BAC Information

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BAC

Clone NameB6Ng01-239D23
Chromosome13 (Build37)
Map Location 35,251,000 - 35,252,180
singlet/doubletsinglet
Overlap genenone
Upstream gene2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239D23.bB6Ng01-239D23.g
ACCGA049722GA049723
length1,2181,194
definitionB6Ng01-239D23.b B6Ng01-239D23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttcatcatcagagaaatgcaaatcaaaacaaacctgagat
tccatctctcaccagtcagaatggctaagatcaaaaattcaagtgacagc
agatgctggggaagatgtggagaaagaggtacactcctccactgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctgttggttcctca
gaaaattggacatagtactacctaaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaaccgttaagaaggacacatgctccactat
gttcatagcagccttatttataatagctagaagctggaatgaacccagat
gcccttcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactattcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacatggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagccaagaaac
ttagtatacccaagatataagatacaatttgcaaaacacatgaaactgaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcatccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccagagatccatcccataatt
agcctccaaatgatgacaccattgcatacactagcaagcgttggctgaaa
ggaccctgatatagctgtctcttgtgagactaggccggggcctagcaaac
acagaagtagatgctcacagtcagctattggatggatcacagggccccca
attggagagctagagaaagcatccaaggagctaaagagatctgcaaccct
gtgggtgcaacacattatgaactaaccagtaccccggagctcttgactct
agctgcatatgttatcaaagaatggctagtcgggcatcactggctagaga
agcccactgacaccgcaactttaatttgcccagttacaaggtatgccagg
gtctaaatgtattgctggttaggtagtggggccagaacaagctccctaaa
caatcgtacagtatcatc
gaattctcattgatagcagacagtagactttattacctgtcaatgggtta
cagaatttgagacaaagagacaggggcagtcagccaagcatgcatactgt
tgtggcttgtcctatttagagggataagagtttgacaataattctatgcc
acaatattttctgattgcatttttttctttagctggtcaacaagtatata
tgtagaagcccattatattcagggaattgatgaagatctgaagaactgta
tagtatctgctttcatagaactgagagtccagtggaagactgacattaaa
gtatctataaaggggataagtgggatataaaagaaagattatgctatggg
aattatactagaatcttacgtaagttagagggagcttaggaaagagtccc
tgggaaagtgatatttggttaaagtcagctggcaggtagctctgaagatc
cattggggatagtttatagaaggaataacacacacttagcccaaggattt
ctaagagcccttaatgtttgagcatgtgttgtgaaccccacaagggcgtg
agatatgcagcatttaacaaatgtaatacgaaactctgattgggtggagc
ttagaacaggcacaagttcaggaatgaactggagtgttccaggacagagg
acatgtggtcttaatgcaattaaattgtatagttatatagcatgatgaca
cataaaaagatagacagacaaataggtagatcttagagagaaagggaaag
aagaatgaaaaggagagaatgggagtgaaagccagagaacaaaattttct
gtggctgtaactaaataccacagactgtgtcatttataaagctcatgcat
gccaaagctggaaagtctaaatagaaagtacctgatgaagctcttcttcc
tacatcactgcctggtgaaaggtatctcatggcaggacagagcaggcatt
accaatgaaaaactgacttttagacaaagccactccctggaacaattcct
tagaccaataatctgtgaacagctcagtccattcactctaagaaagggtt
cctcatgacctagtcaatttccataaaaatcttgccttctttcggcagaa
caaaaatagacagacatgtcataccctcagcagagagccacatctagagg
cctgaaggagtggtctagaaggcctaaaggatctggtaaacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_35251000_35252180
seq2: B6Ng01-239D23.g_67_1260

seq1  GAATTCTCATTGATAGCAGACAGTAGACTTTATTACCTGTCAATGGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGATAGCAGACAGTAGACTTTATTACCTGTCAATGGGTTA  50

seq1  CAGAATTTGAGACAAAGAGACAGGGGCAGTCAGCCAAGCATGCATACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGAGACAAAGAGACAGGGGCAGTCAGCCAAGCATGCATACTGT  100

seq1  TGTGGCTTGTCCTATTTAGAGGGATAAGAGTTTGACAATAATTCTATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTGTCCTATTTAGAGGGATAAGAGTTTGACAATAATTCTATGCC  150

seq1  ACAATATTTTCTGATTGCATTTTTTTCTTTAGCTGGTCAACAAGTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTTCTGATTGCATTTTTTTCTTTAGCTGGTCAACAAGTATATA  200

seq1  TGTAGAAGCCCATTATATTCAGGGAATTGATGAAGATCTGAAGAACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGCCCATTATATTCAGGGAATTGATGAAGATCTGAAGAACTGTA  250

