BAC Information

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BAC

Clone NameB6Ng01-235I22
Chromosome13 (Build37)
Map Location 12,903,001 - 12,903,925
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream geneLOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235I22.bB6Ng01-235I22.g
ACCGA047004GA047005
length1,2181,148
definitionB6Ng01-235I22.b B6Ng01-235I22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtactgggatttttttctttctttttctttcttcttctttttt
tttttctttttgagggggagactttttatactgcttccattttttaatag
ttatatctttatttaaattgtttctctggtcttgatttaactttggtaag
tagtatctattgagaaaataaaccatttcttttagattttctagttttgt
agagtacaggtttttgaactatgacaaaatgattctttggatttacccag
tgtctattgttatgcctcacttttcctttctgattttgccaattttggta
ctttttctctgccttttaattagttttcataataatctgtcagtcttgtg
gattttattttttaaaaatattttattgtatttatctattttacactcca
cattttattccctcttagttcacccacgccccaccccacccctgtctcca
tgagaatgtccccatctccataccaccagacctctaaactccctgaggcc
tacagtctcttgaggattaggtacatcttctctgactgaacaaagaccca
gcagccctctaatgtatatgagttgggggcctcatatcacctggttggtg
gtccagtgtctgagagatctcagagatccagattaattgagactgctggt
cctcctacaaggtcaccctcttctcctcagctctttccagcttttctcta
attcaaccacagttgtctgcagcttctgtccattggttgggtacaaatat
ctacatcagactcttttagctgcttgttgattttcttaaagaaccaatta
tttatttcgttgagtttttgtattgttctctttgtttctgttcttttttt
taattcccaccctcagtttgattattttctgccatctcttgggatgtgtt
cacttctttttttagggtttttagcttcataattaagttgctagtatgag
atcacccccagtttcttcatgaatacatttagtgctatgactttctctag
tactgctttcattgtgtcccaataactttgagtatatggtgcaattcatt
ttcaatgaactataagaggtctttatttctttaattccaacttggacctg
aagtcattttgtagggagtggggttcactcgtggaattgtgagcctttcc
ggtgtgttcatccgttgacttcagtttatcattagaggagcctgcgagag
gagagtgagagggcgact
gaattctatatattgaatcatccctgcatacctgggatgaagcctacttg
atattggtgaatggttgttttgatgtgttcttgtatttggtttgtaagaa
ttttattattgattattattttattatcaattgatctgaagttctcttcc
tctgttgggtctttgtgtggtttatgtatgagcataatttgggtgccata
gaatgaattgggtagttttccttcagtttctattttgtggaacaattaag
agtatttgtattaggtcttctttaaaggtctggtagaattctgcactaca
accatcttgtcttggacttttttgttgtcgttgttgggagtctcttaatg
tctgcttctattctttacgggttgtggaatgttttatatggtttatctga
tcttgatttaactttggtacctggtatctgtctagtaaattgtctatttc
atccagattttccagttttgttgagtatgggcttttgtagtagaatcaga
taattatttaaattttcttcatttccattgttatgtctcccttctcattt
ctgctattattaatttagatactgtttcggtgctctctggttagtctggc
tttgggtttatctatcttgttgatttttctcaaagaaccactcctggttt
tgttgattctttgtaaagatctttttgtttctacttggttgatttcagcc
ctgagtttgattatttcctgctgtctattcctcttgggtgtataatgcat
tcattagacataaaaaattggaaggtcaataattccaatacaacaatgtt
ggaacatcatttattccccagttattatggcaatagatctagcgtcacaa
atctggcaggtgagcagttattaagcaccatatatctcacactctgtatc
tgtactagaaggtggaaaaagcctcagtatctagtcattttatgcatagg
atgcacactgagattcactactactctctatacatatttatgactctata
taaatataaatggaaacatgcatgaagaggtactaatttggataaatatt
tactccctttagtattttgttctgcaaagtcatagttttctcttaccaat
tgctctctaaacatgggaatagaaactgacaatgtttgacctaggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12903001_12903925
seq2: B6Ng01-235I22.g_314_1214

seq1  AAGAGTATTTGTATTAGGTCTTCTTTAAAGGTCTGGTAGAATTCTGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTTGTATTAGGTCTTCTTTAAAGGTCTGGTAGAATTCTGCACT  50

