BAC Information

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BAC

Clone NameB6Ng01-238F19
Chromosome13 (Build37)
Map Location 65,840,001 - 65,882,350
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238F19.bB6Ng01-238F19.g
ACCGA049077GA049078
length1,1611,041
definitionB6Ng01-238F19.b B6Ng01-238F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,840,001 - 65,840,581)(65,881,802 - 65,882,350)
sequence
gaattctaccagactttcaaagaagagctaaagccaatactcttcaaact
attccatgaaatagaaacaaaaggagcactgccaaactcatgctatgagg
ccacagccactctgatacctaaaccacagaaagactcaacagaaagaaaa
ctttagattgatttcccttattaacattgattcaaaatactcaataaaac
acctgcaaaccgaatccaggaatacatcaaagatgtcatcgctcaagatc
aattcggcttcctcaaagagatgcttagaaatttaatatattgaaatcca
ccaatgtaatctaccatataaacaaacttaaagaaaaaactcacatgatt
tttctcattagttgctgaaaaggcctgggattaaatccatcgcctcttca
ttttaaaggtactagagaattcatggatacagggtacatacataaacata
atcacagtaacatacagtaagccaatagataaaaatcaaactaaatggag
aatttcaaacatttcctctccatttaggtataaggaacaagactaacctt
cccactctatccctatctatcttttgaaaatatcacttaaaattctagcc
agaaaaataagacaagaagatcaaagaaccagctcttggtttgattgatt
ctttgttcagttcttttagtttctacttgattgatttcagccctgagttt
gattatttcctgctgtctactctttttgagtgaatttgcttccttttctt
ctagagctttcagtgtgctgtcaagctgctagtgtatgctctctcccctt
tctttttggaggcactcagagctatgagttttccttttaggactgcgttt
attgtgtcccataaatttgggtgtacccattttcatttaaactctaaaaa
gtgattaattcatttcattattttcagtcataatggtgtacaaagttcat
gccagcgtttgaaagcagaggcaggcttcttacaggattgaggcctacaa
agtgtctcaagacaggcagggctgtttacacctaagtaaccatgtatgaa
agattaaaaataatttcagaaagaaaaaatactattatgaattagggttc
acgatggggaataaatcataaatttttatgttgtaaggaaaggcattttg
ggtaaggtatt
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcaacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaaagacgcaacaaaccagaatcttctgc
ggcaaagctttattgcttacatcttcaggagccagagtgcaagaagcaag
agagagagaaaacgaaaccctgtccctcttaaggagaattatccttcgcc
tcggacgtgtcactccctgattggctgcagcccatcggccgagttgacgt
cacggggaaggcagagtacaagtagtcacaaaatacccttggcacatgcg
cagattatttgtttaccacttagaacacagctgtcagcgccatcttgtaa
cggcgaatgtgggcgcggctcccaacaggcaaccttcccgggatgggaac
tggaaatagcagcgccacagcagcgccacagcagcgctgccagcgcctgc
cgcaactaggatcatgggggtccaggtgcagggacagagcactagtgcac
attcgcgcgtttggcggggcaggggtctgtgggacaggcagggaggcggg
gcagaacggcgagggcggcgaccctgagcgctccgcaggatcccagcgaa
aggcatggccatttggagagcataggggtcatgcggggtcacacccatgg
ctctgtcctccctcgggtctgtcctgccagtgccagggccctccctttct
agaccctcccacctctctcttccccctggggcttgggtcacacagctgtc
ttgggggcgggcgagggggcagggctggaggatggccagagttcacccaa
gtctcctggatggcatggtgatcccaggccctggcagcttataactaata
gcccacctatggtgatcccttacctatacttgggacctcaacctttagat
ctgacctgacatccatattgtaaccccaaccttttaaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65840001_65840581
seq2: B6Ng01-238F19.b_626_1206

seq1  TATCACTTAAAATTCTAGCCAGAAAAATAAGACAAGTAAAGAAGATCAAA  50
      |||||||||||||||||||||||||||||||||     ||||||||||||
seq2  TATCACTTAAAATTCTAGCCAGAAAAATAAGAC-----AAGAAGATCAAA  45

seq1  GAACCAGCTCTTGGTTTGATTGATTCTTTGTTCAGTTCTTTTAGTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGCTCTTGGTTTGATTGATTCTTTGTTCAGTTCTTTTAGTTTCTA  95

seq1  CTTGATTGATTTCAGCCCTGAGTTTGATTATTTCCTGCTGTCTACTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGATTTCAGCCCTGAGTTTGATTATTTCCTGCTGTCTACTCTTT  145

seq1  TTGAGTGAATTTGCTTCCTTTTGTTCTAGAGCTTTCAGGTGTGCTGGCAA  200
      |||||||||||||||||||||| |||||||||||||| |||||||| |||
seq2  TTGAGTGAATTTGCTTCCTTTTCTTCTAGAGCTTTCA-GTGTGCTGTCAA  194

seq1  GCTGCTAGTGTATGCTCTCTCCCCTTTCTTTTTGGAGGCACTCAGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAGTGTATGCTCTCTCCCCTTTCTTTTTGGAGGCACTCAGAGCTA  244

seq1  TGAGTTTTCCTTTTAGGACTGCGTTTATTGTGTCCCATAAATTTGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTCCTTTTAGGACTGCGTTTATTGTGTCCCATAAATTTGGGTGT  294

