BAC Information

Click to search

BAC

Clone NameB6Ng01-235E24
Chromosome13 (Build37)
Map Location 70,748,854 - 70,910,185
singlet/doubletdoublet
Overlap geneBC018507, EG620473, Adamts16
Upstream geneSrd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
Downstream gene8030423J24Rik, LOC627230, LOC100042360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235E24.bB6Ng01-235E24.g
ACCGA046818GA046819
length1,1551,175
definitionB6Ng01-235E24.b B6Ng01-235E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,909,046 - 70,910,185)(70,748,854 - 70,750,023)
sequence
gaattctcaaaattactgaagtctaggtagggagttgccagcattctcat
acacagcagacggggtttggcccttctgcataaactgtaaaactgaagcc
cacaataaacatagccctgggccagaagaaaaccagtctgcgggatgtga
cagagacagggcttagctgccgtgacatgagggtgagatgtgtgcgctac
ccctaactttgctagactgtggcatataatcgtactaagcacaggaatct
gtgagtgagtcttaggcccgagaaagttcccaagacagtgtagctttcca
tattcagctttcccagttttatccagagagcagacagaaggtccctacaa
aagcttcagatacccataggaactgtgaggccttgaaccatgagggagct
ctgaccccccagggccttgtacagcagtgttcctacagaacacattgagt
cctggactttgagcatttcttctaccaacttaaagacaccgttttgtatt
catgagaatgttacatagtgttagaaaacactactgatcactttatattc
ctgtaatgcagtctttatacagtagatcataagcaccgtaatccagccaa
caaatgctcattgaatacctactatgtaccaacaactatataaaggaaat
attagacaacaggtactagaaaaataacagtaaagcattaaataataata
atgataatgatgatgatgattttgaagtatttttaccaaagacgaacatt
aaaatttctttcaaaggtccataatggtctcccacaccaggggcaggtag
atcactgtgagttcaaagacagcctggtatattagcatattctaggagag
acagggaaaccttggtggggcctgaatctaaaaacacaaaatgtctttga
atgtattgctctgtgggatttaattttagggggtagacaaccgcagaaga
atctgaacctcgagcgaaaatcaccgagccttaagtgtcttttcttatct
gtggtttgtggtggtgtatttcctttttaagatcagacttatgcaactcc
tacttgtattcgcgaaggattggattttctttcttttctttgtccaatat
aagtgaaagatgggacctctcatgcctcggaaggattagcccgtatgttt
gtata

gaattcctggaactaaatgcagaagaaattagaaaaacaaaaaaacccca
aaaccccacaaaccttccctgggccaactggaagcaaaggagatcgacta
cggatgtgatcctcactgaatcacagtgtgccatgcattctgtccctagt
ccccagcacagtgtcctgagcagaaatggagtctcagactagatctagtg
taggtggaaaatgggccatttccatgagtcccacagtttgttaacaggat
tggggaaaagttcagatggaatcattcttgtgtgaaaataaagatgactt
aaaagaagctattgtgtaggacaggaggattacttggtcttccacataca
cctgccaagcatgccttagtttcccctccaagtgctctgaggagagctgc
taccaaaggctgacagttatctgctggggtttagagtcacactccttcat
acatttccaagtccccactctccgctacacactggaggctgaaataccag
aagcctgtagcagatgctgtcacactcatgcctcaggagcgtctgtagtg
tctctcacctgggatccgtctgccgccctccccggagagtctgtgcgcag
tgttcacacagagccacagctccttcaggagaactttcaccttccctgta
aaacagcaacgcacagctatcaggcccagtgctgtgacaggagacttctt
acccaagcagggagcagcacccaaaccttcccactgcgaccactgcgcta
tcaaccaagtcaggcaaggcttccgctacaaccccaagactcgacatagg
cttgtttgctctttttctttcttctagaacagcggttctcaatcttttcc
aatgctgtgaccctttcaatatacagctctgcatgttggggtgaccccca
atcataaaatgatttttgttgctacttcataactgtaattttctaatgta
agatctgttttctgatggtctaggccacccctgtggaaggtcaaatgcca
aaggccgtgactcacaggttgagaccactggttctaggggatggactcag
agctccagtcccgttttgtttataaagcaatacagtttctctcttattca
agccagtagcctgttgcctttgttcccacagtgctggaattgaatacaac
agtaggccaagcctcctctcagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70909046_70910185
seq2: B6Ng01-235E24.b_47_1201 (reverse)

