BAC Information

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BAC

Clone NameB6Ng01-234D04
Chromosome13 (Build37)
Map Location 47,111,427 - 47,112,458
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1
Downstream geneTpmt, Aof1, Dek, LOC100039761, Ibrdc2, 4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234D04.b
ACCGA046028
length1,041
definitionB6Ng01-234D04.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactctttttgtttttcttttcgacttttttaaagtggggatac
gagggaattattttaaaatgtgggtttccttacatttctgttgcacaaga
ctggttctaaaaatagtccagttttgtatccagactgtgtttcccgagtt
aaaaactgtttctgaggggctggaaagaaggcttaacctgagagcacttg
ctgctcttgcagaagacttgggtttgagtctcaggatccatattgtggct
cacagccatctgtaactccagtttcctggaaccgacagccccgctcccac
ctcctatgacaccatgcatactgtatagaaaacccttatacccaaaaagt
aaaataaatctattttcttattatttctgaggggctggagaggttgctca
atagttacataacgctggctgcccatctggagaatccacattaggaaccc
tcccacattcagtggctcacacctgcctataattctagctcaccggtatc
taacatcctcttctggcctccataagttcacacccacgtccacacggaca
cacagacagcctcatgcacacacactaataaaaaacagtttttataaatt
actaataaaaaaactttctatgaaatattattttagttggtgtcttattt
agaatgaaaatgcattttgaaatcataatatcagcttggttattctggtc
taacattcaatctctgaaatatgtagtatttgatttaaaaacaaaaaaaa
aaactgcttgttttcctcggccttcctaagattttccctctcgaagagtg
ttaacacaggcttgagtcctccactgctttggtaattctatggcacaaga
cggaaaaccatcatgaacgccgactttttgtgaataactactgttcttaa
tacatgggactcggcaatcatctttgttcatgttagacagtctatttccg
aaaatgacagctttcaataccctctattgtattttcgtaagattatactg
accaacaggattaggcatactgctcagatcatcatttattg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47111427_47112458
seq2: B6Ng01-234D04.b_40_1080 (reverse)

seq1  CAATAAA-GATGATCGTGGAAGTAT-CCTAAT-CTTATGGTCAGTATAAT  47
      ||||||| |||||||   | ||||| |||||| ||  |||||||||||||
seq2  CAATAAATGATGATCTGAGCAGTATGCCTAATCCTGTTGGTCAGTATAAT  50

seq1  CTTCCGAAA--TCCATTGGGGGTATTCAAAGCTCTCATTTTCGGAGTTA-  94
      ||| |||||   | || | ||||||| |||||| |||||||||||  || 
seq2  CTTACGAAAATACAATAGAGGGTATTGAAAGCTGTCATTTTCGGAAATAG  100

seq1  ACTGTCTTACATGAAC-AAGGTGCTGGCC-AAAACCATGTATT-AGAACA  141
      ||||||| |||||||| ||| || | ||| |   ||||||||| ||||||
seq2  ACTGTCTAACATGAACAAAGATGATTGCCGAGTCCCATGTATTAAGAACA  150

seq1  -TTCTTATTCACAAAAAGGCTGTGATCATGATTGGTTACCCTCTTGTTCC  190
       |  |||||||||||||| | | | ||||||| | || || |||||| ||
seq2  GTAGTTATTCACAAAAAGTCGGCGTTCATGATGGTTTTCCGTCTTGTGCC  200

seq1  ATAGACTT-CCAAGAAACTGGAGGACTCAAGCCTGTGTTAACACTCTTCG  239
      ||||| || ||||   | ||||||||||||||||||||||||||||||||
seq2  ATAGAATTACCAAAGCAGTGGAGGACTCAAGCCTGTGTTAACACTCTTCG  250

seq1  AGAGAGAAATTCTTTGGAAGGCCAAGGAAAACAAGCAGTTTTTTTTTTTC  289
      |||| |||| |||| |||||||| ||||||||||||||||||||||||| 
seq2  AGAGGGAAAATCTTAGGAAGGCCGAGGAAAACAAGCAGTTTTTTTTTTTG  300

