BAC Information

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BAC

Clone NameB6Ng01-240D02
Chromosome13 (Build37)
Map Location 113,836,803 - 114,012,949
singlet/doubletdoublet
Overlap geneCdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1
Upstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik
Downstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240D02.bB6Ng01-240D02.g
ACCGA050424GA050425
length1,1301,024
definitionB6Ng01-240D02.b B6Ng01-240D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,836,803 - 113,837,928)(114,011,922 - 114,012,949)
sequence
gaattctatcgttttagtagatccttaagacgcccccttctacgaaaacg
ttttaccagaaggtggtgctcttgtaacttggaaatgagtggtcatcggg
ctgctcagcatcccgtgtgttcactgagcaatagattggctgtggaggac
tgaataacacccagaaatggcttagagtgtagattaatgtggtctgttaa
tatgacgtgtgaccacaaagaacttaaaggttttatgtatttattgacgt
actatatgaatatagagaatatttataatagagcaacgaaggctggaaaa
gatcatcctatttattctgacgtcatctagtgaaggcaaccagatgccag
gagaagacagcaaaaatagaaagccataaaggcataacacccattctcta
ttagaaaccatagcagctattgtcttcttcaattttgtctttgtcactgg
tgagatagtttacaacataacatgcacacacacacacacacacacacaca
ctcacacacacagaggcacacattcacaggcacacaactcacatacacag
atacacacacacagacatccacacacaggcacacatatgcagatacacac
aggtatacatatgaacacacaggcacagacataggcacatacacacaggt
atacacacatatacataggcacacacccagatacacccatatacacatat
ccccatacatacacatatatacacacattccccccacatatgcaccctca
cacacatagcccctcatatacatatacatacacatacatatacatacaca
tatatacaatacacactatagatatgcccacatgcatacacacgcacata
tatcccactgataaatttcatgaaatggttctttacccactctgtagtcc
tgaccattgcacttctgagacagcatggttctgacctatgaaaatgactc
atggattccaaactgtagatgaaaaaatcctgggctctgtataaagcaca
accctttgcagcagaattcaaaatatttaaataagcagaatttcaaggca
cagcccaaaatgaatccgcaacccaacatctgtgcgaacacacctcatta
gctgctgtatccttcaatctcatttctctt
gaattcctgggttattttcaaaccaaaaaaaacaaaaaaaaaaaaaaaaa
acaacccttcaccgttgccaagagaggcaggagttcctgaacaggccagc
attcctcggtttccttcaagagctgggacttttctaaacggagcttagaa
tgcattatattaggaagaatcctctgaataagctaaggggaagccacaga
ggaagcaagcaaagtcccgaaataaaacgcaggaatagaaaaactaaaaa
taacgcgcagggacctgggccacatctgcagggctccccacattccccga
agcattgtactttttttttttttttttggttctgttttcagaggcatatg
ctaataattgtttggagaactaaataaaacactattatttgtttttaaaa
atagtcacccctttgtagaactgtgagcgtttctaccaaagttaactgaa
ttttgacttggggctattaacctttaatggatagctttaatttttgctct
gaagtcagttttctattgattgtaaatggaatgtgtgggacactttaaat
gtttcagtcttgcagcagcgaatacattgaacttaaaggaaataatgaga
ttggcttccatagtaacacaggttcgctacaggggaggcacgatggtggg
agtcactggattgtacagagcgtgtgtagagattattgcaacactgctgt
cagtcagtcgttgtccacaccttgaaaagaggtcatggagggaatgaagg
ctgaacaactcgcctgaggtcaccaagcaactcagtagattgttgccttg
ttgactctgaggcaaaacttccagccctcctgccctcctgaagaactttt
agatgtcaattgtctttttaaaaatgtgctaactgtgtagttagctcaga
gctacaggcaggatgctcattgcttgctggctccatcggtcacagttata
gttagctttctaggtagatccatgcattgataggtgccacccctgtacat
aaacttctcttctgcattagttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113836803_113837928
seq2: B6Ng01-240D02.b_47_1176

seq1  GAATTCTATCGTTTTAGTAGATCCTTAAGACGCCCCCTTCTACGAAAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCGTTTTAGTAGATCCTTAAGACGCCCCCTTCTACGAAAACG  50

seq1  TTTTACCAGAAGGTGGTGCTCTTGTAACTTGGAAATGAGTGGTCATCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAGAAGGTGGTGCTCTTGTAACTTGGAAATGAGTGGTCATCGGG  100

