BAC Information

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BAC

Clone NameB6Ng01-238P12
Chromosome13 (Build37)
Map Location 74,936,660 - 75,106,237
singlet/doubletdoublet
Overlap geneCast, EG544954
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, LOC622204
Downstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238P12.bB6Ng01-238P12.g
ACCGA049522GA049523
length1,1611,057
definitionB6Ng01-238P12.b B6Ng01-238P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,105,084 - 75,106,237)(74,936,660 - 74,937,708)
sequence
gaattccataaacagagaatcatcatgattctgctagcatatttcaaccc
acacaggaactagcttgaaatgtcatatgatagctgtgtttgaacagaat
ttgttcataagcagatatcaaatcttcagtcatattccaccaagaataca
ttgtgcttagaatatgtctttgttattaattaaatatctaatttttcttt
cttttaaatttattttatttactatttatacattcacaagtgttttttat
caaacccacctcattttccccctccaattccagagatccaaggattattc
ataggtttaatacttttacttgtgaatacattaccaataaattaagtatt
tgatgtctttgatttgacaagtttgttacagagtgtagttgtatagtcac
cattctggtccagtttcagaagtgttctgttgtctcaaattgtctccctt
tctgtcagtgtgagtgctcggactagcaagggccaagggcatatgctttg
gtactgaggacaggaaggaatttagcaatgtcaaagtctgagagacggag
atcaatagatgtgcattcacttcaatctttctacatcagactttaattat
atagatcatgcttaaggggggactatgagagtgcttcatctgagtctata
taataatccgtcatttcataagcttttctttgatgtatggaactgaaaca
tccaattggattttatctgtggttatgcagctctcaaatacatgtgagtc
atatgttcccaggatctaaataatctcttataaattagaatgaacccacg
tcatgtagctatgcagagaatacaaagaaaataagttttaaaatcttttt
ttaactgaaaccccatagtagttatgattcttataacaattagagatgag
agacgctgctgaaaacgtgggttactttttgaccttaaggaaagaaaggc
tggatctggtggatattttcctcactggattggctagaagtctctcaagg
gtttccctgtccttgacctttttctgcataaaccttcgagtacaaatttc
acatcaggaatgtgcctaagcatctaccagtataaaaaccatttacatct
gcctacattcccatccagtagttgataagcattacgggtcaaggcctgat
ggcagtcccga
gaattctcttagagttcttccattcaatatttaccaacacagaatgataa
agtatgaaggaaaatccatgcatacaactgttcctatttatgtttttaca
ttttaattcatgaatagaaccggttttttttctagaaaataatgattgcc
tagacaagatagatataagttttttagtaatttatttatttatgtgcatc
agtgttttatctgcatgcatgactgtgtgaggttgtcatatcctctggaa
ctggagttacagttgtgagctgccatgtgagtgctggggactgaacctgg
tctctggaagagcagtcactgctctaaaactgctgagcagatatataagt
attcttatgaggaacactgatcttcaagaagttcatatgctcatttgcct
tgacaataaggtaaaataagtctattcaatttcctctatcgatcatcttc
ttgagaaagataatatttttatgatctttggaagaggaaacaaaggatta
ttaatttcttacatactgtgagaaatggtagacactgggaaaataagaca
agggagtcaaatataaaacaaatgatagttctctgttggtttcaatcctc
actatccttattgaaaccaaactattagggctaaagatagctccacggct
aagagcactggctgctcttccagagggtattggcttggttaccagtgtcc
acatggtagcctacaatcatccctaactccagtttaaggggaaatccctc
ttctgtcctccttgagcaccagccttatacttggggcatagacatacaga
taaaaacacttatacaccataaaataataaaataaaaaattaaccaagtt
tgaaagtaaataattgtattttcctagggcaaaaatcattaacatggatg
gtgtaggcaagttatattaaaaataaagaaagagtaatattagtgggtaa
tagtataattttgtattggtcaaacaaggtattttatgctctatttaata
ctgaaaaaatgatctatggtatttttggatggaaaaataaagtgaatagc
catttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_75105084_75106237
seq2: B6Ng01-238P12.b_51_1211 (reverse)

seq1  TCGGGACTGCATCCAGGCTTTTGGCCCGTCATGCTTATC-ACTACTGGA-  48
      ||||||||||   |||||  ||| ||||| ||||||||| ||||||||| 
seq2  TCGGGACTGCCATCAGGC-CTTGACCCGTAATGCTTATCAACTACTGGAT  49

seq1  GTGGATGTA-GCAGATGTTAATGGTTTTTATAATTGGTAGAATGCTTA-G  96
      | | ||||| |||||||| |||||||||||| | |||||| ||||||| |
seq2  GGGAATGTAGGCAGATGTAAATGGTTTTTAT-ACTGGTAG-ATGCTTAGG  97

seq1  CACATTCTTGGATGTGAAATTTGTACTCG-AGGTTTATG-AG-AAAAGGT  143
      ||||||| | ||||||||||||||||||| ||||||||| || |||||||
seq2  CACATTCCT-GATGTGAAATTTGTACTCGAAGGTTTATGCAGAAAAAGGT  146

