BAC Information

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BAC

Clone NameB6Ng01-239A09
Chromosome13 (Build37)
Map Location 89,610,081 - 89,797,960
singlet/doubletdoublet
Overlap geneHapln1, EG667266, Vcan
Upstream geneLOC667230, EG435375, Edil3
Downstream geneLOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239A09.bB6Ng01-239A09.g
ACCGA049560GA049561
length1,1581,098
definitionB6Ng01-239A09.b B6Ng01-239A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,796,814 - 89,797,960)(89,610,081 - 89,611,185)
sequence
gaattcaaaaccagcctgggctatatgacactctatctcaaacaactgac
aggcagaaagatagacagacagtcctgaggcaagaacattgtccactctt
ctctgttttagtatagaatatgtaggaccaggtaacattttatttatacc
tcgaagtgtatgtctatatttcaagtcaatggtgttaaagattattctgc
ttttgctttgttttttttttttttttttgtggctttttttttttttctgg
gaagtgatagtgagagtttactattggaaatacatcattgctccaactca
agatggttaataaaagatgagagataataaggacgagaatattaataggc
tgctcactgatgttaggtgctttttactctggagatattttttaaaagtg
actttgtagatggccatttagtgatatttcattttaatacaaatacaact
caaaatgacatgatctgagataaaaatgtacatccagagcctcaatctaa
acatttaaaattattttcattctaaagttcgatatcaatgccttttacaa
aggtatatgattgaggctctgaggtgttacagtaaagaaatagagcaaga
ttaattctgatgcttgcactagttgaaatgcttagatttcttgaaaataa
cgcaatttgctttttcttagttgcttgcggccaaccccctgttgtagaaa
atgccaagacctttggaaagatgaaaccacgctatgaaatcaactccttg
attagatatcactgcaaagatggtttcattcagcgacaccttccaactat
ccggtgcctaggaaacgggagatgggcaatgcctaaaataacctgcatga
accgtaagtggtcctttagaaagaacggacagcgttgctttaacagatac
tagacacctacattttaccgctgtggtatccgtagtttagggtatggagc
aagtaatactgttgggtttcttctttctttgtttcttccattgtagcatc
tgcataccaaaggacttattctaggaaatacctaaaaaattcctccatcc
gcaaagggacaatttctattaaatacatcaaacattgagcatccgcttgg
agccggaaggcggcagggaaccaaggcgcctgaattcttttaaattggcg
aacatgtg
gaattcagagcagcaccaatatgtaagaaaccttccctagaccaagagaa
actaaagaatatttccttgagtttctgcaagataggagaaagtacctgtc
cttttagccagactacagtattgcatgattggccagcatgaagtaggaca
cccaagacagccttcactcattactgagaaataattaataataaaacaca
agttgagttctacctggtaaatcttaaaaagcaataactaaaaatatcta
tcccaaactgaatatatttataagctcagcttgagcagaactggtgatgt
gaaacttataattttggtctgcccaccaagattagtagatactcagagga
ccataaaaattcaaggagtagaaaaccaatcagttgtatctgatttaggt
ataggtgttatccttcaaggaatataaatgaatgttagaactgtatccca
cacatacaaaatatcctcttggaagataacaataactatataaaactatc
tgaaaatatcactgcttagaagactgaacatttctccattgcatgcaaaa
tgaccagagcaaaggtaataatagagatgaaacaggaaggagttgatgaa
agacttaaagagagaactttgagcatccatcagccaactatgacacttat
gaccagttgcccccaacttacagtgcagcagtcagagcctccttgccaag
agactttatccctcaaacagggagccaaagtaacccctcttttctttaaa
tgaatgcatgaagccataataccaacagtgaatctttgaaaatatcaaaa
attgactgataccttggtaaaccaatgagaaaagttaatgaaaaatttag
taacatcagtcccacagaggtaatatcacaagagattctgtcaaaaataa
tatggtaattttaccaatggacttgtgccaactcacatattataatcaat
gaccatttaggttttttttctctttttttttattaggtattttcctcgtt
tacatttcatgctatcccaaaagtccccatacccaccaaccccattccct
acccacccaacttcccctttggcccttgcgttcttctgttaagagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89796814_89797960
seq2: B6Ng01-239A09.b_46_1203 (reverse)

seq1  CACATGTTCGCCATTTT--AAGGA-TCA-GCGCC-TGGTTTCCTGCCGCC  45
      ||||||||||||| |||  ||| | ||| ||||| ||||| |||||||||
seq2  CACATGTTCGCCAATTTAAAAGAATTCAGGCGCCTTGGTTCCCTGCCGCC  50

seq1  -TCCGGCTCC-AGC-GATGCTCATGTTTTGATGTATTT-ATAG-AATTGT  90
       ||||||||| ||| ||||||||   |||||||||||| |||| ||||||
seq2  TTCCGGCTCCAAGCGGATGCTCAATGTTTGATGTATTTAATAGAAATTGT  100

