BAC Information

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BAC

Clone NameB6Ng01-239C13
Chromosome13 (Build37)
Map Location 42,350,138 - 42,488,303
singlet/doubletdoublet
Overlap geneEdn1
Upstream geneBC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1
Downstream geneHn1-ps4, Phactr1, Tbc1d7, Gfod1, Sirt5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239C13.bB6Ng01-239C13.g
ACCGA049660GA049661
length1,2101,120
definitionB6Ng01-239C13.b B6Ng01-239C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,350,138 - 42,351,335)(42,487,204 - 42,488,303)
sequence
gaattcattctcttctaccttggcgagggttcctggaagcaaactcagga
cagggctttagaaacaagtacatttactccatgagccctaactcacatct
ttaaaaaatatatatatatgtgtatatcttttgctttttttgaggcaagg
tctcactatttagccttagctggtctgaaactctcagtgtagagcaaact
gaccttgaactcagagaaatctgcctgcccctgtttcatgggtgctggca
ttaaaggtgtgtaccaccatgcctatctctaatgtatcttttaagggcgt
taggtaggtgctaatgaaatattctgagatgaggttggcccctgtttgca
tgccttgaatctatgctcactttgccacttgccctggctctgtctttccc
tgtccaaacatgctttgactactatgaccttctgcttccccagccctcct
tgtgacctgcatataatgttttctctcgatgacattgccccacttgccca
ttcttttccagtgaaggatctctccagaccattttctggtacattcttga
gcactctacatacttgctttattaagtatttacagtcatagtgattcatt
catttataaatatccctgcctttgttgaaggactgcttgttagtttgaat
gagattgcctcctgccttccttagaggctcatatgtttgaacagttgatc
cttagctggtggaatgtttttggaaggattagaaggtgtggccttgctgg
agaaggtgtgtcactgggagtaggctttaagatttcaaaggactggcacc
attgccagtgtctgtttctgcctctgacttgtggatcaaaatgtaagggc
tctgctgctcttgacatgttaccttagatctgccatcatggacactaaac
ccctgaaaccgtaagctccaaattaaacacttcctgttataagttggtca
cggtggtgttttatcacagcgatagaaaataactaaggcagattgtgaat
tcttagcaggttaacaggcttgtgcctgtcatcttctatgtctgtactta
gtggcctggcttctgagaagactctcagccaagttattctattctgcttg
ccctgcatgcacaaagaaaggttaagggtgaccaggatttggctctatca
tgttgttagccttggtcaagtccatctgcaatccaaggattacacacagt
cctttatatt
gaattctctcatttattttgtaacttctaattagggcggaagtggttggg
ttgctctcgcggagagtcagatctcttgcgaaaagcatgaaagaaggagg
cactggcctttcctcacaccccagtagcttagcaggcctttgctttccac
atgggctgggataaaaatagaactttcttatgcattttggcaaaataagt
ttaaaagaagcccatcaagaaggtacctagttacagtaatactatatata
tatatatatatatatatatatatatatatatatatatatatatatcagct
cttatacatgaagccatgtttcctccagtctcctttgctaggaatttgga
gactcaataaaatcagaagctcgtgtcccttgatgtctcctaggacaggg
tagagaggtcccaaaaggaaccaggggagggattaaggaaaaggaacatt
aaatttaaaatatgctacttgaaaagtaacaaatcttgttttgtctgatt
taagaggaaaatactgactaaacagatggttgtggtgccttccccatccg
ctataggtcacagacccctggtcttcctaaaaatataagaagtacactgt
ttgatagagatttaccacagagccctcttcagcatccccaaagacaggct
ttagtaaacaatgagagatataggcgacttcataaaatatataagaaaaa
attaagataacttgaaattgaacagatagatttttaatgtaaatatctgt
attaattctttgggaatcacatacaatatatttggattatgctcacacta
gactctccacttaccacttcccagatccaccctcccatctctatagcccc
aactttgtgtcttttttttttaataatacttcaaatcccaatttgctatc
catatacttcctgggtgtgaacatccactgggagcatggtcaaccgacag
gagagccacactcttaaaagaaaaacttaacctcttctcctcccagacat
cgttcttctcagtaagtaaagcatagcctttttttatattctgacaaaaa
aaagaaaattctgcaccgggcctgtttcactttaacatggatggaccttc
agatgcccattcggcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_42350138_42351335
seq2: B6Ng01-239C13.b_45_1254

