BAC Information

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BAC

Clone NameB6Ng01-236C03
Chromosome13 (Build37)
Map Location 10,008,335 - 10,148,103
singlet/doubletdoublet
Overlap geneChrm3
Upstream geneLOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236C03.bB6Ng01-236C03.g
ACCGA047426GA047427
length1,1361,102
definitionB6Ng01-236C03.b B6Ng01-236C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,146,980 - 10,148,103)(10,008,335 - 10,009,430)
sequence
gaattcttactgttcatattctccattagaatatttgagataacccaagg
ctgatgttttctttataagttcaatttactacaagtatgagaaccacttg
agtgattttatttttcatttagtctttttttcaaacctaaaagtgtcaca
cagatcaattaatttttgaggttattcaaggtcaccctagtatcagcatc
caagggtgctcctggaactttaggggcattcctggtcctttcaagatttc
aaataggaaaacaagcaaattattggaaaccaactacatttataatattt
ctgaaacacttcttcctagtcaccttctccctctcaacctgtacaataag
tagatttttctcagagccatattggaaggacagaccccatggtcaagtag
ggaaacccacctgtctcctatgaagccaacaccaaggaatttacaaagac
aggaatcatgtcacttctgcttgctcagaagatattgttggtcatttttt
aaaaggtcattatattcatgtttaattttgttaattatattgtgagttta
ttactttcagtttgggatattaatagtttctcaaacattagattttaaat
agaaatgggtttaatctaccaaaaataaaatgaaggggagcccgagtgtt
taggtcagtggtaaagtacttgtctggcatgcaagaagccctggatgcaa
tccccaacactgtaaagcaaacaagcaagaatgaatgaataaatgaacaa
atgtaaaatgaatgaatgaatggatgaataaataaataaatataaatgta
aaatgtaaaatataaaaaccaccacacaggtagccaagacctaaagccca
ggctgtagcacactgtgtccctcctcagtaagtccctgaattctcctcac
ccatgcaattttgtttcttctcactgctagcatttcagttgtgtgaaaat
gtgtcaatttctaaactcaaacaacagagtgaatttccctatgagaagaa
taattaaaacacattcatctactatagtcaaatacagcaagctacctgtg
ttcttttcctggggaacacattaccttgttccactggtgggtgctgcctt
ttctttccattataaagatgatatggtgaatgctgg

gaattcacttcttgtgtccagacctgagacacacaagtgctaagtaacat
gtttgttactttgggataactttcacaatacttttgtgagcaatggggta
ctttataattgtattgatgggacaaaatactagagaagccaagtaattat
ccaagattctaacagcaaataaaacagcagagttccagtacaaccaattt
cattattccttttctagtctttctagatttgatcatcccaatttgatcat
tttcagggtggttaagtaatacaggcataaaccaaatttctgttgatcag
actctttttctatctttcattctaatgagacctctgtgaattactgaaca
atgtagaggttcttttaatggaggcagggagataaggatccacattggct
tgccccacgccttggaatttaggcctatttcaaccaaggatctacatttc
atttttcctgactcatgatgaaaattaagtgaatgtgtgtgaggtactag
cagaatgtaagacttgtagtgcgcccttggctttctcaattaaaatggag
tgaagacacagccctattctttttgaggcaggtttttaatcacacaaccc
cagctggcttgaaagccattatgtagaccaagctgtcctcaaacttacag
tgatccttctgtctgtatggagtgctgagatttgaggctgtcttaccaca
tctggcaagagagaacccttttctctctgctttcgtctgcctggaatgtg
actgtgattgctggtagcacagccaggagggaacaggttgggcccagatg
ccaaggaatttcttgggaaatgggagctggtgctactgacaccagtgtct
ggcagttaattcaagatcaccaactaacttctagactcctttcaattgga
gagaggcagacactttactttgcccttgtgactagcagaagacactttaa
taagattgcagctgggaaagtcaacagaatagactggtgcaagagaatgc
tttgatcacttgaatgatgctcagagtatctgtgtctgactggcagtgaa
tctggacccctcttgaaagcaataaccaggttttctttcatccggattcc
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10146980_10148103
seq2: B6Ng01-236C03.b_41_1176 (reverse)

seq1  CCAGCA-TCACC--ATCATCCTTAT-ATGG-AAGAAA--GCAGCACCCA-  42
      |||||| |||||  |||||| |||| |||| ||||||  |||||||||| 
seq2  CCAGCATTCACCATATCATCTTTATAATGGAAAGAAAAGGCAGCACCCAC  50

seq1  CAGT-GAACAA-GTAATGTG-TCCCCAGG-AAAGAACACAGGTAGCTTGC  88
      |||| |||||| |||||||| |||||||| ||||||||||||||||||||
seq2  CAGTGGAACAAGGTAATGTGTTCCCCAGGAAAAGAACACAGGTAGCTTGC  100

