BAC Information

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BAC

Clone NameB6Ng01-238E05
Chromosome13 (Build37)
Map Location 6,025,304 - 6,108,889
singlet/doubletdoublet
Overlap genenone
Upstream gene1700016G22Rik, Klf6
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238E05.bB6Ng01-238E05.g
ACCGA049004GA049005
length1,101993
definitionB6Ng01-238E05.b B6Ng01-238E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,107,786 - 6,108,889)(6,025,304 - 6,026,268)
sequence
gaattctataccaaagcaccataattggcttaaacatcagaaatctatga
tctcacagttctgaaaatgggaagtcccaagtcatcaagtgggaagtggg
tgtagacagccaccttctgaggttctccacatcctcctatggttttccct
gtgtcctgacctcatcttcttatcagtacagcagcggatggattcatgct
ttatgactttatattacactaaccccctttacaatgcttactccaaatac
agccacattctgaggtaatggagctaaagatttccggataagaacattga
agggacacaatttaccagataaccatgtgtgtgggtgtggttccttactt
catcgggaagtttcatccagttgaagagtttaaaaaatgatcttgaggcc
ttagcagtctgtgctatgactcagatgaacaaaccacatagggttctttg
ttttcttgggcttcacagacacatcacaaaggatcgctcgcctgagtgga
cttcgttcttcttaaaggtcaggctctcagcatcccttctgagctctatc
cagagtacgtgcctccagtcagtcctctctggcttgaaatactctgcaga
tgagaaacccaggaagagagaccaggatccctttagagaagatggaaaag
aagaacaaggacaagccagactactttcatcacacaaatctctctctatt
gtgtactgactgttttggcaaatgatgaatggttattagagaaatgttgg
aaaatatgggcaaaaatggaagcaaaaaccattgcatgtgttagttgcac
ttaccaacaacaactactcatcttgagggtgggtatgtatctaaatcttt
tgtttttatgttggaatgttcagaggaaatctccattcaaaactacagta
catttatctagtgcatttcaccagtaagaggttgcctactggatgtgatg
tcctgaatgtgtagcttacattgtatgtaattaggaatatccttaaaaat
tctgtgatggctacataatatcctatctaatagagtaaaatcatttagtc
attttcaaagtgttaagcatttcctatgtcaccaggtctatgtaaactag
a

catgccctgatgcacctagctatagaagaggtccttctgagaggacgatg
accaccttacatgggaggttgccacatgattgaggtatgaggcaaaccag
actgtggccacttctcagagggtgtcaggctcaccaaggcaatgatgtgg
ccatcactgactgtccggcaaaaccttctggctgcaggaagagaatagga
aaatctgaaatggagaataaaaaaaattcagttaaaaaaatcacaccata
aatactaagtcaaacttactatgctacaactgcatttggctgttttgggc
acagacagatcttgatgagatacatgcaaaagccaggaagaagagacaga
aaagtctaccaatggcaccttcatactatttttattagccaccaagtgaa
acaaatatcattaaatgtgagcaactgtatcagggcactttcagtttcct
tgcctgtttgtggtccagaacaggctggagagagatgtgcaagcctagaa
ctggtcctgtccaccatcttcatgatgctagttgctcatgtcctaaagta
tttcagtcttttatttcgacctttcaaacatgtgctccatgaccttgacc
tacagatgtccccaaggacatgactgttctagttatcttttgccttgaac
cgaagccttaaaatgaacatagttgggaatgtgtctttccctgaagttct
ttcctgcttgaatacctatagatgccccagcaagattccccatacttccc
atttgaggagggcagtgccttgaaagtaattcaaatcattcctgttctct
cctcaccttctacaggtaatatactattctccactttcggcttcttccct
gtacctgttttgatttttttttaactaccaagttgcaaatgcattctctc
aggtgcattttcgaactcaaactcatttgactctgcttgtcattcaacag
tatagtatagtatagtataggtataggtataggtatagtatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6107786_6108889
seq2: B6Ng01-238E05.b_43_1143 (reverse)

seq1  TCTAG-TTACATAGAACTGTTGACATAGGAAATGCTTACCACTCTGAAAA  49
      ||||| ||||||||| ||| |||||||||||||||||| |||| ||||||
seq2  TCTAGTTTACATAGACCTGGTGACATAGGAAATGCTTAACACTTTGAAAA  50

seq1  TGACTAAATGATTTTACTCTATTAGATAAGATATTATGTAGCCATCAACA  99
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TGACTAAATGATTTTACTCTATTAGATAGGATATTATGTAGCCATC-ACA  99

