BAC Information

Click to search

BAC

Clone NameB6Ng01-238P21
Chromosome13 (Build37)
Map Location 58,280,465 - 58,451,853
singlet/doubletdoublet
Overlap geneUbqln1, LOC671252, Gkap1, Kif27
Upstream geneLOC100040995, Spock1, Klhl3, Hnrpa0, 5133401N09Rik
Downstream geneHnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238P21.bB6Ng01-238P21.g
ACCGA049540GA049541
length1,0411,102
definitionB6Ng01-238P21.b B6Ng01-238P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,450,825 - 58,451,853)(58,280,465 - 58,281,566)
sequence
gaattccacgacattaggggattttccctttattttttggttgtgccaga
gccctagaatgttgcattatatatagtaaatactaaacatattgctaagt
ggatacattctgcataagggatacctgtgaactatatgcatggtgtgtgc
atagtaagtgcacacgcacacgtatcttttcatgtctgtgcaagcacatg
cagaggctagaggaagatgttggatgtcctgctgtgtcactctcaactct
gttccactgagacagggtctctccctgaatctggagctagtggactggtg
actatccaacctgggatgctcctggctttccctctggagttacagatgcc
cttgtgccatgcttgactttttgcatggttgtggagctctcacctcaggt
ccttctgctgtacacagagagctcttacccggtgagccatgatcccagcc
tgttgcctctggattttatagttgtgtggtctagccctggctaagtacaa
ttaataatatactttttgagatgctgtcttgctatgcaaccctggctgga
acttagtatgtaggacactctgtggcacatgcctctctgtgacagcacac
tctgtggttcatgactctgtgacagcacactctgtggcacatgcctctct
gtgacagcacactctgtggcacatgcctctctctgacagcacactctgtg
gcacatgcctctctgtgacagcacactctgtggcacatgcctctgtgaca
gcacactctgtggcacatgcctctctgtgacagcacactctgtggcacat
gcctctctgtgacagcacacttctgtggtacatgcctctcttgtgacagc
acactctgtggcacatgccttctctctgacagcacactctgtgggcacat
gccttcttctgtagacagcacaacttctgtggcacatgccctctctgtga
cagcacactctgtggcacatgccctctctgtgacagcacactctgtggca
acatgcctctctgtgacagcacactctgttgcacatgcctc

gaattctttcctttgttatgtgctatagcaacaaaatttgtttttagatt
tattatccttgaatgtgcttttcatctgaaaatttgaaaaggagagcaag
gtgggtagagaaacgcatcgtcacctgaggattcacccccgcaagggcct
gcagcatctgctggataaactgctggtggcctggctcagcagtgccccct
tgggggttcgtatcttcactaggtgcagtgctaggtgcattggttccgga
agagcctccagaattgcctgctgccaagccaggagtaaacctagggaaag
cacaggcaaccccatcaggtcacaccttaacataatagtagttagcttat
tttcttaaaaacaagcagatgtaactttgaaaagtgactaaaaacaactc
aataaccaaaataaaaggcagaatgatattctcagagaaatgcgcctacc
ctgggatgaggccaggagcttctgtggccagcgtctgcaagccctgctgg
atctgcagcagcgcctgcatggctctaggattcgacatcgctgagagcgt
gtcggggttctgcatctgaggaggaaggaagcccagcggttaccaaagaa
cagaaagcaaggcaggcacatatttccaactctgcaacatttcgaagaaa
atctaaaaccttttacacccagacaccatatttcttcccaagaagaaacc
ctcctcctctctgacagcaaattccatacacaaaccattactcgacttac
tagcaagcctgccataaaagctgtttccagagtgaagacaaggaggagct
atcccagaagccacatagcccctttctccaacagaagaaaaaacaatttt
ctacgcaattccaaatgcaaatttattagatgggtggtaacctgatgacc
ttgtctgtctactgctattctaacaatcttaggagtcgccatctgaaaca
accattgcaaacctgaaatcaatgcatcgctcctagttagcttctggctt
tcaatcccatacctgaacagaacaaggagtttctactgtgcagtagacaa
ggacagtcactaacgtggtgatgacttgcttggcagggaagcgtctacca
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58450825_58451853
seq2: B6Ng01-238P21.b_46_1086 (reverse)

seq1  GAGGCATGTGCCACAGAGTGTGCTGTCACAGAGAGGCATG-TGCCACAGA  49
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GAGGCATGTGCAACAGAGTGTGCTGTCACAGAGAGGCATGTTGCCACAGA  50

seq1  GTGTGCTGTCACAGAGA-GGCATGTGCCACAGAGTGTGCTGTCACAGAGA  98
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGTGCTGTCACAGAGAGGGCATGTGCCACAGAGTGTGCTGTCACAGAGA  100