seq1  TGTATTTGACTATAGTAGATGAATGTGTTTTAATTATTCTTCTCATAGGG  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGACTATAGTAGATGAATGTGTTTTAATTATTCTTCTCATAGGG  150

seq1  AAATTCACTCTGTTGTTTGAGTTTAGAAATTGACACATTTTCACACAACT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTCTGTTGTTTGAGTTTAGAAATTGACACATTTTCACACAACT  200

seq1  GAAATGCTAGCAGTGAGAAGAAACAAAATTGCATGGGTGAGGAGAATTCA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTAGCAGTGAGAAGAAACAAAATTGCATGGGTGAGGAGAATTCA  250

seq1  GGGACTTACTGAGGAGGGACACAGTGTGCTACAGCCTGGGCTTTAGGTCT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTACTGAGGAGGGACACAGTGTGCTACAGCCTGGGCTTTAGGTCT  300

seq1  TGGCTACCTGTGTGGTGGTTTTTATATTTTACATTTTACATTTATATTTA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACCTGTGTGGTGGTTTTTATATTTTACATTTTACATTTATATTTA  350

seq1  TTTATTTATTCATCCATTCATTCATTCATTTTACATTTGTTCATTTATTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCATCCATTCATTCATTCATTTTACATTTGTTCATTTATTC  400

seq1  ATTCATTCTTGCTTGTTTGCTTTACAGTGTTGGGGATTGCATCCAGGGCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTTGCTTGTTTGCTTTACAGTGTTGGGGATTGCATCCAGGGCT  450

seq1  TCTTGCATGCCAGACAAGTACTTTACCACTGACCTAAACACTCGGGCTCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATGCCAGACAAGTACTTTACCACTGACCTAAACACTCGGGCTCC  500

seq1  CCTTCATTTTATTTTTGGTAGATTAAACCCATTTCTATTTAAAATCTAAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTTTATTTTTGGTAGATTAAACCCATTTCTATTTAAAATCTAAT  550

seq1  GTTTGAGAAACTATTAATATCCCAAACTGAAAGTAATAAACTCACAATAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAAACTATTAATATCCCAAACTGAAAGTAATAAACTCACAATAT  600

seq1  AATTAACAAAATTAAACATGAATATAATGACCTTTTAAAAAATGACCAAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAAATTAAACATGAATATAATGACCTTTTAAAAAATGACCAAC  650

seq1  AATATCTTCTGAGCAAGCAGAAGTGACATGATTCCTGTCTTTGTAAATTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCTGAGCAAGCAGAAGTGACATGATTCCTGTCTTTGTAAATTC  700

seq1  CTTGGTGTTGGCTTCATAGGAGACAGGTGGGTTTCCCTACTTGACCATGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGTTGGCTTCATAGGAGACAGGTGGGTTTCCCTACTTGACCATGG  750

seq1  GGTCTGTCCTTCCAATATGGCTCTGAGAAAAATCTACTTATTGTACAGGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCCTTCCAATATGGCTCTGAGAAAAATCTACTTATTGTACAGGT  800

seq1  TGAGAGGGAGAAGGTGACTAGGAAGAAGTGTTTCAGAAATATTATAAATG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGAGAAGGTGACTAGGAAGAAGTGTTTCAGAAATATTATAAATG  850

seq1  TAGTTGGTTTCCAATAATTTGCTTGTTTTCCTATTTGAAATCTTGAAAGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTTTCCAATAATTTGCTTGTTTTCCTATTTGAAATCTTGAAAGG  900

seq1  ACCAGGAATGCCCCTAAAGTTCCAGGAGCACCCTTGGATGCTGATACTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAATGCCCCTAAAGTTCCAGGAGCACCCTTGGATGCTGATACTAG  950

seq1  GGTGACCTTGAATAACCTCAAAAATTAATTGATCTGTGTGACACTTTTAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTTGAATAACCTCAAAAATTAATTGATCTGTGTGACACTTTTAG  1000

seq1  GTTTGAAAAAAAGACTAAATGAAAAATAAAATCACTCAAGTGGTTCTCAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAAAAAGACTAAATGAAAAATAAAATCACTCAAGTGGTTCTCAT  1050

seq1  ACTTGTAGTAAATTGAACTTATAAAGAAAACATCAGCCTTGGGTTATCTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAGTAAATTGAACTTATAAAGAAAACATCAGCCTTGGGTTATCTC  1100

seq1  AAATATTCTAATGGAGAATATGAACAGTAAGAATTC  1124
      ||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTAATGGAGAATATGAACAGTAAGAATTC  1136


seq1: chr13_10008335_10009430
seq2: B6Ng01-236C03.g_68_1169

seq1  GAATTCACTTCTTGTGTCCAGACCTGAGACACACAAGTGCTAAGTAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTTGTGTCCAGACCTGAGACACACAAGTGCTAAGTAACAT  50