seq1  GAATTTTTAA-GATATTTCTAATTACATACAAATGTAAGCTACAACATTC  148
      |||||||||| |||||| |||||||||||| |||||||||||| ||||||
seq2  GAATTTTTAAGGATATTCCTAATTACATAC-AATGTAAGCTAC-ACATTC  147

seq1  AGGACATCACATCCAGTAGGCAACCTCCTTACTGGTGAAATGCACTAGAT  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGACATCACATCCAGTAGGCAACCT-CTTACTGGTGAAATGCACTAGAT  196

seq1  AAATGTACTTGTAGTTTTGAATGGAGATTTCCTCTGAACATTCCAACATA  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAC-TGTAGTTTTGAATGGAGATTTCCTCTGAACATTCCAACATA  245

seq1  AAAACAAAAGATTTAGATACATACCCACCCTCAAGATGAGTAGTTGTTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAGATTTAGATACATACCCACCCTCAAGATGAGTAGTTGTTGT  295

seq1  TGGTAAGTGCAACTAACACATGCAATGGTTTTTGCTTCCATTTTTGCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTGCAACTAACACATGCAATGGTTTTTGCTTCCATTTTTGCCCA  345

seq1  TATTTTCCAACATTTCTCTAATAACCATTCATCATTTGCCAAAACAGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCAACATTTCTCTAATAACCATTCATCATTTGCCAAAACAGTCA  395

seq1  GTACACAATAGAGAGAGATTTGTGTGATGAAAGTAGTCTGGCTTGTCCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAATAGAGAGAGATTTGTGTGATGAAAGTAGTCTGGCTTGTCCTT  445

seq1  GTTCTTCTTTTCCATCTTCTCTAAAGGGATCCTGGTCTCTCTTCCTGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTTTTCCATCTTCTCTAAAGGGATCCTGGTCTCTCTTCCTGGGT  495

seq1  TTCTCATCTGCAGAGTATTTCAAGCCAGAGAGGACTGACTGGAGGCACGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTGCAGAGTATTTCAAGCCAGAGAGGACTGACTGGAGGCACGT  545

seq1  ACTCTGGATAGAGCTCAGAAGGGATGCTGAGAGCCTGACCTTTAAGAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGATAGAGCTCAGAAGGGATGCTGAGAGCCTGACCTTTAAGAAGA  595

seq1  ACGAAGTCCACTCAGGCGAGCGATCCTTTGTGATGTGTCTGTGAAGCCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGTCCACTCAGGCGAGCGATCCTTTGTGATGTGTCTGTGAAGCCCA  645

seq1  AGAAAACAAAGAACCCTATGTGGTTTGTTCATCTGAGTCATAGCACAGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAGAACCCTATGTGGTTTGTTCATCTGAGTCATAGCACAGAC  695

seq1  TGCTAAGGCCTCAAGATCATTTTTTAAACTCTTCAACTGGATGAAACTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGGCCTCAAGATCATTTTTTAAACTCTTCAACTGGATGAAACTTC  745

seq1  CCGATGAAGTAAGGAACCACACCCACACACATGGTTATCTGGTAAATTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGAAGTAAGGAACCACACCCACACACATGGTTATCTGGTAAATTGT  795

seq1  GTCCCTTCAATGTTCTTATCCGGAAATCTTTAGCTCCATTACCTCAGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCAATGTTCTTATCCGGAAATCTTTAGCTCCATTACCTCAGAAT  845

seq1  GTGGCTGTATTTGGAGTAAGCATTGTAAAGGGGGTTAGTGTAATATAAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTATTTGGAGTAAGCATTGTAAAGGGGGTTAGTGTAATATAAAG  895

seq1  TCATAAAGCATGAATCCATCCGCTGCTGTACTGATAAGAAGATGAGGTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGCATGAATCCATCCGCTGCTGTACTGATAAGAAGATGAGGTCA  945

seq1  GGACACAGGGAAAACCATAGGAGGATGTGGAGAACCTCAGAAGGTGGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGGGAAAACCATAGGAGGATGTGGAGAACCTCAGAAGGTGGCTG  995

seq1  TCTACACCCACTTCCCACTTGATGACTTGGGACTTCCCATTTTCAGAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACCCACTTCCCACTTGATGACTTGGGACTTCCCATTTTCAGAACT  1045

seq1  GTGAGATCATAGATTTCTGATGTTTAAGCCAATTATGGTGCTTTGGTATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCATAGATTTCTGATGTTTAAGCCAATTATGGTGCTTTGGTATA  1095