seq1  ACCCATTTTCA-TTAAACTCTAAAAAGTCATTAATTCATTTCTTTA-TTT  348
      ||||||||||| |||||||||||||||| ||||||||||||| ||| |||
seq2  ACCCATTTTCATTTAAACTCTAAAAAGTGATTAATTCATTTCATTATTTT  344

seq1  CAGTCATAATGGTGTACAAAGTTCATGCCAGCGTTTGAAAAGCAGAGGCA  398
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGTCATAATGGTGTACAAAGTTCATGCCAGCGTTTG-AAAGCAGAGGCA  393

seq1  GGC-TCTTACAGGATTGAGGCCTACAAAGTGTCTTCAAGACAGCCAGGGC  447
      ||| ||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GGCTTCTTACAGGATTGAGGCCTACAAAGTGTC-TCAAGACAGGCAGGGC  442

seq1  TGTTTACA-CTAAGTAACCATGTATGAAAAGAATAAAAATAAATTTAAGA  496
      |||||||| ||||||||||||||||| ||||| ||||||| ||||| |||
seq2  TGTTTACACCTAAGTAACCATGTATG-AAAGATTAAAAAT-AATTTCAGA  490

seq1  AAG-AAAAATACTATTATGAATTA-GGTTCACGAATGGGAATACATTCAT  544
      ||| |||||||||||||||||||| |||||||||  ||||||| | ||||
seq2  AAGAAAAAATACTATTATGAATTAGGGTTCACGATGGGGAATA-AATCAT  539

seq1  AAATTTTTATGTTGTAAG--AAAGCATTT--GGT-AGGTATT  581
      ||||||||||||||||||  || ||||||  ||| |||||||
seq2  AAATTTTTATGTTGTAAGGAAAGGCATTTTGGGTAAGGTATT  581

seq1: chr13_65881802_65882350
seq2: B6Ng01-238F19.g_547_1110 (reverse)

seq1  TGGGTTCAAAGGTTGGGGTTTACATAT-GATGTCAGGGTCAGGTCTAAA-  48
      |||||| |||||||||||||   |||| ||||||| |||||| |||||| 
seq2  TGGGTTAAAAGGTTGGGGTTACAATATGGATGTCA-GGTCAGATCTAAAG  49

seq1  GTTGGGGT-CCAAGTATAGGTAAGGGATCA-CATAGGT-GGCTATTGGTC  95
      |||| ||| ||||||||||||||||||||| ||||||| ||||||| || 
seq2  GTTGAGGTCCCAAGTATAGGTAAGGGATCACCATAGGTGGGCTATTAGTT  99

seq1  A-CTGCTGCCAGGGACTGGGATCACCATGCCATCCAGGAGACCTTGGGTG  144
      |   |||||||||| |||||||||||||||||||||||||| ||||||||
seq2  ATAAGCTGCCAGGGCCTGGGATCACCATGCCATCCAGGAGA-CTTGGGTG  148

seq1  AACTCTGGCCATCCTCCAGCCCTGCCCCCTCTCCCCGCCCCCAAGACAGC  194
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AACTCTGGCCATCCTCCAGCCCTGCCCCCTC-GCCCGCCCCCAAGACAGC  197

seq1  TGTGTGACCTAAGCCCCAGGGGGAATAGAGAGGTGGGAGGGTGT-TTAAG  243
      ||||||||| ||||||||||||||| |||||||||||||||| |   |||
seq2  TGTGTGACCCAAGCCCCAGGGGGAAGAGAGAGGTGGGAGGGTCTAGAAAG  247

seq1  GGAGGGCCCTGGCACTGGCAGGACAGACCCGAGGGAGGACACAGCCATGG  293
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAGGGCCCTGGCACTGGCAGGACAGACCCGAGGGAGGACAGAGCCATGG  297

seq1  GTGTGACCCTGCCTGACCCCTATACTCTCCAAATGGCTATGCCTTTTGCT  343
      ||||||||| || |||||||||| ||||||||||||| |||||||| |||
seq2  GTGTGACCCCGCATGACCCCTATGCTCTCCAAATGGCCATGCCTTTCGCT  347

seq1  GGGATCCTGCTGAGAGCTCAGGGTCGCTGCCCTCACCGTTCTGCCCCGCC  393
      |||||||||| ||| |||||||||||| |||||| |||||||||||||||
seq2  GGGATCCTGCGGAGCGCTCAGGGTCGCCGCCCTCGCCGTTCTGCCCCGCC  397

seq1  TCCCTGCCTGTCCCACAGACCCCCGCCATGCCACACGCGTGAACGTGCAC  443
      ||||||||||||||||||||||| |||  |||| ||||| ||| ||||||
seq2  TCCCTGCCTGTCCCACAGACCCCTGCCCCGCCAAACGCGCGAATGTGCAC  447

seq1  AAGTGCTCTGTCCCTGCACCTGGACCCCCATGATCCTAGTTGCAGCAGGC  493
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGTGCTCTGTCCCTGCACCTGGACCCCCATGATCCTAGTTGCGGCAGGC  497

seq1  GCTGGCA-----------GCGCTGGTGTGGCGCTGCTATTTCAAGTTCCC  532
      |||||||           |||||| ||||||||||||||||| |||||||
seq2  GCTGGCAGCGCTGCTGTGGCGCTGCTGTGGCGCTGCTATTTCCAGTTCCC  547

seq1  ATCCCGGGAAGGTTGCC  549
      |||||||||||||||||
seq2  ATCCCGGGAAGGTTGCC  564