BAC Information

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BAC

Clone NameB6Ng01-235I13
Chromosome13 (Build37)
Map Location 117,104,575 - 117,208,911
singlet/doubletdoublet
Overlap geneEG668276, Gm280
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1
Downstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235I13.bB6Ng01-235I13.g
ACCGA046988GA046989
length1561,127
definitionB6Ng01-235I13.b B6Ng01-235I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,104,575 - 117,104,730)(117,207,796 - 117,208,911)
sequence
atcaaatccagctgatggtcctttcacaaagcccggaccatttttcctct
tctgcagtctgtctaagcctcagctctgaatttagagtctctgagttgtt
ttaccttagcctcgggaggtttacagcgagaaggagcgggggagggggtt
ggggtg

gaattctacatgtcccaaatccccattgtgtactttagttttgtcttgta
ttcagaggttcttttagaaagaatcttaaagatgaaatctgcctttcaac
ttttgaaaaatacatataaagatagatgttacgtagttcacagaatagac
agatatacagagatgcagcaatatctccttggtgcctcttgtgtattcat
gttatttcctcaactaaaaagacatagccacaaagacatacaatgagcac
tccacttagaaaactatggccatatcttttctgaacaattcattatcata
taaataaaacctgaaggggactgtgtgctgatgcatgacacagtcatcat
attatgaatatgaagtctttgaaggcatcttttgcaatgttttaaataaa
aatgtgattctttaagttttctcagtgtcagtgtattgagaactgcaggc
tagttcaataggcttctacctgtatacatattctgtgtgaagattatcac
taaatcaacagcacggcatccacaaaggtttccacattactgtgatatca
ttagcagatgttattttgagaggaaagcagtaaggaccattgctgtatct
cataaaaggataccatcctattggtgtagcagaagacataaaaacacagc
agtggtttattttttccaacagaatatgaattttaagttgtctctggcaa
cgtctaagcatctctcatttcaacacagagtgctcctattgaaaagcgac
tcataacaattgagtcaaagtaaaaaccatgggattctgcagatggcgga
ataattcagtgggataatctgcataaagcagattcatgttttctatgaaa
acatttttaattttaatgttttggctttcatcaacaaggattactgaaca
tccataatttttttccatctagttcccaccttcttcttaattaaaaattg
tactgtgattagatttaaatccttttccctagtggtgatgtgattacact
tgtgctgtgttccgtggtgcagattctcgttgtatgatttcattcagaat
atacaactccatgtcatcagcttcccaccctgagaagctccatggggagg
ttcatgccactgagatgtacagtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117104575_117104730
seq2: B6Ng01-235I13.b_51_206

seq1  ATCAAATCCAGCTGATGGTCCTTTCACAAAGCCCGGACCATTTTTCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCCAGCTGATGGTCCTTTCACAAAGCCCGGACCATTTTTCCTCT  50

seq1  TCTGCAGTCTGTCTAAGCCTCAGCTCTGAATTTAGAGTCTCTGAGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTCTGTCTAAGCCTCAGCTCTGAATTTAGAGTCTCTGAGTTGTT  100

seq1  TTACCTTAGCCTCGGGAGGTTTACAGCGAGAAGGAGCGGGGGAGGGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGCCTCGGGAGGTTTACAGCGAGAAGGAGCGGGGGAGGGGGTT  150

seq1  GGGGTG  156
      ||||||
seq2  GGGGTG  156


seq1: chr13_117207796_117208911
seq2: B6Ng01-235I13.g_72_1198 (reverse)

seq1  CCACACTGTACATCCTCACT-GCATGAACCT-CCCATGGAGCTTCTCAGT  48
      ||||||||||||| |||| | |||||||||| ||||||||||||||||| 
seq2  CCACACTGTACAT-CTCAGTGGCATGAACCTCCCCATGGAGCTTCTCAGG  49

seq1  GT-GGAAGCTGATGACATGGAGTTGTATA-TCTGAATGAAATCATAACAA  96
      || |||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  GTGGGAAGCTGATGACATGGAGTTGTATATTCTGAATGAAATCAT-ACAA  98

seq1  CGGAGAATCTGCACCACGGAACACAGCAC-AGTGTAATCACATCACCACT  145
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  C-GAGAATCTGCACCACGGAACACAGCACAAGTGTAATCACATCACCACT  147

seq1  AGGGAAAA-GATTAAACCCTAATCACAGTACAATTTTTAATTAAGAAGAA  194
      |||||||| |||| ||  ||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGGATTTAAATCTAATCACAGTACAATTTTTAATTAAGAAGAA  197

