BAC Information

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BAC

Clone NameB6Ng01-237C04
Chromosome13 (Build37)
Map Location 63,862,468 - 63,978,411
singlet/doubletdoublet
Overlap geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik
Upstream geneLOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
Downstream geneEG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237C04.bB6Ng01-237C04.g
ACCGA048178GA048179
length1,2161,071
definitionB6Ng01-237C04.b B6Ng01-237C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,862,468 - 63,863,743)(63,977,328 - 63,978,411)
sequence
gaattcttcccttgcagcaggtatcactcgggaggtgttcagctgagttt
gccagattaagggaggcaatgacagtggagatcccattagccaaccacat
ccattagacccatctattcctcaggtgaagaatgactattgtactaccta
tggggtccaataaacctgggatattagagatggagatggagccactggaa
atgccactttagtccctgctgaagcccaggttccttattaaaatcctgtt
atggctgatcccagctatcaatacacctaggaagagagaacgtcaattaa
ataattgcctcttttagatgggcctatggacatgtctgtgtaatgggtat
actgcagtgggcccattcgtaggtaggtgggtttgatttgtataagaaag
ttagtgaatgtgagccttatagcaagccagagagcagtgttcctctgtgg
ctcctgcctgggtttccattgaagatggtctaagagatgaaaggtttatt
ccaaacccttttctccccaggaagcttttagccatggtgttgtcacaact
gcagagatatagctagaacagatactttccatgataggcaacaaggaatg
actcagcaaacagtagttctcagccttcctcatgttgtggaaaccccccc
aaccctaaaactactttcatagctacttcataactatatttctgcaactg
ttatgaattaattgttctgtaaatatctatgttttctgatggttttaggc
aaccctgttgaaagggtcattcaaccccaggaaggacttgtgatccccag
gttgagaaccactgcagtacaaaggttatcactgtacaacaatgaaagtc
aagtatcagttctcattcattttgctagtttctaggtctccagcaactac
ttcaaagcctccttaaataaaaatacaaatttaccaagtagcaagcctaa
agcatgcatgccgtttcagcacaatctttagcttcccccagctccttcta
ctgtcccattgagatttctctcttctactgtcccattggagatctcctct
cctctactgtcccaatgaagaattctcttctcctctactgtcccatttga
ggattcttctcctcctctaactggtccaattggagattcacctctccctc
tactggtccaattggagattctctcctcctctactgtcccaatgaagaat
tctctctctccctact
gaattcatagaaatctacctcctcttgaatctgcagtgctggggttaaag
ttgttcatcatgacacatgggtatgcttgatttattttaaaattattatc
ttttctgttttctcgagacaaaggctaactctgtagcccaggatggccta
caatttatgctaattctatctcagtctcccgagtgttattaaaattacag
gtataaactactatgcttaactgcttgctttattctgaaacttttaaaaa
aattatgttattatcacaatgttttcagaagtaagtggaaaagaagttca
aatatattggtccaggccaacttagaaatgactttctactttcaacaata
taagagctgctgagatttaagtaacaaactttaaattgaaatctgaaata
gagatgtttgtctgtggaaatcatggttaatggtcttccatagatttttc
ttctttgttaatttcaaaatgtttgggcatgtaaggaggtttattgctcc
tttaaaagagtacttgatggcactgatggaagggatcatgggtttatgac
cagggaactgtgtctgatcggtgggactttgttttattgtttgtattttg
tcctttttgtacacatgcccaaagaatgtcaagatgagagctttttagga
aatggaaaaaaaaattaactcatagcttttatctaaaagagattttaaaa
gtagctgtatttttttactgctttgcttctaggctctaataatttatttt
gaaattgtggtcataaaagaggaggctagaactgaggcctgtaaaatatc
cctcaaacagccctggcaatgtcctcaacactctgctgttttagccctga
actgcccagcaatcacaaagcacaaaacacaagatacttctacatcatgt
agttaggaaaacacctacttgctacataaaattccactacttccaaccgc
tgacacctgcagctacaagctcaatgattattttttaaaagcactgtata
ttcctagcttctaatttcgctctagtaaacaacagtgataatcctgtatg
atatactggtaccatacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63862468_63863743
seq2: B6Ng01-237C04.b_52_1267