seq1  -CCTTTGCGGAT-GAGGAATTTTTTAAGTATTTCTTAGAATAAGTCCTTT  138
       ||||||||||| ||||||||||||| ||||||| |||||||||||||||
seq2  CCCTTTGCGGATGGAGGAATTTTTTAGGTATTTCCTAGAATAAGTCCTTT  150

seq1  GGTATGCAGATGCTAC-ATGGAAGAAAACAAAGAAAGAAGAAAACACAAC  187
      |||||||||||||||| ||||||| ||||||||||||||| |||| ||||
seq2  GGTATGCAGATGCTACAATGGAAG-AAACAAAGAAAGAAG-AAACCCAAC  198

seq1  AGTATTACTTGCTCCATACCCTAAACTACGGATACCACAGCGGTAAAATG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTACTTGCTCCATACCCTAAACTACGGATACCACAGCGGTAAAATG  248

seq1  TAGGTGTCTAGTATCTGTTAAAGCAACGCTGTCCGTTCTTTCTAAAGGAC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTCTAGTATCTGTTAAAGCAACGCTGTCCGTTCTTTCTAAAGGAC  298

seq1  CACTTACGGTTCATGCAGGTTATTTTAGGCATTGCCCATCTCCCGTTTCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACGGTTCATGCAGGTTATTTTAGGCATTGCCCATCTCCCGTTTCC  348

seq1  TAGGCACCGGATAGTTGGAAGGTGTCGCTGAATGAAACCATCTTTGCAGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACCGGATAGTTGGAAGGTGTCGCTGAATGAAACCATCTTTGCAGT  398

seq1  GATATCTAATCAAGGAGTTGATTTCATAGCGTGGTTTCATCTTTCCAAAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAATCAAGGAGTTGATTTCATAGCGTGGTTTCATCTTTCCAAAG  448

seq1  GTCTTGGCATTTTCTACAACAGGGGGTTGGCCGCAAGCAACTAAGAAAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGCATTTTCTACAACAGGGGGTTGGCCGCAAGCAACTAAGAAAAA  498

seq1  GCAAATTGCGTTATTTTCAAGAAATCTAAGCATTTCAACTAGTGCAAGCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGCGTTATTTTCAAGAAATCTAAGCATTTCAACTAGTGCAAGCA  548

seq1  TCAGAATTAATCTTGCTCTATTTCTTTACTGTAACACCTCAGAGCCTCAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTAATCTTGCTCTATTTCTTTACTGTAACACCTCAGAGCCTCAA  598

seq1  TCATATACCTTTGTAAAAGGCATTGATATCGAACTTTAGAATGAAAATAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACCTTTGTAAAAGGCATTGATATCGAACTTTAGAATGAAAATAA  648

seq1  TTTTAAATGTTTAGATTGAGGCTCTGGATGTACATTTTTATCTCAGATCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTTTAGATTGAGGCTCTGGATGTACATTTTTATCTCAGATCA  698

seq1  TGTCATTTTGAGTTGTATTTGTATTAAAATGAAATATCACTAAATGGCCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTTGAGTTGTATTTGTATTAAAATGAAATATCACTAAATGGCCA  748

seq1  TCTACAAAGTCACTTTTAAAAAATATCTCCAGAGTAAAAAGCACCTAACA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTCACTTTTAAAAAATATCTCCAGAGTAAAAAGCACCTAACA  798

seq1  TCAGTGAGCAGCCTATTAATATTCTCGTCCTTATTATCTCTCATCTTTTA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGCAGCCTATTAATATTCTCGTCCTTATTATCTCTCATCTTTTA  848

seq1  TTAACCATCTTGAGTTGGAGCAATGATGTATTTCCAATAGTAAACTCTCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATCTTGAGTTGGAGCAATGATGTATTTCCAATAGTAAACTCTCA  898

seq1  CTATCACTTCCCAGAAAAAAAAAAAAAGCCACAAAAAAAAAAAAAAAAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTTCCCAGAAAAAAAAAAAAAGCCACAAAAAAAAAAAAAAAAAA  948

seq1  CAAAGCAAAAGCAGAATAATCTTTAACACCATTGACTTGAAATATAGACA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAAGCAGAATAATCTTTAACACCATTGACTTGAAATATAGACA  998

seq1  TACACTTCGAGGTATAAATAAAATGTTACCTGGTCCTACATATTCTATAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTCGAGGTATAAATAAAATGTTACCTGGTCCTACATATTCTATAC  1048

seq1  TAAAACAGAGAAGAGTGGACAATGTTCTTGCCTCAGGACTGTCTGTCTAT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGAGAAGAGTGGACAATGTTCTTGCCTCAGGACTGTCTGTCTAT  1098

seq1  CTTTCTGCCTGTCAGTTGTTTGAGATAGAGTGTCATATAGCCCAGGCTGG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCCTGTCAGTTGTTTGAGATAGAGTGTCATATAGCCCAGGCTGG  1148