seq1  GAATTC  1104
      ||||||
seq2  GAATTC  1101


seq1: chr13_6025304_6026268
seq2: B6Ng01-238E05.g_143_1135

seq1  CATGCCCTGATGCACCTAGCTATAGAAGAGGTCCTTCTGAGAGGACGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTGATGCACCTAGCTATAGAAGAGGTCCTTCTGAGAGGACGATG  50

seq1  ACCACCTTACATGGGAGGTTGCCACATGATTGAGGTATGAGGCAAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTACATGGGAGGTTGCCACATGATTGAGGTATGAGGCAAACCAG  100

seq1  ACTGTGGCCACTTCTCAGAGGGTGTCAGGCTCACCAAGGCAATGATGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCCACTTCTCAGAGGGTGTCAGGCTCACCAAGGCAATGATGTGG  150

seq1  CCATCACTGACTGTCCGGCAAAACCTTCTGGCTGCAGGAAGAGAATAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTGACTGTCCGGCAAAACCTTCTGGCTGCAGGAAGAGAATAGGA  200

seq1  AAATCTGAAATGGAGAATAAAAAAAATTCAGTTAAAAAAATCACACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAAATGGAGAATAAAAAAAATTCAGTTAAAAAAATCACACCATA  250

seq1  AATACTAAGTCAAACTTACTATGCTACAACTGCATTTGGCTGTTTTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAAGTCAAACTTACTATGCTACAACTGCATTTGGCTGTTTTGGGC  300

seq1  ACAGACAGATCTTGATGAGATACATGCAAAAGCCAGGAAGAAGAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGATCTTGATGAGATACATGCAAAAGCCAGGAAGAAGAGACAGA  350

seq1  AAAGTCTACCAATGGCACCTTCATACTATTTTTATTAGCCACCAAGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTACCAATGGCACCTTCATACTATTTTTATTAGCCACCAAGTGAA  400

seq1  ACAAATATCATTAAATGTGAGCAACTGTATCAGGGCACTTTCAGTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCATTAAATGTGAGCAACTGTATCAGGGCACTTTCAGTTTCCT  450

seq1  TGCCTGTTTGTGGTCCAGAACAGGCTGGAGAGAGATGTGCAAGCCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTTGTGGTCCAGAACAGGCTGGAGAGAGATGTGCAAGCCTAGAA  500

seq1  CTGGTCCTGTCCACCATCTTCATGATGCTAGTTGCTCATGTCCTAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTGTCCACCATCTTCATGATGCTAGTTGCTCATGTCCTAAAGTA  550

seq1  TTTCAGTCTTTTATTTCGACCTTTCAAACATGTGCTCCATGACCTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCTTTTATTTCGACCTTTCAAACATGTGCTCCATGACCTTGACC  600

seq1  TACAGATGTCCCCAAGGACATGACTGTTCTAGTTATCTTTTGCCTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGTCCCCAAGGACATGACTGTTCTAGTTATCTTTTGCCTTGAAC  650

seq1  CGAAGCCTTAAAATGAACATAGTTGGGAATGTGTCTTTCCCTGAAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCTTAAAATGAACATAGTTGGGAATGTGTCTTTCCCTGAAGTTCT  700

seq1  TTCCTGCTTGAATACCTATAGATGCCCCAGCAAGATTCCCCATACTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTGAATACCTATAGATGCCCCAGCAAGATTCCCCATACTTCCC  750

seq1  ATTTGAGGAGGGCAGTGCCTTGAAAGTAATTCAAATCATTCCTGTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGAGGGCAGTGCCTTGAAAGTAATTCAAATCATTCCTGTTCTCT  800

seq1  CCTCACCTTCTACAGGTAATATACTATTCTCCACTTTC-GCTTCTTCCCT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTCACCTTCTACAGGTAATATACTATTCTCCACTTTCGGCTTCTTCCCT  850

seq1  GTACCTGTTTTGATTTTTTTTTTAACTACCAAGTTGCAAATGCATTCTCC  899
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  GTACCTGTTTTGA-TTTTTTTTTAACTACCAAGTTGCAAATGCATTCT-C  898

seq1  TCAGGTGCATTTTCGAACCTCAAACTCAATTGACTCTGCCTTGTCATTTA  949
      ||||||||||||||||| |||||||||| ||||||||| ||||||| || 
seq2  TCAGGTGCATTTTCGAA-CTCAAACTCATTTGACTCTG-CTTGTCA-TTC  945

seq1  AACAGGTATAGTATAG---------------------------------  965
      |||| |||||||||||                                 
seq2  AACA-GTATAGTATAGTATAGTATAGGTATAGGTATAGGTATAGTATAG  993


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