seq1  GGTGGGAACTAGATGG-AAAAAATTATGGATGTTCAGTAAT-CTTG-TGA  241
      |||||||||||||||| |||||||||||||||||||||||| |||| |||
seq2  GGTGGGAACTAGATGGAAAAAAATTATGGATGTTCAGTAATCCTTGTTGA  247

seq1  TGAAAGCC-AAACATTAAA--TTAAAATGTTTTCATAGAAAACATGAATC  288
      |||||||| ||||||||||  | |||||||||||||||||||||||||||
seq2  TGAAAGCCAAAACATTAAAATTAAAAATGTTTTCATAGAAAACATGAATC  297

seq1  TGC-TTATGCAGATTATCCCACTGAATTATTCCGCCATCTGCAGAAT-CC  336
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCTTTATGCAGATTATCCCACTGAATTATTCCGCCATCTGCAGAATCCC  347

seq1  ATGGTTTTTACTTTGACTCAATTGTTATGAGTCGCTTTTCAATAGGAGCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTACTTTGACTCAATTGTTATGAGTCGCTTTTCAATAGGAGCA  397

seq1  CTCTGTGTTGAAATGAGAGATGCTTAGACGTTGCCAGAGACAACTTAAAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTTGAAATGAGAGATGCTTAGACGTTGCCAGAGACAACTTAAAA  447

seq1  TTCATATTCTGTTGGAAAAAATAAACCACTGCTGTGTTTTTATGTCTTCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCTGTTGGAAAAAATAAACCACTGCTGTGTTTTTATGTCTTCT  497

seq1  GCTACACCAATAGGATGGTATCCTTTTATGAGATACAGCAATGGTCCTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACCAATAGGATGGTATCCTTTTATGAGATACAGCAATGGTCCTTA  547

seq1  CTGCTTTCCTCTCAAAATAACATCTGCTAATGATATCACAGTAATGTGGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCCTCTCAAAATAACATCTGCTAATGATATCACAGTAATGTGGA  597

seq1  AACCTTTGTGGATGCCGTGCTGTTGATTTAGTGATAATCTTCACACAGAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGTGGATGCCGTGCTGTTGATTTAGTGATAATCTTCACACAGAA  647

seq1  TATGTATACAGGTAGAAGCCTATTGAACTAGCCTGCAGTTCTCAATACAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACAGGTAGAAGCCTATTGAACTAGCCTGCAGTTCTCAATACAC  697

seq1  TGACACTGAGAAAACTTAAAGAATCACATTTTTATTTAAAACATTGCAAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGAGAAAACTTAAAGAATCACATTTTTATTTAAAACATTGCAAA  747

seq1  AGATGCCTTCAAAGACTTCATATTCATAATATGATGACTGTGTCATGCAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTTCAAAGACTTCATATTCATAATATGATGACTGTGTCATGCAT  797

seq1  CAGCACACAGTCCCCTTCAGGTTTTATTTATATGATAATGAATTGTTCAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACAGTCCCCTTCAGGTTTTATTTATATGATAATGAATTGTTCAG  847

seq1  AAAAGATATGGCCATAGTTTTCTAAGTGGAGTGCTCATTGTATGTCTTTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATGGCCATAGTTTTCTAAGTGGAGTGCTCATTGTATGTCTTTG  897

seq1  TGGCTATGTCTTTTTAGTTGAGGAAATAACATGAATACACAAGAGGCACC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGTCTTTTTAGTTGAGGAAATAACATGAATACACAAGAGGCACC  947

seq1  AAGGAGATATTGCTGCATCTCTGTATATCTGTCTATTCTGTGAACTACGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATATTGCTGCATCTCTGTATATCTGTCTATTCTGTGAACTACGT  997

seq1  AACATCTATCTTTATATGTATTTTTCAAAAGTTGAAAGGCAGATTTCATC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTATCTTTATATGTATTTTTCAAAAGTTGAAAGGCAGATTTCATC  1047

seq1  TTTAAGATTCTTTCTAAAAGAACCTCTGAATACAAGACAAAACTAAAGTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTCTTTCTAAAAGAACCTCTGAATACAAGACAAAACTAAAGTA  1097

seq1  CACAATGGGGATTTGGGACATGTAGAATTC  1116
      ||||||||||||||||||||||||||||||
seq2  CACAATGGGGATTTGGGACATGTAGAATTC  1127


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