seq1  TTTTGAATTC  1147
      ||||||||||
seq2  TTTTGAATTC  1158

seq1: chr13_89610081_89611185
seq2: B6Ng01-239A09.g_65_1162

seq1  GAATTCAGAGCAGCACCAATATGTAAGAAACCTTCCCTAGACCAAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCAGCACCAATATGTAAGAAACCTTCCCTAGACCAAGAGAA  50

seq1  ACTAAAGAATATTTCCTTGAGTTTCTGCAAGATAGGAGAAAGTACCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAATATTTCCTTGAGTTTCTGCAAGATAGGAGAAAGTACCTGTC  100

seq1  CTTTTAGCCAGACTACAGTATTGCATGATTGGCCAGCATGAAGTAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCCAGACTACAGTATTGCATGATTGGCCAGCATGAAGTAGGACA  150

seq1  CCCAAGACAGCCTTCACTCATTACTGAGAAATAATTAATAATAAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACAGCCTTCACTCATTACTGAGAAATAATTAATAATAAAACACA  200

seq1  AGTTGAGTTCTACCTGGTAAATCTTAAAAAGCAATAACTAAAAATATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTTCTACCTGGTAAATCTTAAAAAGCAATAACTAAAAATATCTA  250

seq1  TCCCAAACTGAATATATTTATAAGCTCAGCTTGAGCAGAACTGGTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACTGAATATATTTATAAGCTCAGCTTGAGCAGAACTGGTGATGT  300

seq1  GAAACTTATAATTTTGGTCTGCCCACCAAGATTAGTAGATACTCAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTATAATTTTGGTCTGCCCACCAAGATTAGTAGATACTCAGAGGA  350

seq1  CCATAAAAATTCAAGGAGTAGAAAACCAATCAGTTGTATCTGATTTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAATTCAAGGAGTAGAAAACCAATCAGTTGTATCTGATTTAGGT  400

seq1  ATAGGTGTTATCCTTCAAGGAATATAAATGAATGTTAGAACTGTATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTTATCCTTCAAGGAATATAAATGAATGTTAGAACTGTATCCCA  450

seq1  CACATACAAAATATCCTCTTGGAAGATAACAATAACTATATAAAACTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAAAATATCCTCTTGGAAGATAACAATAACTATATAAAACTATC  500

seq1  TGAAAATATCACTGCTTAGAAGACTGAACATTTCTCCATTGCATGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATCACTGCTTAGAAGACTGAACATTTCTCCATTGCATGCAAAA  550

seq1  TGACCAGAGCAAAGGTAATAATAGAGATGAAACAGGAAGGAGTTGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGAGCAAAGGTAATAATAGAGATGAAACAGGAAGGAGTTGATGAA  600

seq1  AGACTTAAAGAGAGAACTTTGAGCATCCATCAGCCAACTATGACACTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAAGAGAGAACTTTGAGCATCCATCAGCCAACTATGACACTTAT  650

seq1  GACCAGTTGCCCCCAACTTACAGTGCAGCAGTCAGAGCCTCCTTGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTTGCCCCCAACTTACAGTGCAGCAGTCAGAGCCTCCTTGCCAAG  700

seq1  AGACTTTATCCCTCAAACAGGGAGCCAAAGTAACCCCTCTTTTCTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTATCCCTCAAACAGGGAGCCAAAGTAACCCCTCTTTTCTTTAAA  750

seq1  TGAATGCATGAAGCCATAATACCAACAGTGAATCTTTGAAAATATCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCATGAAGCCATAATACCAACAGTGAATCTTTGAAAATATCAAAA  800

seq1  ATTGACTGATACCTTGGTAAACCAATGAGAAAAGTTAATGAAAAATTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGATACCTTGGTAAACCAATGAGAAAAGTTAATGAAAAATTTAG  850

seq1  TAACATCAGGTCCCACAGAGGTAATATCACAAGAGATTCTGTCAAAAATA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCA-GTCCCACAGAGGTAATATCACAAGAGATTCTGTCAAAAATA  899

seq1  ATATGGTAATTTTACCAATGGACTTGTGCCAACTCACATATTATAATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTAATTTTACCAATGGACTTGTGCCAACTCACATATTATAATCAA  949

seq1  TGACCATTTAGGTTTTTTTTCTCTTTTTTTTTATTAGGTATTTTCCTCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTTAGGTTTTTTTTCTCTTTTTTTTTATTAGGTATTTTCCTCGT  999

seq1  TTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCACCCACCCCCAT  1050
      |||||||||  |||||||||||||||| ||||||||||| ||| ||||||
seq2  TTACATTTC--ATGCTATCCCAAAAGT-CCCCATACCCA-CCAACCCCAT  1045

seq1  TCCCCTACCCACCC-ACTCCCCCTTTTTGGCCCTGGCGTTCTCCTGTAAG  1099
      | |||||||||||| ||| ||||  ||||||||| ||||||| |||| | 
seq2  T-CCCTACCCACCCAACTTCCCC--TTTGGCCCTTGCGTTCTTCTGTTAA  1092

seq1  GAGCAT  1105
      ||||||
seq2  GAGCAT  1098