seq1  GAATTCATTCTCTTCTACCTTGGCGAGGGTTCCTGGAAGCAAACTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCTTCTACCTTGGCGAGGGTTCCTGGAAGCAAACTCAGGA  50

seq1  CAGGGCTTTAGAAACAAGTACATTTACTCCATGAGCCCTAACTCACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTTAGAAACAAGTACATTTACTCCATGAGCCCTAACTCACATCT  100

seq1  TTAAAAAATATATATATATGTGTATATCTTTTGCTTTTTTTGAGGCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATATATATATATGTGTATATCTTTTGCTTTTTTTGAGGCAAGG  150

seq1  TCTCACTATTTAGCCTTAGCTGGTCTGAAACTCTCAGTGTAGAGCAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATTTAGCCTTAGCTGGTCTGAAACTCTCAGTGTAGAGCAAACT  200

seq1  GACCTTGAACTCAGAGAAATCTGCCTGCCCCTGTTTCATGGGTGCTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAACTCAGAGAAATCTGCCTGCCCCTGTTTCATGGGTGCTGGCA  250

seq1  TTAAAGGTGTGTACCACCATGCCTATCTCTAATGTATCTTTTAAGGGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGTGTACCACCATGCCTATCTCTAATGTATCTTTTAAGGGCGT  300

seq1  TAGGTAGGTGCTAATGAAATATTCTGAGATGAGGTTGGCCCCTGTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGTGCTAATGAAATATTCTGAGATGAGGTTGGCCCCTGTTTGCA  350

seq1  TGCCTTGAATCTATGCTCACTTTGCCACTTGCCCTGGCTCTGTCTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAATCTATGCTCACTTTGCCACTTGCCCTGGCTCTGTCTTTCCC  400

seq1  TGTCCAAACATGCTTTGACTACTATGACCTTCTGCTTCCCCAGCCCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAACATGCTTTGACTACTATGACCTTCTGCTTCCCCAGCCCTCCT  450

seq1  TGTGACCTGCATATAATGTTTTCTCTCGATGACATTGCCCCACTTGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTGCATATAATGTTTTCTCTCGATGACATTGCCCCACTTGCCCA  500

seq1  TTCTTTTCCAGTGAAGGATCTCTCCAGACCATTTTCTGGTACATTCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCAGTGAAGGATCTCTCCAGACCATTTTCTGGTACATTCTTGA  550

seq1  GCACTCTACATACTTGCTTTATTAAGTATTTACAGTCATAGTGATTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTACATACTTGCTTTATTAAGTATTTACAGTCATAGTGATTCATT  600

seq1  CATTTATAAATATCCCTGCCTTTGTTGAAGGACTGCTTGTTAGTTTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAATATCCCTGCCTTTGTTGAAGGACTGCTTGTTAGTTTGAAT  650

seq1  GAGATTGCCTCCTGCCTTCCTTAGAGGCTCATATGTTTGAACAGTTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCCTCCTGCCTTCCTTAGAGGCTCATATGTTTGAACAGTTGATC  700

seq1  CTTAGCTGGTGGAATGTTTTTGGAAGGATTAGAAGGTGTGGCCTTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGGTGGAATGTTTTTGGAAGGATTAGAAGGTGTGGCCTTGCTGG  750

seq1  AGAAGGTGTGTCACTGGGAGTAGGCTTTAAGATTTCAAAGGACTGGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGTGTCACTGGGAGTAGGCTTTAAGATTTCAAAGGACTGGCACC  800

seq1  ATTGCCAGTGTCTGTTTCTGCCTCTGACTTGTGGATCAAAATGTAAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGTGTCTGTTTCTGCCTCTGACTTGTGGATCAAAATGTAAGGGC  850

