BAC Information

Click to search

BAC

Clone NameB6Ng01-235M13
Chromosome13 (Build37)7 (Build37)
Map Location 54,417,541 - 54,417,656111,772,211 - 111,773,335
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSptlc1, LOC100040421, Msx2, EG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535
Downstream geneCplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235M13.bB6Ng01-235M13.g
ACCGA047171GA047172
length9671,142
definitionB6Ng01-235M13.b B6Ng01-235M13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,417,541 - 54,417,656)(111,772,211 - 111,773,335)
sequence
gaattctcaactgagaaaacttgtatgacagagaagcacctaaataaatg
ttcagtatccttagtcatcaaggaaatgcaaatcaaaacaactctgagat
tccacctcacatctatcaaaaatagccaagatcaaaaattcaggtgagct
gggcggtggtggcacacacctttaaacccagcacttgggaggtagagaca
ggaggatttctgagttcgaggccagcctggtctacagagtgcgttccagg
acagccagagctctacagagagaaaccctgtctggaaaaacaaaacaaaa
caaaacaaaacaaaacaaaacaaaacaaaacaacaaaaaaaagaacaaac
caaaaaaaccaaaaaaacaaaaccagaaaaaaaaaaaacccaaacaagca
aacaaacaaaaacctcaggtgacagcagatgctggtgaggatgtggagaa
agaggaacactcctccattgctggtgggattgtaaactggtatacccact
ctggaaatcagtttggtggttcctcagaaaattagacatggtactacccg
aggacccagctatacctcttctgggcatatacccagaagatgctctaaca
tgtaataagaacacatgttccactatgttcatagcactatgttcatagcc
agaagctggaaagaacccagatgtccttcaacagaggaatggatacagaa
aatgtggtacatttacacaatggaatactactcagctactaaaaacaatg
aatttatgaaattcttaggcaaatgaatggaactagaaaatatcatcttg
agtgaggtaaccaaatcacaaaagaaatgcacatggtatgcactcactga
taagtggatattagcccggaagcttcgaatacccaaaatacagaccacat
gaaactcaagaagaaggaagaacaaaatgtgggatactctggttctttct
tagaagggggaacaaaa
gaattctcatctgagtgtgggatggaaatcatggaatcacagacttgtag
aatttatgggaaatattaccacctcaataacctaaagataataggtcccc
attagaggcatgaagaagaatggccagtagggaaagctgaattcctatgg
tgttaaatccctaaagtgtaaaaggagattaattcagcaatgtgttttct
attaatgtaacttgaaaccttatataaataggaataacatttttcttcag
ggaactgaaataatcctacagtaggtaggaacttcttaatcattcttttt
ttccaatttttattagatattttcttcatttacattaaacataaagattt
aacggactataaaatatgtgattagaaagcttctttaaatagtttttttt
ccattttttattaggtatttagctcaataaataaaaataaataaataata
ataaataataaataaataataataaataaatgataaataaatagttttta
aaagaaagaatttattcaaaaacaaagtttctaatgtgtttgcaaaatgt
gacatgcataaagtgatcactaaatacatgaattccattctcctaaaaat
tgttttctagtgagggcaagggaacataacattaaatgtaaaagaaataa
aatacagaaatgtcaacttgtataaatgtcttaatgtaaaattactcaat
gaaacacaaaatagacacatagacaagaacaatagaagaaaaatccaaaa
ctaagctccacatagctacagccacttgtgtcatgaatatatattggaca
aaatacagcctcttcaataatggttctgagaaaattaaagatctacttgc
agaggaattacacaaatccatactttcttaccttatttaaaaaattcaaa
atggattaaaggacttggttgaaagacctaagcctctgaaatttctagaa
gaaaaacggacaaaacacttcaaggtataaaacataggccagaaactttc
ttccaataatattccagctgctcaggaatgagggccaacaattaaaaact
ggagacctaatattacactgcaaggacggtaggtagaactgggttacctg
ggtgaacagtagtctttaacctaccaaatgtcacactcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54417541_54417656
seq2: B6Ng01-235M13.b_201_316

seq1  GTGGTGGCCCACGCCTTTAACCCCAGCACTTGGGAGGCAGAGGCAGGCGG  50
      |||||||| ||| ||||||| |||||||||||||||| |||| |||| ||
seq2  GTGGTGGCACACACCTTTAAACCCAGCACTTGGGAGGTAGAGACAGGAGG  50

seq1  ATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  100
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGCGTTCCAGGACAGC  100

seq1  CAGGGCTACACAGAGA  116
      ||| |||  |||||||
seq2  CAGAGCTCTACAGAGA  116

seq1: chr7_111772211_111773335
seq2: B6Ng01-235M13.g_67_1208 (reverse)

seq1  CCAGAAGTG-GACATTT-GTAG--TAAA-ACTACTG-TCACC--AGTAA-  41
      |||| |||| ||||||| ||||  |||| ||||||| |||||   |||| 
seq2  CCAGGAGTGTGACATTTGGTAGGTTAAAGACTACTGTTCACCCAGGTAAC  50