seq1  CAAGGACAGGGAA--CCCTGAGAGACTTCTAGCCAATTCCAGTGAGGAAA  191
      |||||||||||||  || |||||||||||||||||| |||||||||||||
seq2  CAAGGACAGGGAAACCCTTGAGAGACTTCTAGCCAA-TCCAGTGAGGAAA  195

seq1  ATATCCA-CAGATCCAGCC-TTCTTTCCTT-AGGTCAAAAAGTAACCACC  238
      ||||||| ||||||||||| |||||||||| ||||||||||||||||  |
seq2  ATATCCACCAGATCCAGCCTTTCTTTCCTTAAGGTCAAAAAGTAACCCAC  245

seq1  GTTTTCAGCAGCGTCTCTCATCTCTAATTGTTATAAGAATCATAACTACT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGCAGCGTCTCTCATCTCTAATTGTTATAAGAATCATAACTACT  295

seq1  ATGGGGTTTCAGTTAAAAAAAGATTTTAAAACTTATTTTCTTTGTATTCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTTCAGTTAAAAAAAGATTTTAAAACTTATTTTCTTTGTATTCT  345

seq1  CTGCATAGCTACATGACGTGGGTTCATTCTAATTTATAAGAGATTATTTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGCTACATGACGTGGGTTCATTCTAATTTATAAGAGATTATTTA  395

seq1  GATCCTGGGAACATATGACTCACATGTATTTGAGAGCTGCATAACCACAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGGAACATATGACTCACATGTATTTGAGAGCTGCATAACCACAG  445

seq1  ATAAAATCCAATTGGATGTTTCAGTTCCATACATCAAAGAAAAGCTTATG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCCAATTGGATGTTTCAGTTCCATACATCAAAGAAAAGCTTATG  495

seq1  AAATGACGGATTATTATATAGACTCAGATGAAGCACTCTCATAGTCCCCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACGGATTATTATATAGACTCAGATGAAGCACTCTCATAGTCCCCC  545

seq1  CTTAAGCATGATCTATATAATTAAAGTCTGATGTAGAAAGATTGAAGTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCATGATCTATATAATTAAAGTCTGATGTAGAAAGATTGAAGTGA  595

seq1  ATGCACATCTATTGATCTCCGTCTCTCAGACTTTGACATTGCTAAATTCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATCTATTGATCTCCGTCTCTCAGACTTTGACATTGCTAAATTCC  645

seq1  TTCCTGTCCTCAGTACCAAAGCATATGCCCTTGGCCCTTGCTAGTCCGAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCCTCAGTACCAAAGCATATGCCCTTGGCCCTTGCTAGTCCGAG  695

seq1  CACTCACACTGACAGAAAGGGAGACAATTTGAGACAACAGAACACTTCTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACTGACAGAAAGGGAGACAATTTGAGACAACAGAACACTTCTG  745

seq1  AAACTGGACCAGAATGGTGACTATACAACTACACTCTGTAACAAACTTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGACCAGAATGGTGACTATACAACTACACTCTGTAACAAACTTGT  795

seq1  CAAATCAAAGACATCAAATACTTAATTTATTGGTAATGTATTCACAAGTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAAGACATCAAATACTTAATTTATTGGTAATGTATTCACAAGTA  845

seq1  AAAGTATTAAACCTATGAATAATCCTTGGATCTCTGGAATTGGAGGGGGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTAAACCTATGAATAATCCTTGGATCTCTGGAATTGGAGGGGGA  895

seq1  AAATGAGGTGGGTTTGATAAAAAACACTTGTGAATGTATAAATAGTAAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGTGGGTTTGATAAAAAACACTTGTGAATGTATAAATAGTAAAT  945

seq1  AAAATAAATTTAAAAGAAAGAAAAATTAGATATTTAATTAATAACAAAGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATTTAAAAGAAAGAAAAATTAGATATTTAATTAATAACAAAGA  995

seq1  CATATTCTAAGCACAATGTATTCTTGGTGGAATATGACTGAAGATTTGAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTAAGCACAATGTATTCTTGGTGGAATATGACTGAAGATTTGAT  1045

seq1  ATCTGCTTATGAACAAATTCTGTTCAAACACAGCTATCATATGACATTTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTATGAACAAATTCTGTTCAAACACAGCTATCATATGACATTTC  1095

seq1  AAGCTAGTTCCTGTGTGGGTTGAAATATGCTAGCAGAATCATGATGATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTTCCTGTGTGGGTTGAAATATGCTAGCAGAATCATGATGATTC  1145

seq1  TCTGTTTATGGAATTC  1154
      ||||||||||||||||
seq2  TCTGTTTATGGAATTC  1161

seq1: chr13_74936660_74937708
seq2: B6Ng01-238P12.g_72_1128

seq1  GAATTCTCTTAGAGTTCTTCCATTCAATATTTACCAACACAGAATGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGAGTTCTTCCATTCAATATTTACCAACACAGAATGATAA  50