seq1  TCTGCTGCTCTTGACATGTTACCTTAGATCTGCCATCATGGACACTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTCTTGACATGTTACCTTAGATCTGCCATCATGGACACTAAAC  900

seq1  CCCTGAAACCGTAAGCTCCAAATTAAACACTTCCTGTTATAAGTTGGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAACCGTAAGCTCCAAATTAAACACTTCCTGTTATAAGTTGGTCA  950

seq1  CGGTGGTGTTTTATCACAGCGATAGAAAATAACTAAGGCAGATTGTGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTGTTTTATCACAGCGATAGAAAATAACTAAGGCAGATTGTGAAT  1000

seq1  TCTTAGCAGGGTTAACAGGCTTGTGCCTGTCATC-TCTATGTCTGTAC-T  1048
      |||||||| ||||||||||||||||||||||||| ||||||||||||| |
seq2  TCTTAGCA-GGTTAACAGGCTTGTGCCTGTCATCTTCTATGTCTGTACTT  1049

seq1  AGT-GCCTGGC-TCTGAGAAGACTCTCAG-CAAGT--ATCTA-TCTGCT-  1091
      ||| ||||||| ||||||||||||||||| |||||   |||| |||||| 
seq2  AGTGGCCTGGCTTCTGAGAAGACTCTCAGCCAAGTTATTCTATTCTGCTT  1099

seq1  -GCCTGCATGCACAAAGAAAG--TAAAGGTGACAAGAATTT-GCTCTATC  1137
        |||||||||||||||||||  ||| |||||| || |||| ||||||||
seq2  GCCCTGCATGCACAAAGAAAGGTTAAGGGTGACCAGGATTTGGCTCTATC  1149

seq1  ATGGTTGTAAG-CTTGGTCCAGT-CATCTTTGCATCCCAAAGATTTAACA  1185
      || ||||| || ||||||| ||| ||||  ||||  |||| ||||  |||
seq2  AT-GTTGTTAGCCTTGGTCAAGTCCATC--TGCAATCCAAGGATTACACA  1196

seq1  CAGTCCTTT-TATT  1198
      ||||||||| ||||
seq2  CAGTCCTTTATATT  1210

seq1: chr13_42487204_42488303
seq2: B6Ng01-239C13.g_67_1186 (reverse)

seq1  AAAAAG-CGA--TGGCA-CTGAAGGT-CAT-CATGTT-AAGTGAAACAGG  43
      |||||| |||   |||| |||||||| ||| |||||| ||||||||||||
seq2  AAAAAGCCGAATGGGCATCTGAAGGTCCATCCATGTTAAAGTGAAACAGG  50

seq1  -CCGGTGCAAGATTTTC-TTTTTTTGTCAGAATAT--AAAAATGCTATGC  89
       ||||||||  |||||| |||||||||||||||||  ||||| |||||||
seq2  CCCGGTGCAGAATTTTCTTTTTTTTGTCAGAATATAAAAAAAGGCTATGC  100

seq1  -TTACTTACTGAGAAG-ACGATGTCTGGGAG----AGAGAGTTAGTTTT-  132
       ||||||||||||||| ||||||||||||||    ||||  | |||||| 
seq2  TTTACTTACTGAGAAGAACGATGTCTGGGAGGAGAAGAGGTTAAGTTTTT  150

seq1  -CTTTAAGGGTGTGGCTCT-CTGTCGGTTGACCATGCT-CCAGTGGATGT  179
        |||||| |||||||||| |||||||||||||||||| |||||||||||
seq2  CTTTTAAGAGTGTGGCTCTCCTGTCGGTTGACCATGCTCCCAGTGGATGT  200

seq1  TCACACCCAGG-AGTATATGGATAGCAAATT-GGATTTGAAGTATTATT-  226
      ||||||||||| ||||||||||||||||||| ||||||||||||||||| 
seq2  TCACACCCAGGAAGTATATGGATAGCAAATTGGGATTTGAAGTATTATTA  250

