BAC Information

Click to search

BAC

Clone NameB6Ng01-237E20
Chromosome13 (Build37)
Map Location 84,534,318 - 84,535,470
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
Downstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237E20.bB6Ng01-237E20.g
ACCGA048300GA048301
length1,1741,168
definitionB6Ng01-237E20.b B6Ng01-237E20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacaacatcctacaacttgcaatgtgcacacaaatacaaatgcc
tttaattttctggtatatatttgttcattgggcctatgatatatactaat
gttgtcacactcatggtaagaaagaaaggttcacctcaaaagaccaaaga
catcttgatctgtgtaatttgaagggtggggggacttccccaggaagatt
cagtaccactcagtagaaatgtattaaatttgctatagctacagggaatt
ggaagaaagaataattaaaatatgaatatagacttttgatttggaaacac
ctatcccaaagacaaagagaacaaaatccacacatgcacacgttaacatg
cctttcactaaaatatgaagacatcacataaagtcaccccatgaaatggc
tgaaaatatctgctttgctgagatgaaaagaaatatagatatccccaaaa
tgcatgttccatataactaaagctaagggtagaatccaaatcccatgcta
atttagaaaaagaaaagaaaaaaaaaactatgtagtcatgtaaaaaacta
catggtattggtacagagacagacatgttaatcaatggaatagaattgaa
gacacagaaataaaaccacacactgatggagacttgatctttgacaaaga
agtcaaaaatatacaatcctgagtgaggtaacacagacccaaaatgacat
gcatggtatgtactcacgactaagaggatattagccaaaaatttacacag
gatataatccacagaactcaaggttaagaaggaaaagggcccaagtgagg
atgcttcaatccctcttgggagagagaagaaagggggcagagggagggag
gaactggaatgagagagcagaggagaaaggggaaaagggaacatgatcag
gtattggaggaggggaacaggagtgaagccctgaaagccagcagaatgaa
tgggaaacagacaacctcagagtggatgtgagaggtagagggaccttcta
gaaagactggaggtgagagattttcagataaagggactgacctagatgga
attcccatcagggagagagggaacctgtagagtcactcagtaggaagacc
ggcatcaggtgagggataaggctcagtgcacctcagactctggacctgga
acgtttgccgtctcaaggaaactg
gaattctcagctcctccagtgccgtgtctgtctgcacactgccacgtttc
ctgccttgataatgaactgaacctctgaacctgtaagcctaccctaatta
aatgttgtcctttattagagttgtcctacctcatgatgtcttttcacagt
aatggaaaccctactcctaaatgctccaataaattatctcaacaaagaaa
ttgaataagaaaaatttcagaactaaaggacatagatttctgtatcaaaa
aaacctaccttattttaataaataaataaataaattaaaaaaaatatggg
ctattggagaatccataatgagaccactcatcaggaactctcagaacaac
agggccataaggaagaaaagtattggagaagaatagcttatacagtgtac
tggctggttttgtgtcaacttgacacagctggagttatcacagaaaaagg
agcttcagttgaggaaatgcctccatgagatacaactgtaaggcattttc
tcaattagtgatcaagggggaaaggccccttgtgggtgggaccatctctg
ggctggtagtcttggttctataagagatcaggctgagcaaaccaagggaa
gcaagccagtaaagaacatgcctccatggcctctgcatcagctcctgctc
catgacctgcttgagttccagttctgacttctttcagtgatgaacagcaa
tgtggaaagtgtaagctgaataaaccctttcctccccaacttgcttcttg
gtcatgatgttttgtccaggaatagaaaccctgactaagacacacagcat
caggagtcgtgatggcaaccaactcctcaatagtaacagtggaagcagaa
gtctccagtcctcgcaataaagcacacaggacaacaacttcacactgtag
gcacaatctcgggaaaactgagtccagttcagcttttcttgcacaagctt
tcttgagatgagctaccacagtgctagaccagcggtaaaaaatggtatta
cagtttacagctgttccctggctttctgtcagattttcttccccaccctt
atccccacagaaaacatttctgaccaatcagaaggaaagaagcacatttt
cttgcacctctttccttgacatttgggtgcattctaggtctagaacaaat
gttctctcaattttgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84534318_84535470
seq2: B6Ng01-237E20.g_69_1236

seq1  GAATTCTCAGCTCCTCCAGTGCCGTGTCTGTCTGCACACTGCCACGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTCCAGTGCCGTGTCTGTCTGCACACTGCCACGTTTC  50

seq1  CTGCCTTGATAATGAACTGAACCTCTGAACCTGTAAGCCTACCCTAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGATAATGAACTGAACCTCTGAACCTGTAAGCCTACCCTAATTA  100

