BAC Information

Click to search

BAC

Clone NameB6Ng01-235A05
Chromosome13 (Build37)
Map Location 8,377,154 - 8,490,281
singlet/doubletdoublet
Overlap geneAdarb2, EG666941
Upstream geneEG623516, LOC791083, LOC382722
Downstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235A05.bB6Ng01-235A05.g
ACCGA046602GA046603
length1,2091,123
definitionB6Ng01-235A05.b B6Ng01-235A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,377,154 - 8,378,380)(8,489,170 - 8,490,281)
sequence
gaattctagagtaaaattagaaacagaaaaatagactgcataataaccca
gaggcaacctgtgttgacctcattatgtgttacagaggttgggtgcccca
gctgtgctcccatagggactgagaaggctagttccccaagcaacacattc
aatagacatgtgctacacatggtgcttgcgatgtgtctgtgtcttagctt
cctttagctctctctctctctctctctctctctctctctccctccctcct
ccctcccccccccacacacacataagactactctgctctcaagcccatca
aaatcatcatgaaaattataaacataatttcctcagaggaaagagaatag
ccatattttgtcctaattctacatgtaaataatgccctagcctcaaaagt
cagcgtttcagaaggcagtgccggcaccggtcaagaaaacacacttgcct
tttactgagcagtattttcaagcacattatgaaaacggtggcaagttggc
tatcgggtggagatctacggcttcccctccctcccacattcctttaacta
gctgtgatcttttactgaaactgctggattaaacttcaaatgacccacat
tgattggtgtgaaatttcatttgtgtacagctgtgctagctggagactct
cccatagatgagtaattacaactgttcttctgccatcctggtgtacggtc
tccttcatcccttacatctgactgttttctgaagactcactagccctggt
gcaccccaagaacaaggttaattcaagctagtctcgtagattgtagaggt
tagacccactacttctggtaaatgtccccacactgtctacactgccactg
gatctggtaggctgctacgaagtaatactcttactagttttcaggaacca
gtttgtttcttgctggtactttgcgatataagcagttattttcccaggca
tatatattgttaccttgtacaattcctgtgaacagagtatcacaaccaat
acttgtgacatggaatcctccaataatacctttgttgagacaggtttcct
gtagcccaagctgtcatgaatgtgctggtgtagatgaaccttgaactctg
gatcttttcttctttgtttggtattttaccctaactgcatgcgggaataa
gccttcacataccacctaccttgtacagtgtagtgtacctcagggccgtg
gtgcaagtg

gaattcctcatttgtcagcttgcccctcactctattagctaataacctat
tagttcttaaataactggggctgtactcacctaaaaggacgcgacagtga
aatgccatctagcagtgcacataattgtcccctaatgtacatttaatatt
ctgtattcagtttgcttaaagtaggatagaccaaatattcaatggaccaa
atatgaagaaaaaagtaattttgtgtacactatgctgacaggtttttatg
gtcatatttaaatgctaatttagacagtatatattcttttgtttttgctc
atcttgactatgatgagagaagtgggtagtttgactcaattgaattaagt
tccttaaaaatctgtgcctgctgcatgtcctggatgggagtgtgaagaaa
tagtgtcagccacaattttacaattcagaccttgacaaagaactgctatc
ccaatgacatcatgaaaaatgcctaaaacccaatttgtttccatgtcatc
gttgctcccggtcgagttagctcctgtaggtcattttccatttcagataa
cctgtcctattgtctttacaagtacacgtgtacttgtcaagcctgcggtc
ctaatgtttggctcagaaaatatggtcattgtaattatagttcttcccag
ggtcgaggaaatgagagtccaactcataatccttttatcatcgaggtgga
tgatttatttcttaccaaatgagaatggagaaatttcaagggcgatttat
ctaatttttcctccacatagattttttttttttttttttaagaaacttgc
cccatcagaaaaagcttatttccaagaaagaatctctaaagatactgaat
tcttgtggctttcctggtccttgatagaccttgagtttaacgtcccagtg
aagcagcaagccgagtttttgactgtcccctgtcatcccagatagcacca
gagatcatcgctaagttgtctagtgattattttgctctcaggtttctgtt
tccaagccaaatgagcatcctctcatcttcttctgcccgatctttttgta
tcaatactactgttctctttgacttatgcctgatgtgtgggagtcaattc
taggcctccacctaagttaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_8377154_8378380
seq2: B6Ng01-235A05.b_49_1257

