BAC Information

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BAC

Clone NameB6Ng01-239J12
Chromosome13 (Build37)
Map Location 79,285,142 - 79,286,267
singlet/doubletsinglet
Overlap genenone
Upstream gene1110033M05Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
Downstream geneLOC666925, LOC382780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239J12.bB6Ng01-239J12.g
ACCGA049977GA049978
length1,2341,130
definitionB6Ng01-239J12.b B6Ng01-239J12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttgctgtttacctgatatgctacaatctcatgttaaactagc
aactgttctacttgtgtaaagtctcggtatctacctaaatgatcttgaaa
aggtaattttgttgttgttattgctttttattagatattttctctattta
catcgcaaatgacacctcctttcctggtttccccttcgaaagcccccatc
ccatcccctcccctgttcaccaatccacccactcttgcttctctatcctg
gcatttcccgacatttgggcatcaagccttcacaggaccaagggcctctc
ctcccattgatgtcagacaaggccatcctctgctatatatgtggttggag
ccatgggtccctccatatgtactctttggttggtgttttagtccctggga
gctctaggggtactgttcggttcatattgttcctcctatgggtctgcaaa
ccccttcagctccttgggtcttttctctagctcctccattggggaccctg
tgctcagtcccatggttggctgagagcatccatgtctgtatttgtcaggc
attgctgagcttctcaggaggcagctgtatcaggctcctgtcagcaaaca
cttgttggcacccacaatagtgtctgggtttagtgactgtatatggggtg
aatccccaggtgaggcagtctctaaagggttttatgtaatagtaatatga
aagtgacaggtatttctctatccctatctagctcccaaattagtctccca
gacagagactactagatttattaatcaagtttaccacactatacccatgt
agtcattgatatattctaatactctaagccagtctggctacctcccagaa
aaatccctgagatacttgcattttagcattggtctggctctctgggtttt
aacatgtgttctcctatgatttctccagaaccacttcctcatggtaaatt
tctcttattgtctctctccctctctccttccccttactggcagaagccca
gcccttatttcttctcttttggattagtcattggatgatcaactttaatt
ggacaatgaacatggagcatgttttacacaacttgaaattagattttttt
tttttttttagaggttaggtagtacaatgtcagattttaagcaagcattg
aaggcctgagatcagtatttggaataattcaaagattagtgtcttatatc
cgtgatacactataaaacccttctatgctggcct

gaattcagcagacagttcaacaatggtggatgagatattgagagtttatt
ttccacaacagaagtaaattaagcccccaaagatattaaagatttgaaca
acattcacaacgtgctatcttgcaacactttccttaaggagctctctacc
agacagacaacaaaaacaaccagatgtgtaaataccaaagcccaacttgg
tagacgaataaattttattggagttacttagaggaataccagtgagggtt
actacaggaacagaaatggctcaaagacagatgtatcaccagtgctcacc
tcaacacaatgacagctcatataatgaaacctacagtgcaccgtttaacc
tgcaggcaagtcaccaggttgaagagtgtccttttctgtagtgctgttgg
tctgagttcttccaaggaacttgagtgattgaagcttcttccaggcaatt
cagtttgtgaacaagtaagtgtgtcttagcagtcctttcctgcttataca
tgcttgcagaggcttaggcttaggggattttgtctgtttgggggattacc
ggaagctctttttctgttaacctcctgaacttcatctctcacataaaaca
tcttgtttttatattttggtcttttttccatttttattagttattctatt
cattttcatttaaaatgttatcccccttactagtttcccctttacaagcc
ccctatcccttcctactccccattcgtctctgagggtgctcccctaccag
tccactcactcctgcctcagtgccctagcatttcctccatcctgggtcat
tgagacttcacaggatcaggggggcttccctcccagtgatgtccactaat
gtaatactctgctacatagctgtagcgatgggtccccccaatgcatactc
tttagttggtggtttaatccctgggaacttcggaggttctggtttgttga
tattgttgttcttcctaagaggttgcattccccttttgctcctatatttc
tttccctaacttctcagtgtggtgtctgcatgttccgtcctatgtttagc
tgtggtggcatccacatctattatggcaagttctggcagagccttcacat
gcacttcaccacatcagcattagtgtttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79285142_79286267
seq2: B6Ng01-239J12.g_64_1193

seq1  GAATTCAGCAGACAGTTCAACAATGGTGGATGAGATATTGAGAGTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGACAGTTCAACAATGGTGGATGAGATATTGAGAGTTTATT  50

seq1  TTCCACAACAGAAGTAAATTAAGCCCCCAAAGATATTAAAGATTTGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAACAGAAGTAAATTAAGCCCCCAAAGATATTAAAGATTTGAACA  100