seq1  -GGCATGTGCCACAGA--GTGTGCTGTC-ACAGA--GAGGCATGTG-CCA  141
       |||||||||||||||   ||||||||| |||||   ||||||||| |||
seq2  GGGCATGTGCCACAGAAGTTGTGCTGTCTACAGAAGAAGGCATGTGCCCA  150

seq1  CAGAGTGTGCTGTCAGAGAG-AGGCATGTGCCACAGAGTGTGCTGTCAC-  189
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  CAGAGTGTGCTGTCAGAGAGAAGGCATGTGCCACAGAGTGTGCTGTCACA  200

seq1  AGAGAGGCATGTACCACAG-AGTGTGCTGTCACAGAGAGGCATGTGCCAC  238
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGAGAGGCATGTACCACAGAAGTGTGCTGTCACAGAGAGGCATGTGCCAC  250

seq1  AGAGTGTGCTGTCACAGAGAGGCATGTGCCACAGAGTGTGCTGTCACAGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGCTGTCACAGAGAGGCATGTGCCACAGAGTGTGCTGTCACAGA  300

seq1  GGCATGTGCCACAGAGTGTGCTGTCACAGAGAGGCATGTGCCACAGAGTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGCCACAGAGTGTGCTGTCACAGAGAGGCATGTGCCACAGAGTG  350

seq1  TGCTGTCAGAGAGAGGCATGTGCCACAGAGTGTGCTGTCACAGAGAGGCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAGAGAGAGGCATGTGCCACAGAGTGTGCTGTCACAGAGAGGCA  400

seq1  TGTGCCACAGAGTGTGCTGTCACAGAGTCATGAACCACAGAGTGTGCTGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACAGAGTGTGCTGTCACAGAGTCATGAACCACAGAGTGTGCTGT  450

seq1  CACAGAGAGGCATGTGCCACAGAGTGTCCTACATACTAAGTTCCAGCCAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAGGCATGTGCCACAGAGTGTCCTACATACTAAGTTCCAGCCAG  500

seq1  GGTTGCATAGCAAGACAGCATCTCAAAAAGTATATTATTAATTGTACTTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATAGCAAGACAGCATCTCAAAAAGTATATTATTAATTGTACTTA  550

seq1  GCCAGGGCTAGACCACACAACTATAAAATCCAGAGGCAACAGGCTGGGAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTAGACCACACAACTATAAAATCCAGAGGCAACAGGCTGGGAT  600

seq1  CATGGCTCACCGGGTAAGAGCTCTCTGTGTACAGCAGAAGGACCTGAGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTCACCGGGTAAGAGCTCTCTGTGTACAGCAGAAGGACCTGAGGT  650

seq1  GAGAGCTCCACAACCATGCAAAAAGTCAAGCATGGCACAAGGGCATCTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCCACAACCATGCAAAAAGTCAAGCATGGCACAAGGGCATCTGT  700

seq1  AACTCCAGAGGGAAAGCCAGGAGCATCCCAGGTTGGATAGTCACCAGTCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGAGGGAAAGCCAGGAGCATCCCAGGTTGGATAGTCACCAGTCC  750

seq1  ACTAGCTCCAGATTCAGGGAGAGACCCTGTCTCAGTGGAACAGAGTTGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTCCAGATTCAGGGAGAGACCCTGTCTCAGTGGAACAGAGTTGAG  800

seq1  AGTGACACAGCAGGACATCCAACATCTTCCTCTAGCCTCTGCATGTGCTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACAGCAGGACATCCAACATCTTCCTCTAGCCTCTGCATGTGCTT  850

seq1  GCACAGACATGAAAAGATACGTGTGCGTGTGCACTTACTATGCACACACC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACATGAAAAGATACGTGTGCGTGTGCACTTACTATGCACACACC  900

seq1  ATGCATATAGTTCACAGGTATCCCTTATGCAGAATGTATCCACTTAGCAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAGTTCACAGGTATCCCTTATGCAGAATGTATCCACTTAGCAA  950

seq1  TATGTTTAGTATTTACTATATATAATGCAACATTCTAGGGCTCTGGCACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGTATTTACTATATATAATGCAACATTCTAGGGCTCTGGCACA  1000

seq1  ACCAAAAAATAAAGGGAAAATCCCCTAATGTCGTGGAATTC  1029
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAATAAAGGGAAAATCCCCTAATGTCGTGGAATTC  1041


seq1: chr13_58280465_58281566
seq2: B6Ng01-238P21.g_68_1169

seq1  GAATTCTTTCCTTTGTTATGTGCTATAGCAACAAAATTTGTTTTTAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTTGTTATGTGCTATAGCAACAAAATTTGTTTTTAGATT  50

seq1  TATTATCCTTGAATGTGCTTTTCATCTGAAAATTTGAAAAGGAGAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTTGAATGTGCTTTTCATCTGAAAATTTGAAAAGGAGAGCAAG  100