seq1  GAATTCTAGAGTAAAATTAGAAACAGAAAAATAGACTGCATAATAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGTAAAATTAGAAACAGAAAAATAGACTGCATAATAACCCA  50

seq1  GAGGCAACCTGTGTTGACCTCATTATGTGTTACAGAGGTTGGGTGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACCTGTGTTGACCTCATTATGTGTTACAGAGGTTGGGTGCCCCA  100

seq1  GCTGTGCTCCCATAGGGACTGAGAAGGCTAGTTCCCCAAGCAACACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTCCCATAGGGACTGAGAAGGCTAGTTCCCCAAGCAACACATTC  150

seq1  AATAGACATGTGCTACACATGGTGCTTGCGATGTGTCTGTGTCTTAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACATGTGCTACACATGGTGCTTGCGATGTGTCTGTGTCTTAGCTT  200

seq1  CCTTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCT  250

seq1  CCCTCCCCCCCCCACACACACATAAGACTACTCTGCTCTCAAGCCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCCCCCACACACACATAAGACTACTCTGCTCTCAAGCCCATCA  300

seq1  AAATCATCATGAAAATTATAAACATAATTTCCTCAGAGGAAAGAGAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCATGAAAATTATAAACATAATTTCCTCAGAGGAAAGAGAATAG  350

seq1  CCATATTTTGTCCTAATTCTACATGTAAATAATGCCCTAGCCTCAAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTGTCCTAATTCTACATGTAAATAATGCCCTAGCCTCAAAAGT  400

seq1  CAGCGTTTCAGAAGGCAGTGCCGGCACCGGTCAAGAAAACACACTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTTCAGAAGGCAGTGCCGGCACCGGTCAAGAAAACACACTTGCCT  450

seq1  TTTACTGAGCAGTATTTTCAAGCACATTATGAAAACGGTGGCAAGTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAGCAGTATTTTCAAGCACATTATGAAAACGGTGGCAAGTTGGC  500

seq1  TATCGGGTGGAGATCTACGGCTTCCCCTCCCTCCCACATTCCTTTAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGGTGGAGATCTACGGCTTCCCCTCCCTCCCACATTCCTTTAACTA  550

seq1  GCTGTGATCTTTTACTGAAACTGCTGGATTAAACTTCAAATGACCCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATCTTTTACTGAAACTGCTGGATTAAACTTCAAATGACCCACAT  600

seq1  TGATTGGTGTGAAATTTCATTTGTGTACAGCTGTGCTAGCTGGAGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTGTGAAATTTCATTTGTGTACAGCTGTGCTAGCTGGAGACTCT  650

seq1  CCCATAGATGAGTAATTACAACTGTTCTTCTGCCATCCTGGTGTACGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGATGAGTAATTACAACTGTTCTTCTGCCATCCTGGTGTACGGTC  700

seq1  TCCTTCATCCCTTACATCTGACTGTTTTCTGAAGACTCACTAGCCCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATCCCTTACATCTGACTGTTTTCTGAAGACTCACTAGCCCTGGT  750

seq1  GCACCCCAAGAACAAGGTTAATTCAAGCTAGTCTCGTAGATTGTAGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCAAGAACAAGGTTAATTCAAGCTAGTCTCGTAGATTGTAGAGGT  800

seq1  TAGACCCACTACTTCTGGTAAATGTCCCCACACTGTCTACACTGCCACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCACTACTTCTGGTAAATGTCCCCACACTGTCTACACTGCCACTG  850

