BAC Information

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BAC

Clone NameB6Ng01-236F10
Chromosome13 (Build37)
Map Location 87,417,770 - 87,590,080
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236F10.bB6Ng01-236F10.g
ACCGA047582GA047583
length1,1471,113
definitionB6Ng01-236F10.b B6Ng01-236F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,417,770 - 87,418,910)(87,588,948 - 87,590,080)
sequence
gaattctgtgatatttttaatattctataagagtgtgcagtagtccctgt
gatttacaaagtatacttctctatgttagtaaatatttaaataagatttc
agcaatcatgtcaagtgtttaatgtacacctagaccatctgtagatacct
ttatattgtttcttatttttaattattctgaacagattgtgtatttaatt
cttcaaatatacatgtgaggatacaattttttttctttagtttttgtaaa
ggcaatagaaatacagatccaaagatgctgatgacaaatgatgaagaaag
cctgtgaggagtctctgagtttatgtgtcacatactcggtattggggttt
gatgagagccccttatacccagcatctcttgataagaaacaggctgttta
gagaggtttggaattggcagaggcagtttcactgataagtaggagagaag
gtcatagtttccatgtgacaaacttttacttgcaattgaccaggccaatc
actacaatctgtatttctcagaaatttagatggcactataatcaataatt
tatattgattatgatttcaatgctgaagttatattgcctaatacagagat
gactatgtataagaaacgtttctcagtgatattagaacttattccaaata
tgcttgtcccttggtatgaaagggagaattacttcagtacctacttggga
aatcaaacattctttttaattcaagcttttgtacattattcacacatagg
tttgccatatataataaagcagctctagatttcttacacataagacacat
taagttttatatgatattatatgtggaaccatcaggaaatattttgtact
agttttgtgcaaatttgttgtcttctcttacaaacatttaatgtgctact
tgactcttactgtatattcaataaacaaggaatatataacaatatattag
ctaattatatagtattaaaaattaataaatattaaaataaagttacatga
attactttcatattacttgtttcttatcaaataactttctgcacccacaa
tattcttataaaatacaatatgcaaaatttaggtcttttatgttaaatac
attcctttattttattcttgcctggataaaaacatcaaggcaacata

gaattccatggagacttcattatggcttggggaaactgtactatagtctt
ttgttacatcagagaaaacaaagtgatttaggctagttcaatttcagcaa
gttgataactttgcccttacccatcagttatcctcaatcactgttgactg
tgttcagttctatgggagtccacatctcactctgtgcaaaacaagatttg
ttttaatgtttcctgactttctgtgcaggccttgtgtttcagcaggaata
atgagaatttagcagggcccaggtctaatttctgttgaaatggtggtacc
aattatctctgttggcttcttctgaaaccaattatgttgaaaagtagaat
aaacaaaacaaattatacgagaaagctagaaaaaaaatatatatatatac
ttatatatgtatatatattcatatatagttgttactttttctttagtgct
aacttttgcttataatgtagaatctaattttagactttcatgatgtaagt
gatttcagaatactgaaaaatggcagctagactaggcattttaaaattta
atctaggggccaaaaaagtgactcagtaggtaaaggcatttactgccatt
cctaagagtttaagttggatcacaggatgcatatggtggaaagagaaaaa
caattatttcaggtgtccactgacttccatgtgtgtacagtggcatgtat
ccatcacagataaataattgaatgtatcctttaaaaattagatgtgggca
ttcaaattgaaaaaaaaaaaagcctaaagacagacatttttaaagtagag
tgaaatatattttcaccaggagatattgtaagaaagtgatctgtaagaag
agcaggatttaattctatcatcaaaagccagatgtcaatggaagcaacac
aagcaaagtagccaatgaaataatctagcttcaactctgacttaatgaaa
catattcaaaaaataataataagctgtttcactaattaattaattatata
tttacacaacaaattggctcaatgtaaattacttctataaaacaggaaaa
tgctgctagtggatgcctagtggaaataatcacagagtagtaacataatc
ctgaaggatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87417770_87418910
seq2: B6Ng01-236F10.b_46_1192

seq1  GAATTCTGTGATATTTTTAATATTCTATAAGAGTGTGCAGTAGTCCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGATATTTTTAATATTCTATAAGAGTGTGCAGTAGTCCCTGT  50

seq1  GATTTACAAAGTATACTTCTCTATGTTAGTAAATATTTAAATAAGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACAAAGTATACTTCTCTATGTTAGTAAATATTTAAATAAGATTTC  100

seq1  AGCAATCATGTCAAGTGTTTAATGTACACCTAGACCATCTGTAGATACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCATGTCAAGTGTTTAATGTACACCTAGACCATCTGTAGATACCT  150

seq1  TTATATTGTTTCTTATTTTTAATTATTCTGAACAGATTGTGTATTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTTTCTTATTTTTAATTATTCTGAACAGATTGTGTATTTAATT  200