seq1  TATACAAACATTACGGCT-ATCC-TCCGA-GCATG-GA-GTCCCATCTTT  45
      |||||||||||   |||| |||| ||||| ||||| || |||||||||||
seq2  TATACAAACATACGGGCTAATCCTTCCGAGGCATGAGAGGTCCCATCTTT  50

seq1  CACTT-TATTTGACAAAGAAAAGAA--GAAATCAAATCCTTCTGCG-ATA  91
      ||||| |||| ||||||||||||||   ||||| |||||||| ||| |||
seq2  CACTTATATTGGACAAAGAAAAGAAAGAAAATCCAATCCTTC-GCGAATA  99

seq1  C-AGTAGAGTTTGCATAAGTCCTGATCTTAAAAA-GAAATACAC--ACAC  137
      | |||||   |||||||||| ||||||||||||| |||||||||   |||
seq2  CAAGTAGGAGTTGCATAAGT-CTGATCTTAAAAAGGAAATACACCACCAC  148

seq1  AAA-CACAGATAAG-AAAGACACTTAA-GCTCGGTGATTTTCGCTCGAGG  184
      ||| |||||||||| |||||||||||| ||||||||||||||||||||||
seq2  AAACCACAGATAAGAAAAGACACTTAAGGCTCGGTGATTTTCGCTCGAGG  198

seq1  TTCAGATTCTTCTGCGGTTGTCTACCCCCTAAAATTAAATCCCACAGAGC  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCTTCTGCGGTTGTCTACCCCCTAAAATTAAATCCCACAGAGC  248

seq1  AATACATTTCAAAGACATTTTGTGTTTTTAAGATTCAGGCCCCACC-AGG  283
      |||||| |||||||||||||||||||||| |||||||||||||||| |||
seq2  AATACA-TTCAAAGACATTTTGTGTTTTT-AGATTCAGGCCCCACCAAGG  296

seq1  TTTCCCTGTCTCTCCTAGAATATGCTAATATACCAGGCTGTCTTTGAACT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTCTCTCCTAGAATATGCTAATATACCAGGCTGTCTTTGAACT  346

seq1  CACAGTGATCTACCTGCCCCTGGTGTGGGAGACCATTATGGACCTTTGAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGATCTACCTGCCCCTGGTGTGGGAGACCATTATGGACCTTTGAA  396

seq1  AGAAATTTTAATGTTCGTCTTTGGT-AAAATACTTC-AAATCATCATCAT  431
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  AGAAATTTTAATGTTCGTCTTTGGTAAAAATACTTCAAAATCATCATCAT  446

seq1  CATTATCATTATTATTATTTAATGCTTTACTGTTATTTTTCTAGTACCTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCATTATTATTATTTAATGCTTTACTGTTATTTTTCTAGTACCTG  496

seq1  TTGTCTAATATTTCCTTTATATAGTTGTTGGTACATAGTAGGTATTCAAT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATATTTCCTTTATATAGTTGTTGGTACATAGTAGGTATTCAAT  546

seq1  GAGCATTTGTTGGCTGGATTACGGTGCTTATGATCTACTGTATAAAGACT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTGTTGGCTGGATTACGGTGCTTATGATCTACTGTATAAAGACT  596

seq1  GCATTACAGGAATATAAAGTGATCAGTAGTGTTTTCTAACACTATGTAAC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAGGAATATAAAGTGATCAGTAGTGTTTTCTAACACTATGTAAC  646

seq1  ATTCTCATGAATACAAAACGGTGTCTTTAAGTTGGTAGAAGAAATGCTCA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATGAATACAAAACGGTGTCTTTAAGTTGGTAGAAGAAATGCTCA  696