seq1  CTGCTCAGCATCCCGTGTGTTCACTGAGCAATAGATTGGCTGTGGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGCATCCCGTGTGTTCACTGAGCAATAGATTGGCTGTGGAGGAC  150

seq1  TGAATAACACCCAGAAATGGCTTAGAGTGTAGATTAATGTGGTCTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACACCCAGAAATGGCTTAGAGTGTAGATTAATGTGGTCTGTTAA  200

seq1  TATGACGTGTGACCACAAAGAACTTAAAGGTTTTATGTATTTATTGACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACGTGTGACCACAAAGAACTTAAAGGTTTTATGTATTTATTGACGT  250

seq1  ACTATATGAATATAGAGAATATTTATAATAGAGCAACGAAGGCTGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGAATATAGAGAATATTTATAATAGAGCAACGAAGGCTGGAAAA  300

seq1  GATCATCCTATTTATTCTGACGTCATCTAGTGAAGGCAACCAGATGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCCTATTTATTCTGACGTCATCTAGTGAAGGCAACCAGATGCCAG  350

seq1  GAGAAGACAGCAAAAATAGAAAGCCATAAAGGCATAACACCCATTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAGCAAAAATAGAAAGCCATAAAGGCATAACACCCATTCTCTA  400

seq1  TTAGAAACCATAGCAGCTATTGTCTTCTTCAATTTTGTCTTTGTCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACCATAGCAGCTATTGTCTTCTTCAATTTTGTCTTTGTCACTGG  450

seq1  TGAGATAGTTTACAACATAACATGCACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTTTACAACATAACATGCACACACACACACACACACACACACA  500

seq1  CTCACACACACAGAGGCACACATTCACAGGCACACAACTCACATACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACAGAGGCACACATTCACAGGCACACAACTCACATACACAG  550

seq1  ATACACACACACAGACATCCACACACAGGCACACATATGCAGATACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACAGACATCCACACACAGGCACACATATGCAGATACACAC  600

seq1  AGGTATACATATGAACACACAGGCACAGACATAGGCACATACACACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACATATGAACACACAGGCACAGACATAGGCACATACACACAGGT  650

seq1  ATACACACATATACATAGGCACACACCCAGATACACCCATATACACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATATACATAGGCACACACCCAGATACACCCATATACACATAT  700

seq1  CCCCATACATACACATATATACACACATTCCCCCCACATATGCACCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACATACACATATATACACACATTCCCCCCACATATGCACCCTCA  750

seq1  CACACATAGCCCCTCATATACATATACATACACATACATATACATACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGCCCCTCATATACATATACATACACATACATATACATACACA  800

seq1  TATATACAATACACACTATAGATATGCCCACATGCATACACACGCACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAATACACACTATAGATATGCCCACATGCATACACACGCACATA  850

seq1  TATCCCACTGATAAATTTCATGAAATGGTTCTTTACCCACTCTGTAGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCACTGATAAATTTCATGAAATGGTTCTTTACCCACTCTGTAGTCC  900

seq1  TGACCATTGCACTTCTGAGACAGCATGGTTCTGACCTATGAAAATGACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTGCACTTCTGAGACAGCATGGTTCTGACCTATGAAAATGACTC  950

seq1  ATGGATTCCAAACTGTAGATGAAAAAATCCTGGGCTCTGTATTAAAGCAC  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGATTCCAAACTGTAGATGAAAAAATCCTGGGCTCTGTA-TAAAGCAC  999

seq1  AACCC-TTGCAGCAGAATTC-AAATATTTAAAT-AGCAGAA-TTCAA-GC  1045
      ||||| |||||||||||||| |||||||||||| ||||||| ||||| ||
seq2  AACCCTTTGCAGCAGAATTCAAAATATTTAAATAAGCAGAATTTCAAGGC  1049

seq1  ACAAGCCCCAAATGAAATCCGCAAACCCACATCTGTGCGGACACA-CTCA  1094
      || ||||| ||||| ||||||||| || ||||||||||| ||||| ||||
seq2  AC-AGCCCAAAATG-AATCCGCAACCCAACATCTGTGCGAACACACCTCA  1097

seq1  TTAGCTGCTGTATCTTTC-ATCTCTTTTCTCTT  1126
      |||||||||||||| ||| ||||| ||||||||
seq2  TTAGCTGCTGTATCCTTCAATCTCATTTCTCTT  1130

seq1: chr13_114011922_114012949
seq2: B6Ng01-240D02.g_62_1085 (reverse)