seq1  CTTCAAATATACATGTGAGGATACAATTTTTTTTCTTTAGTTTTTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATATACATGTGAGGATACAATTTTTTTTCTTTAGTTTTTGTAAA  250

seq1  GGCAATAGAAATACAGATCCAAAGATGCTGATGACAAATGATGAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAGAAATACAGATCCAAAGATGCTGATGACAAATGATGAAGAAAG  300

seq1  CCTGTGAGGAGTCTCTGAGTTTATGTGTCACATACTCGGTATTGGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGGAGTCTCTGAGTTTATGTGTCACATACTCGGTATTGGGGTTT  350

seq1  GATGAGAGCCCCTTATACCCAGCATCTCTTGATAAGAAACAGGCTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGCCCCTTATACCCAGCATCTCTTGATAAGAAACAGGCTGTTTA  400

seq1  GAGAGGTTTGGAATTGGCAGAGGCAGTTTCACTGATAAGTAGGAGAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTTGGAATTGGCAGAGGCAGTTTCACTGATAAGTAGGAGAGAAG  450

seq1  GTCATAGTTTCCATGTGACAAACTTTTACTTGCAATTGACCAGGCCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTTTCCATGTGACAAACTTTTACTTGCAATTGACCAGGCCAATC  500

seq1  ACTACAATCTGTATTTCTCAGAAATTTAGATGGCACTATAATCAATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATCTGTATTTCTCAGAAATTTAGATGGCACTATAATCAATAATT  550

seq1  TATATTGATTATGATTTCAATGCTGAAGTTATATTGCCTAATACAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGATTATGATTTCAATGCTGAAGTTATATTGCCTAATACAGAGAT  600

seq1  GACTATGTATAAGAAACGTTTCTCAGTGATATTAGAACTTATTCCAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTATAAGAAACGTTTCTCAGTGATATTAGAACTTATTCCAAATA  650

seq1  TGCTTGTCCCTTGGTATGAAAGGGAGAATTACTTCAGTACCTACTTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCCCTTGGTATGAAAGGGAGAATTACTTCAGTACCTACTTGGGA  700

seq1  AATCAAACATTCTTTTTAATTCAAGCTTTTGTACATTATTCACACATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACATTCTTTTTAATTCAAGCTTTTGTACATTATTCACACATAGG  750

seq1  TTTGCCATATATAATAAAGCAGCTCTAGATTTCTTACACATAAGACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATATATAATAAAGCAGCTCTAGATTTCTTACACATAAGACACAT  800

seq1  TAAGTTTTATATGATATTATATGTGGAACCATCAGGAAATATTTTGTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTATATGATATTATATGTGGAACCATCAGGAAATATTTTGTACT  850

seq1  AGTTTTGTGCAAATTTGTTGTCTTCTCTTACAAACATTTAATGTGCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGCAAATTTGTTGTCTTCTCTTACAAACATTTAATGTGCTACT  900

seq1  TGACTCTTACTGTATATTCAATAAAC-AGGAATATATAACAATATATTAG  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGACTCTTACTGTATATTCAATAAACAAGGAATATATAACAATATATTAG  950

seq1  CTAATTATATAGTATTAAAAATTAATAAATATTAAAATAAAGTTACATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATATAGTATTAAAAATTAATAAATATTAAAATAAAGTTACATGA  1000

seq1  ATTACTTTCAATATACTTGTTTCTTATCAAATAACTTTCTGCACCCAC-A  1048
      ||||||||||   ||||||||||||||||||||||||||||||||||| |
seq2  ATTACTTTCATATTACTTGTTTCTTATCAAATAACTTTCTGCACCCACAA  1050

seq1  TAT--CTAT-AAATACAATATGC-AAATTTA-GTCTTTTATGTTTATAAT  1093
      |||   ||| ||||||||||||| ||||||| ||||||||||||   |||
seq2  TATTCTTATAAAATACAATATGCAAAATTTAGGTCTTTTATGTT--AAAT  1098

seq1  ACATT-CTTTATTTTATTCTTTGCCT-GATAAAAACATCAAGCCAACATA  1141
      ||||| ||||||||||||| |||||| ||||||||||||||| |||||||
seq2  ACATTCCTTTATTTTATTC-TTGCCTGGATAAAAACATCAAGGCAACATA  1147


seq1: chr13_87588948_87590080
seq2: B6Ng01-236F10.g_66_1178 (reverse)

seq1  TTTCATCCTCTCAAGA-TATGTTACTACTCTGGTGATTATTTCAACCTAG  49
      ||||||||| ||| || |||||||||||||| ||||||||||| ||   |
seq2  TTTCATCCT-TCAGGATTATGTTACTACTCT-GTGATTATTTCCACTAGG  48