seq1  CCATTTCTACCTA-CGTCCTTGCAGTGTAATA-TAGGTCT-CAGTTTTTA  88
      ||| ||||||||| |||||||||||||||||| ||||||| |||||||||
seq2  CCAGTTCTACCTACCGTCCTTGCAGTGTAATATTAGGTCTCCAGTTTTTA  100

seq1  ATTGTTGG-CCTCATTTCCTGAGCAGCTGGAATATTAT--GGAGAAAG-T  134
      |||||||| ||||| |||||||||||||||||||||||  | |||||| |
seq2  ATTGTTGGCCCTCA-TTCCTGAGCAGCTGGAATATTATTGGAAGAAAGTT  149

seq1  TCTTGCCTATG-TTTATACCTTGAAGTGTTTTTGTCCG-TTTTCTTCTAG  182
      ||| ||||||| |||||||||||||||| ||||||||| |||||||||||
seq2  TCTGGCCTATGTTTTATACCTTGAAGTG-TTTTGTCCGTTTTTCTTCTAG  198

seq1  AAATTTCAGAGGCTTAGGTCTTTCAACCAAGT-CTTTAATCCATTTTGAA  231
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAATTTCAGAGGCTTAGGTCTTTCAACCAAGTCCTTTAATCCATTTTGAA  248

seq1  TTTTTTAAATAAGGTAAG-AAGTATGGATTTGTGTAATTCCTCTGCAAGT  280
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTTAAATAAGGTAAGAAAGTATGGATTTGTGTAATTCCTCTGCAAGT  298

seq1  AGATCTTTAATTTTCTCAGAACCATTTATTGAAGAGGCTGTATTTTGTCC  330
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGATCTTTAATTTTCTCAGAACCA-TTATTGAAGAGGCTGTATTTTGTCC  347

seq1  AATATATATTCATGACACAAGTGGCTGTAGCTATGTGGAGCTTAGTTTTG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTCATGACACAAGTGGCTGTAGCTATGTGGAGCTTAGTTTTG  397

seq1  GATTTTTCTTCTATTGTTCTTGTCTATGTGTCTATTTTGTGTTTCATTGA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTTCTATTGTTCTTGTCTATGTGTCTATTTTGTGTTTCATTGA  447

seq1  GTAATTTTACATTAAGACATTTATACAAGTTGACATTTCTGTATTTTATT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTACATTAAGACATTTATACAAGTTGACATTTCTGTATTTTATT  497

seq1  TCTTTTACATTTAATGTTATGTTCCCTTGCCCTCACTAGAAAACAATTTT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACATTTAATGTTATGTTCCCTTGCCCTCACTAGAAAACAATTTT  547

seq1  TAGGAGAATGGAATTCATGTATTTAGTGATCACTTTATGCATGTCACATT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAATGGAATTCATGTATTTAGTGATCACTTTATGCATGTCACATT  597

seq1  TTGCAAACACATTAGAAACTTTGTTTTTGAATAAATTCTTTCTTTTAAAA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACACATTAGAAACTTTGTTTTTGAATAAATTCTTTCTTTTAAAA  647

seq1  ACTATTTATTTATCATTTATTTATTATTATTTATTTATTATTTATTATTA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTATTTATCATTTATTTATTATTATTTATTTATTATTTATTATTA  697

seq1  TTTATTTATTTTTATTTATTGAGCTAAATACCTAATAAAAAATGGAAAAA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTTATTTATTGAGCTAAATACCTAATAAAAAATGGAAAAA  747

seq1  AAACTATTTAAAGAAGCTTTCTAATCACATATTTTATAGTCCGTTAAATC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTAAAGAAGCTTTCTAATCACATATTTTATAGTCCGTTAAATC  797

seq1  TTTATGTTTAATGTAAATGAAGAAAATATCTAATAAAAATTGGAAAAAAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTAATGTAAATGAAGAAAATATCTAATAAAAATTGGAAAAAAA  847

seq1  GAATGATTAAGAAGTTCCTACCTACTGTAGGATTATTTCAGTTCCCTGAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATTAAGAAGTTCCTACCTACTGTAGGATTATTTCAGTTCCCTGAA  897

seq1  GAAAAATGTTATTCCTATTTATATAAGGTTTCAAGTTACATTAATAGAAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTTATTCCTATTTATATAAGGTTTCAAGTTACATTAATAGAAA  947

seq1  ACACATTGCTGAATTAATCTCCTTTTACACTTTAGGGATTTAACACCATA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGCTGAATTAATCTCCTTTTACACTTTAGGGATTTAACACCATA  997

seq1  GGAATTCAGCTTTCCCTACTGGCCATTCTTCTTCATGCCTCTAATGGGGA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGCTTTCCCTACTGGCCATTCTTCTTCATGCCTCTAATGGGGA  1047

seq1  CCTATTATCTTTAGGTTATTGAGGTGGTAATATTTCCCATAAATTCTACA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTATCTTTAGGTTATTGAGGTGGTAATATTTCCCATAAATTCTACA  1097

seq1  AGTCTGTGATTCCATGATTTCCATCCCACACTCAGATGAGAATTC  1125
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGATTCCATGATTTCCATCCCACACTCAGATGAGAATTC  1142