seq1  GAATTCTTCCCTTGCAGCAGGTATCACTCGGGAGGTGTTCAGCTGAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTTGCAGCAGGTATCACTCGGGAGGTGTTCAGCTGAGTTT  50

seq1  GCCAGATTAAGGGAGGCAATGACAGTGGAGATCCCATTAGCCAACCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTAAGGGAGGCAATGACAGTGGAGATCCCATTAGCCAACCACAT  100

seq1  CCATTAGACCCATCTATTCCTCAGGTGAAGAATGACTATTGTACTACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGACCCATCTATTCCTCAGGTGAAGAATGACTATTGTACTACCTA  150

seq1  TGGGGTCCAATAAACCTGGGATATTAGAGATGGAGATGGAGCCACTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCAATAAACCTGGGATATTAGAGATGGAGATGGAGCCACTGGAA  200

seq1  ATGCCACTTTAGTCCCTGCTGAAGCCCAGGTTCCTTATTAAAATCCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTTTAGTCCCTGCTGAAGCCCAGGTTCCTTATTAAAATCCTGTT  250

seq1  ATGGCTGATCCCAGCTATCAATACACCTAGGAAGAGAGAACGTCAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGATCCCAGCTATCAATACACCTAGGAAGAGAGAACGTCAATTAA  300

seq1  ATAATTGCCTCTTTTAGATGGGCCTATGGACATGTCTGTGTAATGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCCTCTTTTAGATGGGCCTATGGACATGTCTGTGTAATGGGTAT  350

seq1  ACTGCAGTGGGCCCATTCGTAGGTAGGTGGGTTTGATTTGTATAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTGGGCCCATTCGTAGGTAGGTGGGTTTGATTTGTATAAGAAAG  400

seq1  TTAGTGAATGTGAGCCTTATAGCAAGCCAGAGAGCAGTGTTCCTCTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAATGTGAGCCTTATAGCAAGCCAGAGAGCAGTGTTCCTCTGTGG  450

seq1  CTCCTGCCTGGGTTTCCATTGAAGATGGTCTAAGAGATGAAAGGTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTGGGTTTCCATTGAAGATGGTCTAAGAGATGAAAGGTTTATT  500

seq1  CCAAACCCTTTTCTCCCCAGGAAGCTTTTAGCCATGGTGTTGTCACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCTTTTCTCCCCAGGAAGCTTTTAGCCATGGTGTTGTCACAACT  550

seq1  GCAGAGATATAGCTAGAACAGATACTTTCCATGATAGGCAACAAGGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATATAGCTAGAACAGATACTTTCCATGATAGGCAACAAGGAATG  600

seq1  ACTCAGCAAACAGTAGTTCTCAGCCTTCCTCATGTTGTGGAAACCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAAACAGTAGTTCTCAGCCTTCCTCATGTTGTGGAAACCCCCCC  650

seq1  AACCCTAAAACTACTTTCATAGCTACTTCATAACTATATTTCTGCAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAAAACTACTTTCATAGCTACTTCATAACTATATTTCTGCAACTG  700

seq1  TTATGAATTAATTGTTCTGTAAATATCTATGTTTTCTGATGGTTTTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATTAATTGTTCTGTAAATATCTATGTTTTCTGATGGTTTTAGGC  750

seq1  AACCCTGTTGAAAGGGTCATTCAACCCCAGGAAGGACTTGTGATCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTTGAAAGGGTCATTCAACCCCAGGAAGGACTTGTGATCCCCAG  800