seq1  AAGTCCAGGACTCAATGTGTTCTGTAGGAACACTGCTGTACAAGGCCCTG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGGACTCAATGTGTTCTGTAGGAACACTGCTGTACAAGGCCCTG  746

seq1  GGGGGTCAGAGCTCCCTCATGGTTCAAGGCCTCACAGTTCCTATGGGTAT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCAGAGCTCCCTCATGGTTCAAGGCCTCACAGTTCCTATGGGTAT  796

seq1  CTGAAGCTTTTGTAGGGACCTTCTGTCTGCTCTCTGGATAAAACTGGGAA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTTTGTAGGGACCTTCTGTCTGCTCTCTGGATAAAACTGGGAA  846

seq1  AGCTGAATATGGAAAGCTACACTGTCTTGGGAACTTTCTCGGGCCTAAGA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATATGGAAAGCTACACTGTCTTGGGAACTTTCTCGGGCCTAAGA  896

seq1  CTCACTCACAGATTCCTGTGCTTAGTACGATTATATGCCACAGTCTAGCA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACAGATTCCTGTGCTTAGTACGATTATATGCCACAGTCTAGCA  946

seq1  AAGTTAGGGGTAGCGCACACATCTCACCCTCATGTCACGGCAGCTAAGCC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGGGTAGCGCACACATCTCACCCTCATGTCACGGCAGCTAAGCC  996

seq1  CTGTCTCTGTCACATCCCGCAGACTGGTTTTCTTCTGGCCCAGGGCTATG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTCACATCCCGCAGACTGGTTTTCTTCTGGCCCAGGGCTATG  1046

seq1  TTTATTGTGGGCTTCAGTTTTACAGTTTATGCAGAAGGGCCAAACCCCGT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTGGGCTTCAGTTTTACAGTTTATGCAGAAGGGCCAAACCCCGT  1096

seq1  CTGCTGTGTATGAGAATGCTGGCAACTCCCTACCTAGACTTCAGTAATTT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGTATGAGAATGCTGGCAACTCCCTACCTAGACTTCAGTAATTT  1146

seq1  TGAGAATTC  1140
      |||||||||
seq2  TGAGAATTC  1155


seq1: chr13_70748854_70750023
seq2: B6Ng01-235E24.g_64_1238

seq1  GAATTCCTGGAACTAAATGCAGAAGAAATTAGAAAAACAAAAAAACCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAACTAAATGCAGAAGAAATTAGAAAAACAAAAAAACCCCA  50

seq1  AAACCCCACAAACCTTCCCTGGGCCAACTGGAAGCAAAGGAGATCGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACAAACCTTCCCTGGGCCAACTGGAAGCAAAGGAGATCGACTA  100

seq1  CGGATGTGATCCTCACTGAATCACAGTGTGCCATGCATTCTGTCCCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGTGATCCTCACTGAATCACAGTGTGCCATGCATTCTGTCCCTAGT  150

seq1  CCCCAGCACAGTGTCCTGAGCAGAAATGGAGTCTCAGACTAGATCTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACAGTGTCCTGAGCAGAAATGGAGTCTCAGACTAGATCTAGTG  200

seq1  TAGGTGGAAAATGGGCCATTTCCATGAGTCCCACAGTTTGTTAACAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGAAAATGGGCCATTTCCATGAGTCCCACAGTTTGTTAACAGGAT  250

seq1  TGGGGAAAAGTTCAGATGGAATCATTCTTGTGTGAAAATAAAGATGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAAGTTCAGATGGAATCATTCTTGTGTGAAAATAAAGATGACTT  300

seq1  AAAAGAAGCTATTGTGTAGGACAGGAGGATTACTTGGTCTTCCACATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCTATTGTGTAGGACAGGAGGATTACTTGGTCTTCCACATACA  350

seq1  CCTGCCAAGCATGCCTTAGTTTCCCCTCCAAGTGCTCTGAGGAGAGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAAGCATGCCTTAGTTTCCCCTCCAAGTGCTCTGAGGAGAGCTGC  400