seq1  GATCTGGTAGGCTGCTACGAAGTAATACTCTTACTAGTTTTCAAGGAACC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATCTGGTAGGCTGCTACGAAGTAATACTCTTACTAGTTTTC-AGGAACC  899

seq1  AGTTTGTTTCTTGCTGGTAC-TTGCGATATAAGCAGTTA-TTTCCCAGGC  948
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  AGTTTGTTTCTTGCTGGTACTTTGCGATATAAGCAGTTATTTTCCCAGGC  949

seq1  ATATATATTGTTACCTTGTACAATTCCTGTGAACAGAGTATCACAACCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTGTTACCTTGTACAATTCCTGTGAACAGAGTATCACAACCAA  999

seq1  TACTTGTGACATGG-ATCCTCCAAATAATACCTTTTGTTTGAGACAAGGT  1047
      |||||||||||||| ||||||| ||||||||||||   ||||||| ||||
seq2  TACTTGTGACATGGAATCCTCC-AATAATACCTTT--GTTGAGAC-AGGT  1045

seq1  TTCCTGTAGCCCAGGCTGGCCTTGAATGTGCT-GTGTAGGATG-ACCTTG  1095
      ||||||||||||| ||| | | |||||||||| ||||| |||| ||||||
seq2  TTCCTGTAGCCCAAGCT-GTCATGAATGTGCTGGTGTA-GATGAACCTTG  1093

seq1  AACTCCTGGTTTTTTTCTTTTCTTTTGTTTTGTTTTTTTACCTCTACTTT  1145
      |||| |||| | |||||  ||||||   |||| | ||||||| |||  | 
seq2  AACT-CTGGATCTTTTC--TTCTTT--GTTTGGTATTTTACC-CTAACTG  1137

seq1  CCCAATGCTGGGATTATAGGCCTTCACCATTACACACCTATCTTTGTCAC  1195
      |   |||| ||||  ||| ||||||||   ||| |||||| | |||| ||
seq2  C---ATGC-GGGA--ATAAGCCTTCAC--ATAC-CACCTA-CCTTGT-AC  1176

seq1  GGTGGTATGAAACTCAGGGCCCT-GTGCAAGTG  1227
       |||   || | ||||||||| | |||||||||
seq2  AGTGTAGTGTACCTCAGGGCCGTGGTGCAAGTG  1209


seq1: chr13_8489170_8490281
seq2: B6Ng01-235A05.g_67_1189 (reverse)

seq1  TACCTA------GTGGAGGGCTAGAATGGACTCC--CACATCA-GCAT-A  40
      ||||||      ||||||| ||||||| ||||||  ||||||| |||| |
seq2  TACCTAACTTAGGTGGAGGCCTAGAATTGACTCCCACACATCAGGCATAA  50

seq1  GTCAAAGAGAACAGTAGTTATGATAC-AAAAGATCGGGCAG-AGAAGATG  88
      ||||||||||||||||||  |||||| |||||||||||||| ||||||||
seq2  GTCAAAGAGAACAGTAGTATTGATACAAAAAGATCGGGCAGAAGAAGATG  100

seq1  AGAGGATGCTCATTTGGCTTTGGAAAACAGAAACCTGAGAGCAAAATAAT  138
      ||||||||||||||||||||  | ||||||||||||||||||||||||||
seq2  AGAGGATGCTCATTTGGCTT--GGAAACAGAAACCTGAGAGCAAAATAAT  148

seq1  CACTAAGACAACTTAGCGATGATCTCTGGTGCTATCTGGGATGACAGGGG  188
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACT-AGACAACTTAGCGATGATCTCTGGTGCTATCTGGGATGACAGGGG  197

seq1  ACAGTCAAAAACTCGGCTTGCTGCTTCACTGGGACGTTAAACTCAAGGTC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAAAACTCGGCTTGCTGCTTCACTGGGACGTTAAACTCAAGGTC  247