seq1  TGAACTAAATGGCAGAAGAGAAGGTTTATGTACAGGGGTGGCACCTATCA  50
      ||||||||   ||||||||||| |||||||||||||||||||||||||||
seq2  TGAACTAA--TGCAGAAGAGAA-GTTTATGTACAGGGGTGGCACCTATCA  47

seq1  ATGCATGGGATCTACCTAGAAAGCTAACTATAACTGTGACCGATGGAGCC  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAT-GGATCTACCTAGAAAGCTAACTATAACTGTGACCGATGGAGCC  96

seq1  AGCAAGCAATGAGCATCCTGCCTGTAGCTCTGAGCTAACTACACAGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAATGAGCATCCTGCCTGTAGCTCTGAGCTAACTACACAGTTAG  146

seq1  CACATTTTTAAAAAGACAATTGACATCTAAAAGTTCTTCAGGAGGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTTAAAAAGACAATTGACATCTAAAAGTTCTTCAGGAGGGCAGG  196

seq1  AGGGCTGGAAGTTTTGCCTCAGAGTCAACAAGGCAACAATCTACTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAAGTTTTGCCTCAGAGTCAACAAGGCAACAATCTACTGAGTT  246

seq1  GCTTGGTGACCTCAGGCGAGTTGTTCAGCCTTCATTCCCTCCATGACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGACCTCAGGCGAGTTGTTCAGCCTTCATTCCCTCCATGACCTC  296

seq1  TTTTCAAGGTGTGGACAACGACTGACTGACAGCAGTGTTGCAATAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGGTGTGGACAACGACTGACTGACAGCAGTGTTGCAATAATCTC  346

seq1  TACACACGCTCTGTACAATCCAGTGACTCCCACCATCGTGCCTCCCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACGCTCTGTACAATCCAGTGACTCCCACCATCGTGCCTCCCCTGT  396

seq1  AGCGAACCTGTGTTACTATGGAAGCCAATCTCATTATTTCCTTTAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAACCTGTGTTACTATGGAAGCCAATCTCATTATTTCCTTTAAGTTC  446

seq1  AATGTATTCGCTGCTGCAAGACTGAAACATTTAAAGTGTCCCACACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTCGCTGCTGCAAGACTGAAACATTTAAAGTGTCCCACACATTC  496

seq1  CATTTACAATCAATAGAAAACTGACTTCAGAGCAAAAATTAAAGCTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAATCAATAGAAAACTGACTTCAGAGCAAAAATTAAAGCTATCC  546

seq1  ATTAAAGGTTAATAGCCCCAAGTCAAAATTCAGTTAACTTTGGTAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTTAATAGCCCCAAGTCAAAATTCAGTTAACTTTGGTAGAAAC  596

seq1  GCTCACAGTTCTACAAAGGGGTGACTATTTTTAAAAACAAATAATAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGTTCTACAAAGGGGTGACTATTTTTAAAAACAAATAATAGTGT  646

seq1  TTTATTTAGTTCTCCAAACAATTATTAGCATATGCCTCTGAAAACAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGTTCTCCAAACAATTATTAGCATATGCCTCTGAAAACAGAAC  696

seq1  CAAAAAAAAAAAAAAAAAGTACAATGCTTCGGGGAATGTGGGGAGCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAGTACAATGCTTCGGGGAATGTGGGGAGCCCTG  746

seq1  CAGATGTGGCCCAGGTCCCTGCGCGTTATTTTTAGTTTTTCTATTCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGGCCCAGGTCCCTGCGCGTTATTTTTAGTTTTTCTATTCCTGC  796

seq1  GTTTTATTTCGGGACTTTGCTTGCTTCCTCTGTGGCTTCCCCTTAGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTCGGGACTTTGCTTGCTTCCTCTGTGGCTTCCCCTTAGCTTA  846

seq1  TTCAGAGGATTCTTCCTAATATAATGCATTCTAAGCTCCGTTTAGAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGATTCTTCCTAATATAATGCATTCTAAGCTCCGTTTAGAAAAG  896

seq1  TCCCAGCTCTTGAAGGAAACCGAGGAATGCTGGCCTGTTCAGGAACTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCTTGAAGGAAACCGAGGAATGCTGGCCTGTTCAGGAACTCCT  946

seq1  GCCTCTCTTGGCAACGGTGAAGGGTTGTTTTTTTTTTTTTTTTTTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTGGCAACGGTGAAGGGTTGTTTTTTTTTTTTTTTTTTGTTTT  996

seq1  TTTTGGTTTGAAAATAACCCAGGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  TTTTGGTTTGAAAATAACCCAGGAATTC  1024