seq1  TTTTTTAATCAACTACTACATATCTCAGAGATTGAATGTTAGACCAGAAT  339
      ||||| |||||| |||||||||| ||||||||||||||||||||||||||
seq2  TTTTTAAATCAAATACTACATATTTCAGAGATTGAATGTTAGACCAGAAT  350

seq1  AACCAAGCTGATACTATGATTTCAAAATGCATTTCCATTCTAAATAAGAC  389
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  AACCAAGCTGATATTATGATTTCAAAATGCATTTTCATTCTAAATAAGAC  400

seq1  ACCAACTAAAATAATATCTCATAGAAAGTTTTTTTATTAGTAATTTAAAA  439
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  ACCAACTAAAATAATATTTCATAGAAAGTTTTTTTATTAGTAATTTATAA  450

seq1  AAACTGTTTTTTATTAGTGTGTGTGCACGAGGCTGTCTGTGTGTCTGTGT  489
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AAACTGTTTTTTATTAGTGTGTGTGCATGAGGCTGTCTGTGTGTCCGTGT  500

seq1  GGACGTCTGTGTGAACCTCTGGAGGCCAGAAGAGGATGTTAGATACCCGA  539
      ||||||  |||||||| | |||||||||||||||||||||||||||| | 
seq2  GGACGTGGGTGTGAACTTATGGAGGCCAGAAGAGGATGTTAGATACCGGT  550

seq1  GAGCTAGAATTATAGGCAGGTGTGAGCCACTGAATGTGGGAGGGTTCCTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGAATTATAGGCAGGTGTGAGCCACTGAATGTGGGAGGGTTCCTA  600

seq1  ATGTGGATTCTCCAGACTGGGCAGCCAGCGTTATGTAACTATTGAGCAAC  639
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGTGGATTCTCCAGA-TGGGCAGCCAGCGTTATGTAACTATTGAGCAAC  649

seq1  CTCTCCAGCCCCTCAGAAATAATAAGAAAATAGATTTATTTTACTTTTTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCCTCAGAAATAATAAGAAAATAGATTTATTTTACTTTTTG  699

seq1  TGTATAAGTGTTTTCTCTACAGTATGCCTGGTGTCATAGGAGGTCGGAGC  739
       ||||||| ||||||| |||||||||| |||||||||||||||| |||||
seq2  GGTATAAGGGTTTTCTATACAGTATGCATGGTGTCATAGGAGGTGGGAGC  749

seq1  GGGGCTGTCGGTTCCAGGAAACTGGAGTTACAGATGGCTGTGAGCCACAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTCGGTTCCAGGAAACTGGAGTTACAGATGGCTGTGAGCCACAA  799

seq1  TATGGATCCTGAGACTCAAACCCAAGTCTTCTGCAAGAGCAGCAAGTGCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATCCTGAGACTCAAACCCAAGTCTTCTGCAAGAGCAGCAAGTGCT  849

seq1  CTCACGTTAAGCCTTCTTTCCAGCCCCTCAGAAACAGTTTTTAACTCGGG  889
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTAAGCCTTCTTTCCAGCCCCTCAGAAACAGTTTTTAACTCGGG  899

seq1  AAACACAGTCTGGATACAAAACTGGACTATTTTTAGAACCAGTCTTGTGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGTCTGGATACAAAACTGGACTATTTTTAGAACCAGTCTTGTGC  949

seq1  AACAGAAATGTAAGGAAACCCACATTTTAAAATAATTCCCTTGTATCCCC  989
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACAGAAATGTAAGGAAACCCACATTTTAAAATAATTCCCTCGTATCCCC  999

seq1  ACTTTTAAAAAGTTGAAAAGAAAAACAAAATTTAGTTGAATTC  1032
      ||||| ||||||| ||||||||||||||||   ||||||||||
seq2  ACTTTAAAAAAGTCGAAAAGAAAAACAAAA-AGAGTTGAATTC  1041