seq1  TATCAAGGACCAGGAAAGCCACAAGAATTCAGTATCTTTAGAGATTCTTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGGACCAGGAAAGCCACAAGAATTCAGTATCTTTAGAGATTCTTT  297

seq1  CTTGGAAATAAGCTTTTTCTGATGGGGCAAGTTTCTT--AAAAAAAAAAA  336
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTTGGAAATAAGCTTTTTCTGATGGGGCAAGTTTCTTAAAAAAAAAAAAA  347

seq1  AAAAATCTATGTGGAGGAAAAATTAGATAAATCGCCCTTGAAATTTCTCC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTATGTGGAGGAAAAATTAGATAAATCGCCCTTGAAATTTCTCC  397

seq1  ATTCTCATTTGGTAAGAAATAAATCATCCACCTCGATGATAAAAGGATTA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTTGGTAAGAAATAAATCATCCACCTCGATGATAAAAGGATTA  447

seq1  TGAGTTGGACTCTCATTTCCTCGACCCTGGGAAGAACTATAATTACAATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGACTCTCATTTCCTCGACCCTGGGAAGAACTATAATTACAATG  497

seq1  ACCATATTTTCTGAGCCAAACATTAGGACCGCAGGCTTGACAAGTACACG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTTCTGAGCCAAACATTAGGACCGCAGGCTTGACAAGTACACG  547

seq1  TGTACTTGTAAAGACAATAGGACAGGTTATCTGAAATGGAAAATGACCTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGTAAAGACAATAGGACAGGTTATCTGAAATGGAAAATGACCTA  597

seq1  CAGGAGCTAACTCGACCGGGAGCAACGATGACATGGAAACAAATTGGGTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTAACTCGACCGGGAGCAACGATGACATGGAAACAAATTGGGTT  647

seq1  TTAGGCATTTTTCATGATGTCATTGGGATAGCAGTTCTTTGTCAAGGTCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATTTTTCATGATGTCATTGGGATAGCAGTTCTTTGTCAAGGTCT  697

seq1  GAATTGTAAAATTGTGGCTGACACTATTTCTTCACACTCCCATCCAGGAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTAAAATTGTGGCTGACACTATTTCTTCACACTCCCATCCAGGAC  747

seq1  ATGCAGCAGGCACAGATTTTTAAGGAACTTAATTCAATTGAGTCAAACTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCAGGCACAGATTTTTAAGGAACTTAATTCAATTGAGTCAAACTA  797

seq1  CCCACTTCTCTCATCATAGTCAAGATGAGCAAAAACAAAAGAATATATAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCTCTCATCATAGTCAAGATGAGCAAAAACAAAAGAATATATAC  847

seq1  TGTCTAAATTAGCATTTAAATATGACCATAAAAACCTGTCAGCATAGTGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAATTAGCATTTAAATATGACCATAAAAACCTGTCAGCATAGTGT  897

seq1  ACACAAAATTACTTTTTTCTTCATATTTGGTCCATTGAATATTTGGTCTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATTACTTTTTTCTTCATATTTGGTCCATTGAATATTTGGTCTA  947

seq1  TCCTACTTTAAGCAAACTGAATACAGAATATTAAATGTACATTAGGGGAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTTAAGCAAACTGAATACAGAATATTAAATGTACATTAGGGGAC  997

seq1  AATTATGTGCACTGCTAGATGGCATTTCACTGTCGCGTCCTTTTAGGTGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTGCACTGCTAGATGGCATTTCACTGTCGCGTCCTTTTAGGTGA  1047

seq1  GTACAGCCCCAGTTATTTAAGAACTAATAGGTTATTAGCTAATAGAGTGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCCCAGTTATTTAAGAACTAATAGGTTATTAGCTAATAGAGTGA  1097

seq1  GGGGCAAGCTGACAAATGAGGAATTC  1112
      ||||||||||||||||||||||||||
seq2  GGGGCAAGCTGACAAATGAGGAATTC  1123


| Home | SequenceCutter | Blast | Download |