seq1  TAGTATCTGCTTTCATAGAACTGAGAGTCCAGTGGAAGACTGACATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTGCTTTCATAGAACTGAGAGTCCAGTGGAAGACTGACATTAAA  300

seq1  GTATCTATAAAGGGGATAAGTGGGATATAAAAGAAAGATTATGCTATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATAAAGGGGATAAGTGGGATATAAAAGAAAGATTATGCTATGGG  350

seq1  AATTATACTAGAATCTTACGTAAGTTAGAGGGAGCTTAGGAAAGAGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTAGAATCTTACGTAAGTTAGAGGGAGCTTAGGAAAGAGTCCC  400

seq1  TGGGAAAGTGATATTTGGTTAAAGTCAGCTGGCAGGTAGCTCTGAAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTGATATTTGGTTAAAGTCAGCTGGCAGGTAGCTCTGAAGATC  450

seq1  CATTGGGGATAGTTTATAGAAGGAATAACACACACTTAGCCCAAGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGATAGTTTATAGAAGGAATAACACACACTTAGCCCAAGGATTT  500

seq1  CTAAGAGCCCTTAATGTTTGAGCATGTGTTGTGAACCCCACAAGGGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCCCTTAATGTTTGAGCATGTGTTGTGAACCCCACAAGGGCGTG  550

seq1  AGATATGCAGCATTTAACAAATGTAATACGAAACTCTGATTGGGTGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCAGCATTTAACAAATGTAATACGAAACTCTGATTGGGTGGAGC  600

seq1  TTAGAACAGGCACAAGTTCAGGAATGAACTGGAGTGTTCCAGGACAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGGCACAAGTTCAGGAATGAACTGGAGTGTTCCAGGACAGAGG  650

seq1  ACATGTGGTCTTAATGCAATTAAATTGTATAGTTATATAGCATGATGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGTCTTAATGCAATTAAATTGTATAGTTATATAGCATGATGACA  700

seq1  CATAAAAAGATAGACAGACAAATAGGTAGATCTTAGAGAGAAAGGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAGATAGACAGACAAATAGGTAGATCTTAGAGAGAAAGGGAAAG  750

seq1  AAGAATGAAAAGGAGAGAATGGGAGTGAAAGCCAGAGAACAAAATTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAAAAGGAGAGAATGGGAGTGAAAGCCAGAGAACAAAATTTTCT  800

seq1  GTGGCTGTAACTAAATACCACAGACTGTGTCATTTATAAAGCTCATGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTAACTAAATACCACAGACTGTGTCATTTATAAAGCTCATGCAT  850

seq1  GCCAAAGCTGGAAAGTCTAAATAGAAAGTACCTGATGAAGCTCTTCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCTGGAAAGTCTAAATAGAAAGTACCTGATGAAGCTCTTCTTCC  900

seq1  TACATCACTGCCTGGTGAAAGGTATCTCATGGCAGGACAGAGCAGGCA-T  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACATCACTGCCTGGTGAAAGGTATCTCATGGCAGGACAGAGCAGGCATT  950

seq1  ACC-ATGAAAAACTGACTTTTAGAACAAAGCCACTCCCT-GAACAATTCC  997
      ||| ||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  ACCAATGAAAAACTGACTTTTAG-ACAAAGCCACTCCCTGGAACAATTCC  999

seq1  TTAGACCAATAATCTGTGAACAGCTCAGTCCATTCACTCTAAGGAAAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||| || || 
seq2  TTAGACCAATAATCTGTGAACAGCTCAGTCCATTCACTCTAAGAAAGGGT  1049

seq1  TCCTCATGACCTAGTC-ATTTCCAT-AAAATCCTG-CTTC-TTCGGCAG-  1092
      |||||||||||||||| |||||||| |||||| || |||| |||||||| 
seq2  TCCTCATGACCTAGTCAATTTCCATAAAAATCTTGCCTTCTTTCGGCAGA  1099

seq1  ACAAAATAGGACAGACATGTTCATA-CCTCAGCAGAGAGCAACATCTAAG  1141
      ||||||   |||||||||| ||||| |||||||||||||| |||||| ||
seq2  ACAAAAATAGACAGACATG-TCATACCCTCAGCAGAGAGCCACATCT-AG  1147

seq1  AAGGCTGAA-GAGTGGTC---AAGAGCTAAAGGTTCTG---AACATC  1181
      | | ||||| ||||||||   |||  ||||||| ||||   ||||||
seq2  AGGCCTGAAGGAGTGGTCTAGAAGGCCTAAAGGATCTGGTAAACATC  1194