seq1  ACATTCACAACGTGCTATCTTGCAACACTTTCCTTAAGGAGCTCTCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACAACGTGCTATCTTGCAACACTTTCCTTAAGGAGCTCTCTACC  150

seq1  AGACAGACAACAAAAACAACCAGATGTGTAAATACCAAAGCCCAACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAACAAAAACAACCAGATGTGTAAATACCAAAGCCCAACTTGG  200

seq1  TAGACGAATAAATTTTATTGGAGTTACTTAGAGGAATACCAGTGAGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGAATAAATTTTATTGGAGTTACTTAGAGGAATACCAGTGAGGGTT  250

seq1  ACTACAGGAACAGAAATGGCTCAAAGACAGATGTATCACCAGTGCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGAACAGAAATGGCTCAAAGACAGATGTATCACCAGTGCTCACC  300

seq1  TCAACACAATGACAGCTCATATAATGAAACCTACAGTGCACCGTTTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAATGACAGCTCATATAATGAAACCTACAGTGCACCGTTTAACC  350

seq1  TGCAGGCAAGTCACCAGGTTGAAGAGTGTCCTTTTCTGTAGTGCTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAAGTCACCAGGTTGAAGAGTGTCCTTTTCTGTAGTGCTGTTGG  400

seq1  TCTGAGTTCTTCCAAGGAACTTGAGTGATTGAAGCTTCTTCCAGGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCTTCCAAGGAACTTGAGTGATTGAAGCTTCTTCCAGGCAATT  450

seq1  CAGTTTGTGAACAAGTAAGTGTGTCTTAGCAGTCCTTTCCTGCTTATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTGAACAAGTAAGTGTGTCTTAGCAGTCCTTTCCTGCTTATACA  500

seq1  TGCTTGCAGAGGCTTAGGCTTAGGGGATTTTGTCTGTTTGGGGGATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAGAGGCTTAGGCTTAGGGGATTTTGTCTGTTTGGGGGATTACC  550

seq1  GGAAGCTCTTTTTCTGTTAACCTCCTGAACTTCATCTCTCACATAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTTTTTCTGTTAACCTCCTGAACTTCATCTCTCACATAAAACA  600

seq1  TCTTGTTTTTATATTTTGGTCTTTTTTCCATTTTTATTAGTTATTCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTTATATTTTGGTCTTTTTTCCATTTTTATTAGTTATTCTATT  650

seq1  CATTTTCATTTAAAATGTTATCCCCCTTACTAGTTTCCCCTTTACAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATTTAAAATGTTATCCCCCTTACTAGTTTCCCCTTTACAAGCC  700

seq1  CCCTATCCCTTCCTACTCCCCATTCGTCTCTGAGGGTGCTCCCCTACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCCCTTCCTACTCCCCATTCGTCTCTGAGGGTGCTCCCCTACCAG  750

seq1  TCCACTCACTCCTGCCTCAGTGCCCTAGCATTTCC-CCATCCTGGGTCAT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCACTCACTCCTGCCTCAGTGCCCTAGCATTTCCTCCATCCTGGGTCAT  800

seq1  TGAGACTTCACAGGATCA-GGGGGCTTCCCTCCCAGTGATGTCCACTAAT  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAGACTTCACAGGATCAGGGGGGCTTCCCTCCCAGTGATGTCCACTAAT  850

seq1  GTAATACTCTGCTACATAGCTGTAGCGATGGGTCCCCCCAATGCATACTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTCTGCTACATAGCTGTAGCGATGGGTCCCCCCAATGCATACTC  900

seq1  TTTAGTTGGTGGTTTAATCCCTGGGAACTTCGGAGGTTCTGGTTTGTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTGGTGGTTTAATCCCTGGGAACTTCGGAGGTTCTGGTTTGTTGA  950

seq1  TATTGTTGTTCTTCCTAAGAGGTTGCAATCCCCTTTTGCTCCTATATTTC  998
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATTGTTGTTCTTCCTAAGAGGTTGCATTCCCCTTTTGCTCCTATATTTC  1000

seq1  TTTCCCTAACTTCTCCAGTGTGGTGTCTGCATGTTCCGTCCTATGTTTAG  1048
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAACTTCT-CAGTGTGGTGTCTGCATGTTCCGTCCTATGTTTAG  1049

seq1  CTGTG--TGCATCCACATCTATATTGGCCAGGTTCTGGCAGAGCCTCACC  1096
      |||||   ||||||||||||||  ||| || |||||||||||||||   |
seq2  CTGTGGTGGCATCCACATCTATTATGG-CAAGTTCTGGCAGAGCCTTCAC  1098

seq1  ATGCAC-TCA-CACATCAGCAATAGTGTTTCA  1126
      |||||| ||| |||||||||| ||||||||||
seq2  ATGCACTTCACCACATCAGCATTAGTGTTTCA  1130


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