seq1  CATCCCACTAAACAGCATTTTTTTCCTGTTTTATAAGAAAAGTTATTTAC  99
      ||| ||||| | |||||   ||||||||||||||   | |||| ||||||
seq2  CAT-CCACT-AGCAGCA---TTTTCCTGTTTTAT---AGAAGTAATTTAC  90

seq1  AATTTGAGCCAATTTTGTTGGTGGTAAATTATATTAATTAATTAATTAGT  149
      |  ||||||||| |||||||   ||||| |||| ||||||||||||||||
seq2  A--TTGAGCCAA-TTTGTTG--TGTAAA-TATA-TAATTAATTAATTAGT  133

seq1  GAAAACAGCTTTATTA-TATTTTTTGAAATATGTTTTCATTAAGTCAGAG  198
      | ||||||| |||||| ||||||||| |||||| ||||||||||||||||
seq2  G-AAACAGC-TTATTATTATTTTTTG-AATATG-TTTCATTAAGTCAGAG  179

seq1  TTTGAAGCTAGATTATTTCATTGGCTACTTTGCTTTGTGTTGCTTCCATT  248
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  -TTGAAGCTAGATTATTTCATTGGCTACTTTGC-TTGTGTTGCTTCCATT  227

seq1  GACATCTGGCTTTTGATGATAGAATTAAATCCTGCTCTTCTTACAGATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGGCTTTTGATGATAGAATTAAATCCTGCTCTTCTTACAGATCA  277

seq1  CTTTCTTACAATATCTCCTGGTGAAAATATATTTCACTCTACTTTAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACAATATCTCCTGGTGAAAATATATTTCACTCTACTTTAAAAA  327

seq1  TGTCTGTCTTTAGGC-TTTTTTTTTTTCAATTTGAATGCCCACATCTAAT  397
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTTTAGGCTTTTTTTTTTTTCAATTTGAATGCCCACATCTAAT  377

seq1  TTTTAAAGGATACATTCAATTATTTATCTGTGATGGATACATGCCACTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGATACATTCAATTATTTATCTGTGATGGATACATGCCACTGT  427

seq1  ACACACATGGAAGTCAGTGGACACCTGAAATAATTGTTTTTCTCTTTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGGAAGTCAGTGGACACCTGAAATAATTGTTTTTCTCTTTCCA  477

seq1  CCATATGCATCCTGTGATCCAACTTAAACTCTTAGGAATGGCAGTAAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCATCCTGTGATCCAACTTAAACTCTTAGGAATGGCAGTAAATG  527

seq1  CCTTTACCTACTGAGTCACTTTTTTGGCCCCTAGATTAAATTTTAAAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCTACTGAGTCACTTTTTTGGCCCCTAGATTAAATTTTAAAATG  577

seq1  CCTAGTCTAGCTGCCATTTTTCAGTATTCTGAAATCACTTACATCATGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTAGCTGCCATTTTTCAGTATTCTGAAATCACTTACATCATGAA  627

seq1  AGTCTAAAATTAGATTCTACATTATAAGCAAAAGTTAGCACTAAAGAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAATTAGATTCTACATTATAAGCAAAAGTTAGCACTAAAGAAAA  677

seq1  AGTAACAACTATATATGAATATATATACATATATAAGTATATATATATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAACTATATATGAATATATATACATATATAAGTATATATATATAT  727

seq1  TTTTTTTCTAGCTTTCTCGTATAATTTGTTTTGTTTATTCTACTTTTCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAGCTTTCTCGTATAATTTGTTTTGTTTATTCTACTTTTCAA  777

seq1  CATAATTGGTTTCAGAAGAAGCCAACAGAGATAATTGGTACCACCATTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGGTTTCAGAAGAAGCCAACAGAGATAATTGGTACCACCATTTC  827

seq1  AACAGAAATTAGACCTGGGCCCTGCTAAATTCTCATTATTCCTGCTGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATTAGACCTGGGCCCTGCTAAATTCTCATTATTCCTGCTGAAA  877

seq1  CACAAGGCCTGCACAGAAAGTCAGGAAACATTAAAACAAATCTTGTTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCCTGCACAGAAAGTCAGGAAACATTAAAACAAATCTTGTTTTG  927

seq1  CACAGAGTGAGATGTGGACTCCCATAGAACTGAACACAGTCAACAGTGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTGAGATGTGGACTCCCATAGAACTGAACACAGTCAACAGTGAT  977

seq1  TGAGGATAACTGATGGGTAAGGGCAAAGTTATCAACTTGCTGAAATTGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATAACTGATGGGTAAGGGCAAAGTTATCAACTTGCTGAAATTGAA  1027

seq1  CTAGCCTAAATCACTTTGTTTTCTCTGATGTAACAAAAGACTATAGTACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTAAATCACTTTGTTTTCTCTGATGTAACAAAAGACTATAGTACA  1077

seq1  GTTTCCCCAAGCCATAATGAAGTCTCCATGGAATTC  1133
      ||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCAAGCCATAATGAAGTCTCCATGGAATTC  1113


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