seq1  GTTTGTTACTTTGGGATAACTTTCACAATACTTTTGTGAGCAATGGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTACTTTGGGATAACTTTCACAATACTTTTGTGAGCAATGGGGTA  100

seq1  CTTTATAATTGTATTGATGGGACAAAATACTAGAGAAGCCAAGTAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAATTGTATTGATGGGACAAAATACTAGAGAAGCCAAGTAATTAT  150

seq1  CCAAGATTCTAACAGCAAATAAAACAGCAGAGTTCCAGTACAACCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTCTAACAGCAAATAAAACAGCAGAGTTCCAGTACAACCAATTT  200

seq1  CATTATTCCTTTTCTAGTCTTTCTAGATTTGATCATCCCAATTTGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCCTTTTCTAGTCTTTCTAGATTTGATCATCCCAATTTGATCAT  250

seq1  TTTCAGGGTGGTTAAGTAATACAGGCATAAACCAAATTTCTGTTGATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGTGGTTAAGTAATACAGGCATAAACCAAATTTCTGTTGATCAG  300

seq1  ACTCTTTTTCTATCTTTCATTCTAATGAGACCTCTGTGAATTACTGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTTCTATCTTTCATTCTAATGAGACCTCTGTGAATTACTGAACA  350

seq1  ATGTAGAGGTTCTTTTAATGGAGGCAGGGAGATAAGGATCCACATTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGGTTCTTTTAATGGAGGCAGGGAGATAAGGATCCACATTGGCT  400

seq1  TGCCCCACGCCTTGGAATTTAGGCCTATTTCAACCAAGGATCTACATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACGCCTTGGAATTTAGGCCTATTTCAACCAAGGATCTACATTTC  450

seq1  ATTTTTCCTGACTCATGATGAAAATTAAGTGAATGTGTGTGAGGTACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTGACTCATGATGAAAATTAAGTGAATGTGTGTGAGGTACTAG  500

seq1  CAGAATGTAAGACTTGTAGTGCGCCCTTGGCTTTCTCAATTAAAATGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTAAGACTTGTAGTGCGCCCTTGGCTTTCTCAATTAAAATGGAG  550

seq1  TGAAGACACAGCCCTATTCTTTTTGAGGCAGGTTTTTAATCACACAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACAGCCCTATTCTTTTTGAGGCAGGTTTTTAATCACACAACCC  600

seq1  CAGCTGGCTTGAAAGCCATTATGTAGACCAAGCTGTCCTCAAACTTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTTGAAAGCCATTATGTAGACCAAGCTGTCCTCAAACTTACAG  650

seq1  TGATCCTTCTGTCTGTATGGAGTGCTGAGATTTGAGGCTGTCTTACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTCTGTCTGTATGGAGTGCTGAGATTTGAGGCTGTCTTACCACA  700

seq1  TCTGGCAAGAGAGAACCCTTTTCTCTCTGCTTTCGTCTGCCTGGAATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAGAGAGAACCCTTTTCTCTCTGCTTTCGTCTGCCTGGAATGTG  750

seq1  ACTGTGATTGCTGGTAGCACAGCCAGGAGGGAACAGGTTGGGCCCAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTGCTGGTAGCACAGCCAGGAGGGAACAGGTTGGGCCCAGATG  800

seq1  CCAAGGAATTTCTTGGGAAATGGGAGCTGGTGCTACTGACACCAGTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAATTTCTTGGGAAATGGGAGCTGGTGCTACTGACACCAGTGTCT  850

seq1  GGCAGTTAATTCAAGATCACCAACTAACTTCTAGACTCCTTTCAATTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTAATTCAAGATCACCAACTAACTTCTAGACTCCTTTCAATTGGA  900

seq1  GAGAGGCAGACAC-TTACTTTGCCCTTGTGACTAGCAGAAGACAC-TTAA  948
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GAGAGGCAGACACTTTACTTTGCCCTTGTGACTAGCAGAAGACACTTTAA  950

seq1  TAAGATTGCAGCT-GGAAAGTCAACAGAATAGACTGGTGCAAGAGAATGC  997
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAGATTGCAGCTGGGAAAGTCAACAGAATAGACTGGTGCAAGAGAATGC  1000

seq1  TTTGATCAC-TGAATGATGCTCAGAGTATCTGTGTCTGACTGGCAGTGAA  1046
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCACTTGAATGATGCTCAGAGTATCTGTGTCTGACTGGCAGTGAA  1050

seq1  TCT-GACCCCTCTTGAAAGCAATAA-CATGTTTTCTTTCATTCGGATTCC  1094
      ||| ||||||||||||||||||||| || |||||||||||| ||||||||
seq2  TCTGGACCCCTCTTGAAAGCAATAACCAGGTTTTCTTTCATCCGGATTCC  1100

seq1  TA  1096
      ||
seq2  TA  1102


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