seq1  GTTGAGAACCACTGCAGTAC-AAGGTTATCACTGTACAACAATGAAAGTC  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTGAGAACCACTGCAGTACAAAGGTTATCACTGTACAACAATGAAAGTC  850

seq1  AAGTATCAGTTCTCATTCATTTTGCTAGTTTCTAGGTCTCCAGCAACTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCAGTTCTCATTCATTTTGCTAGTTTCTAGGTCTCCAGCAACTAC  900

seq1  TTCAAAGCCTCCTTAAATAAAAATACAAATTTACCAAGTAGCAAGCCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCCTCCTTAAATAAAAATACAAATTTACCAAGTAGCAAGCCTAA  950

seq1  AGCATGCATGCCGTTTCAGCACAATCTTTAGCTTCCCCCAGCTCC-TCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCATGCATGCCGTTTCAGCACAATCTTTAGCTTCCCCCAGCTCCTTCTA  1000

seq1  CTGTCCCATTGAGATCTCTCTCCTCTACTGTCCCATT-GAGATCT-CTCT  1046
      ||||||||||||||| |||||| |||||||||||||| ||||||| ||||
seq2  CTGTCCCATTGAGATTTCTCTCTTCTACTGTCCCATTGGAGATCTCCTCT  1050

seq1  CCTCTACTGTCCCATTG-AGA--TCTC-TCTCCTCTACTGTCCCA-TTGA  1091
      |||||||||||||| || |||  |||| ||||||||||||||||| ||||
seq2  CCTCTACTGTCCCAATGAAGAATTCTCTTCTCCTCTACTGTCCCATTTGA  1100

seq1  -GATCTCTCTCCTCTACTGTCCCATTGAGATCACTCTCCTCT-ACT-GTC  1138
       |||   ||| |||                     ||||||| ||| |||
seq2  GGAT---TCTTCTC---------------------CTCCTCTAACTGGTC  1126

seq1  CCATT-GAGAT----CTCTCTCCTCTACT-GTCCCATT-GAGA-TCTCT-  1179
      | ||| |||||    ||||| |||||||| |||| ||| |||| ||||| 
seq2  CAATTGGAGATTCACCTCTC-CCTCTACTGGTCCAATTGGAGATTCTCTC  1175

seq1  CTCCTCTACTGTCCCATTG-AGA--TCTCTCTCTCCTCTACTGTCCCATT  1226
      |||||||||||||||| || |||  ||||||||||| |||||        
seq2  CTCCTCTACTGTCCCAATGAAGAATTCTCTCTCTCC-CTACT--------  1216

seq1  GAGATCTCTCTCTCCTCTACTGTCCCATTGAGATCTCTCTCTCCTCTACT  1276
                                                        
seq2  --------------------------------------------------  1216

seq1: chr13_63977328_63978411
seq2: B6Ng01-237C04.g_65_1135 (reverse)

seq1  GTGTGTATTGGTACCAGTATTAATCCAATACAGGATTATCAACTGGTTTG  50
      ||||||| ||||||||||||  |||  ||||||||||||| ||||  |||
seq2  GTGTGTA-TGGTACCAGTAT--ATC--ATACAGGATTATC-ACTG--TTG  42

seq1  TTTACTAGAGCGAAATTAGAAGCTTAAGGAATTATTACAGTGCTTTT-AA  99
      ||||||||||||||||||||||||  ||||||   |||||||||||| ||
seq2  TTTACTAGAGCGAAATTAGAAGCT--AGGAAT--ATACAGTGCTTTTAAA  88

seq1  AAATAATCATTTGAGCTTTGTAGCTGCAGGTGTCAGCGGTTGGAAGTAGT  149
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  AAATAATCA-TTGAGC-TTGTAGCTGCAGGTGTCAGCGGTTGGAAGTAGT  136

seq1  GGAATTTTATGTAGCAAGTAGGTGTTTTCCTAACTACATGATGTAGAAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTATGTAGCAAGTAGGTGTTTTCCTAACTACATGATGTAGAAGT  186