seq1  TACCAAAGGCTGACAGTTATCTGCTGGGGTTTAGAGTCACACTCCTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGGCTGACAGTTATCTGCTGGGGTTTAGAGTCACACTCCTTCAT  450

seq1  ACATTTCCAAGTCCCCACTCTCCGCTACACACTGGAGGCTGAAATACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCAAGTCCCCACTCTCCGCTACACACTGGAGGCTGAAATACCAG  500

seq1  AAGCCTGTAGCAGATGCTGTCACACTCATGCCTCAGGAGCGTCTGTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTAGCAGATGCTGTCACACTCATGCCTCAGGAGCGTCTGTAGTG  550

seq1  TCTCTCACCTGGGATCCGTCTGCCGCCCTCCCCGGAGAGTCTGTGCGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACCTGGGATCCGTCTGCCGCCCTCCCCGGAGAGTCTGTGCGCAG  600

seq1  TGTTCACACAGAGCCACAGCTCCTTCAGGAGAACTTTCACCTTCCCTGT-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTTCACACAGAGCCACAGCTCCTTCAGGAGAACTTTCACCTTCCCTGTA  650

seq1  AAACAGCAACGCACAGCTATCAGGCCCAGTGCTGTGACAGGAGACTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAACGCACAGCTATCAGGCCCAGTGCTGTGACAGGAGACTTCTT  700

seq1  ACCCAAGCAGGGAGCAGCACCCAAACCTTCCCACTGCGACCACTGCGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGCAGGGAGCAGCACCCAAACCTTCCCACTGCGACCACTGCGCTA  750

seq1  TCAACCAAGTCAGGCAAGGCTTCCGCTACAACCCCAAGACTCGACATAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAGTCAGGCAAGGCTTCCGCTACAACCCCAAGACTCGACATAGG  800

seq1  CTTGTTTGCTCTTTTTCTTTCTTCTAGAACAGCGGTTCTCAATC-TTTCC  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGTTTGCTCTTTTTCTTTCTTCTAGAACAGCGGTTCTCAATCTTTTCC  850

seq1  AATGCTGTGACCC-TTCAATATACAGCTCTGCATGTTGGGGTGACCCCCA  897
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTGACCCTTTCAATATACAGCTCTGCATGTTGGGGTGACCCCCA  900

seq1  ATCATAAAATGATTTTTGTTGCTACTTCATAACTGTAATTTTCTAATGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAATGATTTTTGTTGCTACTTCATAACTGTAATTTTCTAATGTA  950

seq1  AGATCTGTTTTCTGATGGTCTTAGGCCACCCCTGTGGAAGGGTCAAATGC  997
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  AGATCTGTTTTCTGATGGTC-TAGGCCACCCCTGTGGAA-GGTCAAATGC  998

seq1  CAAAGGGCCGTGACCCACAGGTTGAGAACCACT-GTTCTAGGGGATGGAC  1046
      |||| ||||||||| ||||||||||| |||||| ||||||||||||||||
seq2  CAAA-GGCCGTGACTCACAGGTTGAG-ACCACTGGTTCTAGGGGATGGAC  1046

seq1  TCAGAAGCCCCAG-CCCG-TTTGTTATTAAAGGCATTACAGTTTCTCTC-  1093
      |||| ||| |||| |||| ||||||  |||| ||| ||||||||||||| 
seq2  TCAG-AGCTCCAGTCCCGTTTTGTTTATAAA-GCAATACAGTTTCTCTCT  1094

seq1  TATCACAGCAAGTTAGCCTG-TGCCTTTGTT-CCACAGTGCT-GAGATGG  1140
      |||   ||| || ||||||| |||||||||| |||||||||| ||  || 
seq2  TATTCAAGCCAG-TAGCCTGTTGCCTTTGTTCCCACAGTGCTGGAATTGA  1143

seq1  ATACAACAGTA-GCAAAGCCTCC-CTCAGTTA  1170
      ||||||||||| || |||||||| ||||||||
seq2  ATACAACAGTAGGCCAAGCCTCCTCTCAGTTA  1175


| Home | SequenceCutter | Blast | Download |