGGATATGACTTTCCTCTCC  1039

seq1  TGGTACTTTATC--TTGTGAAGAACACTTTAAAACTTCTAATCCTTG-CA  1094
      ||||||||||||  |||||||||||   ||||| ||||| ||||||| ||
seq2  TGGTACTTTATCCTTTGTGAAGAACCACTTAAACCTTCT-ATCCTTGCCA  1088

seq1  GACCACCCAA-CTTCTAACTCTATAATCAACCATATACTTTCAGAA-GCC  1142
      |||||||||| ||||||   |||| ||| ||||||||||||| ||| |||
seq2  GACCACCCAACCTTCTACTCCTAT-ATC-ACCATATACTTTCCGAAGGCC  1136

seq1  CTCC  1146
      ||||
seq2  CTCC  1140


seq1: chr13_81348133_81349250
seq2: B6Ng01-234A22.g_64_1188 (reverse)

seq1  TTTGCACTTGCTTAAAGATCCAAAGGAAAAAAG-AAAGATAAACTGGCCA  49
      |||| |||||||| ||||| | ||||||||  | |||||| | ||| |||
seq2  TTTG-ACTTGCTT-AAGATTC-AAGGAAAATTGAAAAGATTACCTGTCCA  47

seq1  GTTCTT-CCATAGTTTT-GGAATAACCA-TTATCAAATGACTAG--TACC  94
      |||||| |||||||||| |||||||||| |||||||||||||||  ||||
seq2  GTTCTTCCCATAGTTTTGGGAATAACCATTTATCAAATGACTAGGTTACC  97

seq1  AAGACATTGA-TCAAATAAAGTTACTAGCAGTCAGCAGCC-TACAATTAA  142
       ||||||||| |||||| |||||||||||||||||||||| |||||||||
seq2  -AGACATTGATTCAAAT-AAGTTACTAGCAGTCAGCAGCCTTACAATTAA  145

seq1  GATGTTTGGG-ATTAAGCTAGGTTT-AGTAGTAATTTAGCCCTAGCTATT  190
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GATGTTTGGGAATTAAGCTAGGTTTAAGTAGTAATTTAGCCCTAGCTATT  195

seq1  CAGCTAGCTGAAGGTGGAGGATTTATTGAGCCAGGTACCTAAGGC-TAAC  239
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGCTAGCTGAAGGTGGAGGATTTATTGAGCCAGGTACCTAAGGCTTAAC  245

seq1  CTGTGCAAAATAGCAAGACTCTGTTATCACAAAATTTTAA-CCAAAACCC  288
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGTGCAAAATAGCAAGACTCTGTTATCACAAAATTTTAACCCAAAACCC  295

seq1  AAAACCCAAAAAACAACCACCAAAGAGCATATATGAGCTCTCTCTCGGGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAAAAACAACCACCAAAGAGCATATATGAGCTCTCTCTCGGGG  345

seq1  GTGAAGGGGAGGGAGAGGGGAGAACAACCATGGGAGGTGGTGCTGGGAGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGGAGGGAGAGGGGAGAACAACCATGGGAGGTGGTGCTGGGAGG  395

seq1  GGCATCACTTGGGATGTAAATAAATAAAACAATTAATTTTTAAAAATTAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCACTTGGGATGTAAATAAATAAAACAATTAATTTTTAAAAATTAA  445

seq1  AAAAATAATTAAGAGGGCATAGAGAGATGGTTTGGTAATTAAGACCATTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTAAGAGGGCATAGAGAGATGGTTTGGTAATTAAGACCATTG  495

seq1  CTTTTAGAGAAGCCAGGTTCAATTCTAGCACCCACATGGCAGCTCATAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAGAAGCCAGGTTCAATTCTAGCACCCACATGGCAGCTCATAAC  545

seq1  TAACTGTCTGTAGCTCCAATTCTAGGGGCTCTGGTACCTTCATAGACATA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTCTGTAGCTCCAATTCTAGGGGCTCTGGTACCTTCATAGACATA  595

seq1  TATGCAGGCAAGATGCCAATGCACATTGAAAAAAGTAATTAAGAGGCATA  638
      |||||||||||||||||||||                  |||||||||||
seq2  TATGCAGGCAAGATGCCAATGNNNNNNNNNNNNNNNNNNTAAGAGGCATA  645

seq1  AGACAACTGATTTTTATACCTGCCTCAGGTTGGCATTTTCCCCATTTGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTGATTTTTATACCTGCCTCAGGTTGGCATTTTCCCCATTTGAA  695

seq1  TCCATTTTACTTTGTTATAACTATCTTCAAATCTCAGTATTTGCCTAAGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTACTTTGTTATAACTATCTTCAAATCTCAGTATTTGCCTAAGC  745

seq1  AGAAGCTATTGGTAACTACTCTGAACGATAATATTTGTGATCATTCTGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTATTGGTAACTACTCTGAACGATAATATTTGTGATCATTCTGAA  795

seq1  TGAACACTCAGGATAACAGCTGTTAATATTTGATGATTCTATAACATGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTCAGGATAACAGCTGTTAATATTTGATGATTCTATAACATGCA  845

seq1  TCCATTTAATTAACTAGTATCTCACATGGGGGTACCTCATTCTAAGTAGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAATTAACTAGTATCTCACATGGGGGTACCTCATTCTAAGTAGG  895

seq1  CCACCGTGTGGCAAGTTTGAAAATGTAACTTCTTTTTTTTAAATGCTGGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTGTGGCAAGTTTGAAAATGTAACTTCTTTTTTTTAAATGCTGGA  945

seq1  CTAATTTGCTGGGATCCTAGATGAGAAAAATCTACTCAGCACAGATTTTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTGCTGGGATCCTAGATGAGAAAAATCTACTCAGCACAGATTTTA  995

seq1  CATCTTCCTCACAAAGTGGCCATAAGCAAATACGTGAGTTCTGAGTCACC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTCACAAAGTGGCCATAAGCAAATACGTGAGTTCTGAGTCACC  1045

seq1  ACCAGGAAACCCTGTGAACTATGTGAGCTGGAAGCAAACTTCAAGACCTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAACCCTGTGAACTATGTGAGCTGGAAGCAAACTTCAAGACCTC  1095

seq1  CAAGCTATTTTCTAAACAATAGAAGAATTC  1118
      ||||||||||||||||||||||||||||||
seq2  CAAGCTATTTTCTAAACAATAGAAGAATTC  1125


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