seq1  GTGGGTAGAGAAACGCATCGTCACCTGAGGATTCACCCCCGCAAGGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGAGAAACGCATCGTCACCTGAGGATTCACCCCCGCAAGGGCCT  150

seq1  GCAGCATCTGCTGGATAAACTGCTGGTGGCCTGGCTCAGCAGTGCCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCTGCTGGATAAACTGCTGGTGGCCTGGCTCAGCAGTGCCCCCT  200

seq1  TGGGGGTTCGTATCTTCACTAGGTGCAGTGCTAGGTGCATTGGTTCCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTCGTATCTTCACTAGGTGCAGTGCTAGGTGCATTGGTTCCGGA  250

seq1  AGAGCCTCCAGAATTGCCTGCTGCCAAGCCAGGAGTAAACCTAGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCCAGAATTGCCTGCTGCCAAGCCAGGAGTAAACCTAGGGAAAG  300

seq1  CACAGGCAACCCCATCAGGTCACACCTTAACATAATAGTAGTTAGCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAACCCCATCAGGTCACACCTTAACATAATAGTAGTTAGCTTAT  350

seq1  TTTCTTAAAAACAAGCAGATGTAACTTTGAAAAGTGACTAAAAACAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAAAACAAGCAGATGTAACTTTGAAAAGTGACTAAAAACAACTC  400

seq1  AATAACCAAAATAAAAGGCAGAATGATATTCTCAGAGAAATGCGCCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAAAATAAAAGGCAGAATGATATTCTCAGAGAAATGCGCCTACC  450

seq1  CTGGGATGAGGCCAGGAGCTTCTGTGGCCAGCGTCTGCAAGCCCTGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGAGGCCAGGAGCTTCTGTGGCCAGCGTCTGCAAGCCCTGCTGG  500

seq1  ATCTGCAGCAGCGCCTGCATGGCTCTAGGATTCGACATCGCTGAGAGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGCAGCGCCTGCATGGCTCTAGGATTCGACATCGCTGAGAGCGT  550

seq1  GTCGGGGTTCTGCATCTGAGGAGGAAGGAAGCCCAGCGGTTACCAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGGTTCTGCATCTGAGGAGGAAGGAAGCCCAGCGGTTACCAAAGAA  600

seq1  CAGAAAGCAAGGCAGGCACATATTTCCAACTCTGCAACATTTCGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCAAGGCAGGCACATATTTCCAACTCTGCAACATTTCGAAGAAA  650

seq1  ATCTAAAACCTTTTACACCCAGACACCATATTTCTTCCCAAGAAGAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAACCTTTTACACCCAGACACCATATTTCTTCCCAAGAAGAAACC  700

seq1  CTCCTCCTCTCTGACAGCAAATTCCATACACAAACCATTACTCGACTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCTCTGACAGCAAATTCCATACACAAACCATTACTCGACTTAC  750

seq1  TAGCAAGCCTGCCATAAAAGCTGTTTCCAGAGTGAAGACAAGGAGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCCTGCCATAAAAGCTGTTTCCAGAGTGAAGACAAGGAGGAGCT  800

seq1  ATCCCAGAAGCCACATAGCCCCTTTCTCCAACAGAAGAAAAA--CATTTT  848
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ATCCCAGAAGCCACATAGCCCCTTTCTCCAACAGAAGAAAAAACAATTTT  850

seq1  CTACGCAATTCCAAATGCAAATTTATTAGAT-GGTGGTAACCTGATGACC  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTACGCAATTCCAAATGCAAATTTATTAGATGGGTGGTAACCTGATGACC  900

seq1  TTGTCTTGTCTACTGCTATTCTAACAATCTTAGGAGTCGCCATCTGAAAC  947
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTC-TGTCTACTGCTATTCTAACAATCTTAGGAGTCGCCATCTGAAAC  949

seq1  AACCATTGCAAACCTGAAATCAATGCATCGCTCCTAGTTTAGCTTCTTGG  997
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  AACCATTGCAAACCTGAAATCAATGCATCGCTCCTAG-TTAGCTTC-TGG  997

seq1  CTTTCAAATCCCCATACCTG-ACAG-ACAAGGAGTTTCTACTGTGCAGTA  1045
      |||||||   |||||||||| |||| ||||||||||||||||||||||||
seq2  CTTTCAA--TCCCATACCTGAACAGAACAAGGAGTTTCTACTGTGCAGTA  1045

seq1  GACCAAGGACAGTCACTAACCGTGGTGATGACTTGC-TGGCAGGG-AGCG  1093
      || |||||||||||||||| |||||||||||||||| |||||||| ||||
seq2  GA-CAAGGACAGTCACTAA-CGTGGTGATGACTTGCTTGGCAGGGAAGCG  1093

seq1  TCTACCACT  1102
      |||||||||
seq2  TCTACCACT  1102


| Home | SequenceCutter | Blast | Download |