seq1  ACAACCATCTTGTCTTGGACTTTTTTGTTGTCGTTGTTGGGAGTCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTTGTCTTGGACTTTTTTGTTGTCGTTGTTGGGAGTCTCTTA  100

seq1  ATGTCTGCTTCTATTCTTTACGGGTTGTGGAATGTTTTATATGGTTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTTCTATTCTTTACGGGTTGTGGAATGTTTTATATGGTTTATC  150

seq1  TGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAGTAAATTGTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAGTAAATTGTCTAT  200

seq1  TTCATCCAGATTTTCCAGTTTTGTTGAGTATGGGCTTTTGTAGTAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAGATTTTCCAGTTTTGTTGAGTATGGGCTTTTGTAGTAGAATC  250

seq1  AGATAATTATTTAAATTTTCTTCATTTCCATTGTTATGTCTCCCTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTATTTAAATTTTCTTCATTTCCATTGTTATGTCTCCCTTCTCA  300

seq1  TTTCTGCTATTATTAATTTAGATACTGTTTCGGTGCTCTCTGGTTAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTATTATTAATTTAGATACTGTTTCGGTGCTCTCTGGTTAGTCT  350

seq1  GGCTTTGGGTTTATCTATCTTGTTGATTTTTCTCAAAGAACCACTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGGTTTATCTATCTTGTTGATTTTTCTCAAAGAACCACTCCTGG  400

seq1  TTTTGTTGATTCTTTGTAAAGATCTTTTTGTTTCTACTTGGTTGATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGATTCTTTGTAAAGATCTTTTTGTTTCTACTTGGTTGATTTCA  450

seq1  GCCCTGAGTTTGATTATTTCCTGCTGTCTATTCCTCTTGGGTGTATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGTTTGATTATTTCCTGCTGTCTATTCCTCTTGGGTGTATAATG  500

seq1  CATTCATTAGACATAAAAAATTGGAAGGTCAATAATTCCAATACAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTAGACATAAAAAATTGGAAGGTCAATAATTCCAATACAACAAT  550

seq1  GTTGGAACATCATTTATTCCCCAGTTATTATGGCAATAGATCTAGCGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACATCATTTATTCCCCAGTTATTATGGCAATAGATCTAGCGTCA  600

seq1  CAAATCTGGCAGGTGAGCAGTTATTAAGCACCATATATCTCACACTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGGCAGGTGAGCAGTTATTAAGCACCATATATCTCACACTCTGT  650

seq1  ATCTGTACTAGAAGGTGGAAAAAGCCTCAGTATCTAGTCATTTTATGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACTAGAAGGTGGAAAAAGCCTCAGTATCTAGTCATTTTATGCAT  700

seq1  AGGAATGCACCACTGAGATTCACTACTACTCTCTATAACATATTTATGAC  750
      ||| ||||| |||||||||||||||||||||||||| |||||||||||||
seq2  AGG-ATGCA-CACTGAGATTCACTACTACTCTCTAT-ACATATTTATGAC  747

seq1  TCTATATAAATTATAAAATGGAAACATGCATTGAAGAGGGAATTAAATTT  800
      |||||||||| ||| ||||||||||||||| |||||| || | ||| || 
seq2  TCTATATAAA-TAT-AAATGGAAACATGCA-TGAAGA-GGTACTAATTTG  793

seq1  GATAATATTTTCCTCCCTTTAGTATTTTTGTCTGGGAAAAAGTCAATGTT  850
      |||||   ||| ||||||||||||||||  ||||    |||||||  |||
seq2  GATAAATATTTACTCCCTTTAGTATTTTGTTCTG---CAAAGTCATAGTT  840

seq1  TTCTCTTAACAAATTGCTTCTTAAACCATTGGGGAATATAGAAAATTGGA  900
      ||||||| || |||||| |||  || |||  ||||  ||||||| |    
seq2  TTCTCTT-ACCAATTGC-TCTCTAAACAT--GGGA--ATAGAAACT----  880

seq1  GTAAAAAGTGTTTGAACCTAGGTGC  925
          | | |||||| ||||||||||
seq2  ---GACAATGTTTG-ACCTAGGTGC  901