seq1  AGTATGAAGGAAAATCCATGCATACAACTGTTCCTATTTATGTTTTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAGGAAAATCCATGCATACAACTGTTCCTATTTATGTTTTTACA  100

seq1  TTTTAATTCATGAATAGAACCGGTTTTTTTTCTAGAAAATAATGATTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCATGAATAGAACCGGTTTTTTTTCTAGAAAATAATGATTGCC  150

seq1  TAGACAAGATAGATATAAGTTTTTTAGTAATTTATTTATTTATGTGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGATAGATATAAGTTTTTTAGTAATTTATTTATTTATGTGCATC  200

seq1  AGTGTTTTATCTGCATGCATGACTGTGTGAGGTTGTCATATCCTCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTATCTGCATGCATGACTGTGTGAGGTTGTCATATCCTCTGGAA  250

seq1  CTGGAGTTACAGTTGTGAGCTGCCATGTGAGTGCTGGGGACTGAACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTACAGTTGTGAGCTGCCATGTGAGTGCTGGGGACTGAACCTGG  300

seq1  TCTCTGGAAGAGCAGTCACTGCTCTAAAACTGCTGAGCAGATATATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAGAGCAGTCACTGCTCTAAAACTGCTGAGCAGATATATAAGT  350

seq1  ATTCTTATGAGGAACACTGATCTTCAAGAAGTTCATATGCTCATTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATGAGGAACACTGATCTTCAAGAAGTTCATATGCTCATTTGCCT  400

seq1  TGACAATAAGGTAAAATAAGTCTATTCAATTTCCTCTATCGATCATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAAGGTAAAATAAGTCTATTCAATTTCCTCTATCGATCATCTTC  450

seq1  TTGAGAAAGATAATATTTTTATGATCTTTGGAAGAGGAAACAAAGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGATAATATTTTTATGATCTTTGGAAGAGGAAACAAAGGATTA  500

seq1  TTAATTTCTTACATACTGTGAGAAATGGTAGACACTGGGAAAATAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTACATACTGTGAGAAATGGTAGACACTGGGAAAATAAGACA  550

seq1  AGGGAGTCAAATATAAAACAAATGATAGTTCTCTGTTGGTTTCAATCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCAAATATAAAACAAATGATAGTTCTCTGTTGGTTTCAATCCTC  600

seq1  ACTATCCTTATTGAAACCAAACTATTAGGGCTAAAGATAGCTCCACGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTTATTGAAACCAAACTATTAGGGCTAAAGATAGCTCCACGGCT  650

seq1  AAGAGCACTGGCTGCTCTTCCAGAGGGTATTGGCTTGGTTACCAGTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGGCTGCTCTTCCAGAGGGTATTGGCTTGGTTACCAGTGTCC  700

seq1  ACATGGTAGCCTACAATCATCCCTAACTCCAGTTTAAGGGGAAATCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGCCTACAATCATCCCTAACTCCAGTTTAAGGGGAAATCCCTC  750

seq1  TTCTGTCCTCCTTGAGCACCAGCCTTATACTTGGGGCATAGACATACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCTCCTTGAGCACCAGCCTTATACTTGGGGCATAGACATACAGA  800

seq1  T-AAAACACTTATACA-CATAAAATAATAAAATAAAAAATTAACCAAGTT  848
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAAACACTTATACACCATAAAATAATAAAATAAAAAATTAACCAAGTT  850

seq1  TGAAAGT-AATAATTGTATTTT-CTAGGGCAAAAATCA-TAACATGGAT-  894
      ||||||| |||||||||||||| ||||||||||||||| |||||||||| 
seq2  TGAAAGTAAATAATTGTATTTTCCTAGGGCAAAAATCATTAACATGGATG  900

seq1  GTGTAGGCAAGTTATAT--AAAATAA--GAAGAGTAATATTAGT-GGTAA  939
      |||||||||||||||||  |||||||   ||||||||||||||| |||||
seq2  GTGTAGGCAAGTTATATTAAAAATAAAGAAAGAGTAATATTAGTGGGTAA  950

seq1  TAGTAATAATTTTGTATT-GTC-AACAAGGTATTTTATGCCTCTTATTTA  987
      |||| ||||||||||||| ||| |||||||||||||||| ||| ||||||
seq2  TAGT-ATAATTTTGTATTGGTCAAACAAGGTATTTTATG-CTC-TATTTA  997

seq1  ATACTGAAAAAATGATCTATGTAATTTTTTGAATGAGAAAATAAAGTATA  1037
      |||||||||||||||||||||  | |||||| |||  ||||||||||  |
seq2  ATACTGAAAAAATGATCTATGGTA-TTTTTGGATGGAAAAATAAAGT-GA  1045

seq1  ATAGCAATTTGG  1049
      ||||| ||||||
seq2  ATAGCCATTTGG  1057