seq1  ATCTTGTGTTTTGTGCTTTGTGATTGCTGGGCAGTTCAGGGCTAAAACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGTTTTGTGCTTTGTGATTGCTGGGCAGTTCAGGGCTAAAACAG  236

seq1  CAGAGTGTTGAGGACATTGCCAGGGCTGTTTGAGGGATATTTTACAGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTGAGGACATTGCCAGGGCTGTTTGAGGGATATTTTACAGGCC  286

seq1  TCAGTTCTAGCCTCCTCTTTTATGACCACAATTTCAAAATAAATTATTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTAGCCTCCTCTTTTATGACCACAATTTCAAAATAAATTATTAG  336

seq1  AGCCTAGAAGCAAAGCAGTAAAAAAATACAGCTACTTTTAAAATCTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAAGCAAAGCAGTAAAAAAATACAGCTACTTTTAAAATCTCTTT  386

seq1  TAGATAAAAGCTATGAGTTAATTTTTTTTTCCATTTCCTAAAAAGCTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAAGCTATGAGTTAATTTTTTTTTCCATTTCCTAAAAAGCTCTC  436

seq1  ATCTTGACATTCTTTGGGCATGTGTACAAAAAGGACAAAATACAAACAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACATTCTTTGGGCATGTGTACAAAAAGGACAAAATACAAACAAT  486

seq1  AAAACAAAGTCCCACCGATCAGACACAGTTCCCTGGTCATAAACCCATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTCCCACCGATCAGACACAGTTCCCTGGTCATAAACCCATGA  536

seq1  TCCCTTCCATCAGTGCCATCAAGTACTCTTTTAAAGGAGCAATAAACCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCATCAGTGCCATCAAGTACTCTTTTAAAGGAGCAATAAACCTC  586

seq1  CTTACATGCCCAAACATTTTGAAATTAACAAAGAAGAAAAATCTATGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGCCCAAACATTTTGAAATTAACAAAGAAGAAAAATCTATGGAA  636

seq1  GACCATTAACCATGATTTCCACAGACAAACATCTCTATTTCAGATTTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAACCATGATTTCCACAGACAAACATCTCTATTTCAGATTTCAA  686

seq1  TTTAAAGTTTGTTACTTAAATCTCAGCAGCTCTTATATTGTTGAAAGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTTGTTACTTAAATCTCAGCAGCTCTTATATTGTTGAAAGTAG  736

seq1  AAAGTCATTTCTAAGTTGGCCTGGACCAATATATTTGAACTTCTTTTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATTTCTAAGTTGGCCTGGACCAATATATTTGAACTTCTTTTCCA  786

seq1  CTTACTTCTGAAAACATTGTGATAATAACATAATTTTTTTAAAAGTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCTGAAAACATTGTGATAATAACATAATTTTTTTAAAAGTTTCA  836

seq1  GAATAAAGCAAGCAGTTAAGCATAGTAGTTTATACCTGTAATTTTAATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGCAAGCAGTTAAGCATAGTAGTTTATACCTGTAATTTTAATAA  886

seq1  CACTCGGGAGACTGAGATAGAATTAGCATAAATTGTAGGCCATCCTGGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGAGACTGAGATAGAATTAGCATAAATTGTAGGCCATCCTGGGC  936

seq1  TACAGAGTTAGCCTTTGTCTCGAGAAAACAGAAAAGATAATAATTTTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTTAGCCTTTGTCTCGAGAAAACAGAAAAGATAATAATTTTAAA  986

seq1  ATAAATCAAGCATACCCATGTGTCATGATGAACAACTTTAACCCCAGCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAGCATACCCATGTGTCATGATGAACAACTTTAACCCCAGCAC  1036

seq1  TGCAGATTCAAGAGGAGGTAGATTTCTATGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  TGCAGATTCAAGAGGAGGTAGATTTCTATGAATTC  1071