seq1  AATGTTGTCCTTTATTAGAGTTGTCCTACCTCATGATGTCTTTTCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTCCTTTATTAGAGTTGTCCTACCTCATGATGTCTTTTCACAGT  150

seq1  AATGGAAACCCTACTCCTAAATGCTCCAATAAATTATCTCAACAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAACCCTACTCCTAAATGCTCCAATAAATTATCTCAACAAAGAAA  200

seq1  TTGAATAAGAAAAATTTCAGAACTAAAGGACATAGATTTCTGTATCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGAAAAATTTCAGAACTAAAGGACATAGATTTCTGTATCAAAA  250

seq1  AAACCTACCTTATTTTAATAAATAAATAAATAAATTAAAAAAAATATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTACCTTATTTTAATAAATAAATAAATAAATTAAAAAAAATATGGG  300

seq1  CTATTGGAGAATCCATAATGAGACCACTCATCAGGAACTCTCAGAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAGAATCCATAATGAGACCACTCATCAGGAACTCTCAGAACAAC  350

seq1  AGGGCCATAAGGAAGAAAAGTATTGGAGAAGAATAGCTTATACAGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATAAGGAAGAAAAGTATTGGAGAAGAATAGCTTATACAGTGTAC  400

seq1  TGGCTGGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAAAAAGG  450

seq1  AGCTTCAGTTGAGGAAATGCCTCCATGAGATACAACTGTAAGGCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGTTGAGGAAATGCCTCCATGAGATACAACTGTAAGGCATTTTC  500

seq1  TCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTG  550

seq1  GGCTGGTAGTCTTGGTTCTATAAGAGATCAGGCTGAGCAAACCAAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAGTCTTGGTTCTATAAGAGATCAGGCTGAGCAAACCAAGGGAA  600

seq1  GCAAGCCAGTAAAGAACATGCCTCCATGGCCTCTGCATCAGCTCCTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGTAAAGAACATGCCTCCATGGCCTCTGCATCAGCTCCTGCTC  650

seq1  CATGACCTGCTTGAGTTCCAGTTCTGACTTCTTTCAGTGATGAACAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTGCTTGAGTTCCAGTTCTGACTTCTTTCAGTGATGAACAGCAA  700

seq1  TGTGGAAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTG  750

seq1  GTCATGATGTTTTGTCCAGGAATAGAAACCCTGACTAAGACACACAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGATGTTTTGTCCAGGAATAGAAACCCTGACTAAGACACACAGCAT  800

seq1  CAGGAGTCGTGATGGCAACCAACTCCTCAATAGTAACAGTGGAAGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCGTGATGGCAACCAACTCCTCAATAGTAACAGTGGAAGCAGAA  850

seq1  GTCTCCAGTCCTCGCAAATAAAGCACACAGGACAACAACTTCACACTGTA  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGTCCTCGC-AATAAAGCACACAGGACAACAACTTCACACTGTA  899

seq1  GGCACAATCTCGGGAAAACTGAGTCCAGTTCAGCTTT--CTGCACAAGC-  947
      |||||||||||||||||||||||||||||||||||||   ||||||||| 
seq2  GGCACAATCTCGGGAAAACTGAGTCCAGTTCAGCTTTTCTTGCACAAGCT  949

seq1  TTCTTGAGATGAGCTACCACAGTGCTAGACCAGCGGTAAAAA--TGTA-T  994
      ||||||||||||||||||||||||||||||||||||||||||   ||| |
seq2  TTCTTGAGATGAGCTACCACAGTGCTAGACCAGCGGTAAAAAATGGTATT  999

seq1  ACAAGTTACAGCTGTTTCCTGGCTTTCTGTCAG-TTTTCTTCCCCACCC-  1042
      |||  ||||||||||| |||||||||||||||| ||||||||||||||| 
seq2  ACAGTTTACAGCTGTTCCCTGGCTTTCTGTCAGATTTTCTTCCCCACCCT  1049

seq1  TATCCCCACAGAAACCA-TTCTGACC-ATCAGAA-GAAAGAAGCAACATT  1089
      |||||||||||||| || |||||||| ||||||| ||||||||||   ||
seq2  TATCCCCACAGAAAACATTTCTGACCAATCAGAAGGAAAGAAGCACATTT  1099

seq1  TC-TGCA-CTCTTTCCTTGACATTTGTGTGTATTCTAAGTCCTAGAACAA  1137
      || |||| |||||||||||||||||| ||| |||||| || |||||||||
seq2  TCTTGCACCTCTTTCCTTGACATTTGGGTGCATTCTAGGT-CTAGAACAA  1148

seq1  ATG---TCTC-ATTTTGAAA  1153
      |||   |||| |||||||||
seq2  ATGTTCTCTCAATTTTGAAA  1168