seq1  AAAAAAAAAGACACAAAGTTGGGGCTATAGAGATGGGAGGGTGGATCTGG  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGACACAAAGTTGGGGCTATAGAGATGGGAGGGTGGATCTGG  300

seq1  GAAGTGGTAAGTGGAGAGTCTAGTGTGAGCATAATCCAAATATATTGTAT  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTAAGTGGAGAGTCTAGTGTGAGCATAATCCAAATATATTGTAT  350

seq1  GTGATTCCCAAAGAATTAATACAGATATTTACATTAAAAATCTATCTGTT  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCCAAAGAATTAATACAGATATTTACATTAAAAATCTATCTGTT  400

seq1  CAATTTCAAGTTATCTTAATTTTTTCTTATATATTTTATGAAGTCGCCTA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAAGTTATCTTAATTTTTTCTTATATATTTTATGAAGTCGCCTA  450

seq1  TATCTCTCATTGTTTACTAAAGCCTGTCTTTGGGGATGCTGAAGAGGGCT  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCATTGTTTACTAAAGCCTGTCTTTGGGGATGCTGAAGAGGGCT  500

seq1  CTGTGGTAAATCTCTATCAAACAGTGTACTTCTTATATTTTTAGGAAGAC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTAAATCTCTATCAAACAGTGTACTTCTTATATTTTTAGGAAGAC  550

seq1  CAGGGGTCTGTGACCTATAGCGGATGGGGAAGGCACCACAACCATCTGTT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCTGTGACCTATAGCGGATGGGGAAGGCACCACAACCATCTGTT  600

seq1  TAGTCAGTATTTTCCTCTTAAATCAGACAAAACAAGATTTGTTACTTTTC  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGTATTTTCCTCTTAAATCAGACAAAACAAGATTTGTTACTTTTC  650

seq1  AAGTAGCATATTTTAAATTTAATGTTCCTTTTCCTTAATCCCTCCCCTGG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCATATTTTAAATTTAATGTTCCTTTTCCTTAATCCCTCCCCTGG  700

seq1  TTCCTTTTGGGACCTCTCTACCCTGTCCTAGGAGACATCAAGGGACACGA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGGGACCTCTCTACCCTGTCCTAGGAGACATCAAGGGACACGA  750

seq1  GCTTCTGATTTTATTGAGTCTCCAAATTCCTAGCAAAGGAGACTGGAGGA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGATTTTATTGAGTCTCCAAATTCCTAGCAAAGGAGACTGGAGGA  800

seq1  AACATGGCTTCATGTATAAGAGCTGATATATATATATATATATATATATA  826
      |||||||||||||||||||||||||    |||||||||||||||||||||
seq2  AACATGGCTTCATGTATAAGAGCTG----ATATATATATATATATATATA  846

seq1  TATATATATATATATATATATATATATATATAGTATTACTGTAACTAGGT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATAGTATTACTGTAACTAGGT  896

seq1  ACCTTCTTGATGGGCTTCTTTTAAACTTATTTTGCCAAAATGCATAAGAA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTGATGGGCTTCTTTTAAACTTATTTTGCCAAAATGCATAAGAA  946

seq1  AGTTCTATTTTTATCCCAGCCCATGTGGAAAGCAAAGGCCTGCTAAGCTA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATTTTTATCCCAGCCCATGTGGAAAGCAAAGGCCTGCTAAGCTA  996

seq1  CTGGGGTGTGAGGAAAGGCCAGTGCCTCCTTCTTTCATGCTTTTCGCAAG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGTGAGGAAAGGCCAGTGCCTCCTTCTTTCATGCTTTTCGCAAG  1046

seq1  AGATCTGACTCTCCGCGAGAGCAACCCAACCACTTCCGCCCTAATTAGAA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGACTCTCCGCGAGAGCAACCCAACCACTTCCGCCCTAATTAGAA  1096

seq1  GTTACAAAATAAATGAGAGAATTC  1100
      ||||||||||||||||||||||||
seq2  GTTACAAAATAAATGAGAGAATTC  1120