BAC Information

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BAC

Clone NameB6Ng01-240F06
Chromosome13 (Build37)
Map Location 115,850,636 - 115,851,772
singlet/doubletsinglet
Overlap geneItga1
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975
Downstream genePelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240F06.bB6Ng01-240F06.g
ACCGA050526GA050527
length1,0111,128
definitionB6Ng01-240F06.b B6Ng01-240F06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatttttaaatggggttatttgatt
ttctggagcccatcttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttacagaagttttgcagtttca
tgagtcccatttgtcaattctcaatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttccaggcttttccccaat
ttctcctctataagtttcagagtctctggttttatgtggagttccttgat
ccacttatatttgaccttagtacaaggagataggaatggatcaattcgca
ttcttctacatgaaaaccaccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctccctggtcaaagatcaaatg
accataggtgtgtgggttcatttctgggtcttcaattctgttccattggt
ctacttgtctgtcgctataccagtaccatgcagtttttaccacaattgct
ctgtagtacagctttaggtcaggcatggtgattcaaccagagaacctcac
attctttaatgtattttaaatgcaattttttaaataaataaattataaat
aatctagaaaaagaaatgagaaatcagaatgaagcgatagtatgataaca
gaaagaataataaagaccaaggaacaacagtttgtcctcaaaaaagacaa
aatctgaaagagtgtagttaaaaatggatcatgcatataactgaatgtgc
ttctacaatggtgcatatgtatgtgtaaatgagtgtgaaatgttcaagaa
tggacagtaaataaaaatatttctttcctcttcatagagaaaaatatcaa
taaattgttacatattgataacattgaatattaatcagaattacaaataa
attgactagat
gaattcttgtgcagaaatactttgcagaagttctcttctcttccttaatt
tctttcttccattcttaacctcgcacgtgctcatccatcttttgaaggta
atttcaaagtcaccctcctccactctcgccactgatggcctttctctgta
ttcccacgaagcttttacgtttattcctaaagcattgtgttaaattgcaa
ataactggcttatgtgtgcaatttcattgttctactaaagtacttaatga
tatgctaaattcctcgcaaacagtctgctatcctcctctggtgtctattt
ctcctttttgtgagtgatatagtacttctcacgcagcagtaaagcacgtg
tctagatggcacctgtagatatgtacacctttactatatgtgacccaata
aaaagcagagatgcatgagacatcttgggagccccttgcagacctgactc
cactgagagacttgcctcgttttgtcctccagcttgtcttttgtctgtct
actctcctccttcctcaggtgtgagcttctcttttataatcagagttctg
tttggactctactgtatcccgtcaaaatagcactgatgccctaatttcca
gtgtggctgcactggtcagcagcactcctgcagaggtaattatggtcaag
ggaagtcataagtattcgtctctctaacgcaataggaatggtgtccctat
aaggggaggaagaaacgcctgtctgagctcctgctcattcttcctttctc
cattctctctctgtcccctatgcacagagaggaagacacgatgacaagag
acatttataatatataaggagttacctccaaagagtccaacctaaggtcc
attggatattggacttgcagctttctgaagagtaagaaacacatttctgc
tgtgtaagctagctggtcttgatagcccaccatggcagcctgagcaagac
catcatcagaacaactgccacatagtactagaggtgagcttcaatggaag
gtgattccttgatggtgaacagaatgacaagaagaagcagactgactgac
atgagcactatacccttccctgtgccctcttcatgttacatttcttctca
tctggctacattgctaaaattaatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115850636_115851772
seq2: B6Ng01-240F06.g_67_1194

seq1  GAATTCTTGTGCAGAAATACTTTGCAGAAGTTCTCTTCTCTTCCTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGCAGAAATACTTTGCAGAAGTTCTCTTCTCTTCCTTAATT  50

seq1  TCTTTCTTCCATTCTTAACCTCGCACGTGCTCATCCATCTTTTGAAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCATTCTTAACCTCGCACGTGCTCATCCATCTTTTGAAGGTA  100

seq1  ATTTCAAAGTCACCCTCCTCCACTCTCGCCACTGATGGCCTTTCTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGTCACCCTCCTCCACTCTCGCCACTGATGGCCTTTCTCTGTA  150

seq1  TTCCCACGAAGCTTTTACGTTTATTCCTAAAGCATTGTGTTAAATTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACGAAGCTTTTACGTTTATTCCTAAAGCATTGTGTTAAATTGCAA  200

seq1  ATAACTGGCTTATGTGTGCAATTTCATTGTTCTACTAAAGTACTTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGCTTATGTGTGCAATTTCATTGTTCTACTAAAGTACTTAATGA  250

seq1  TATGCTAAATTCCTCGCAAACAGTCTGCTATCCTCCTCTGGTGTCTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAAATTCCTCGCAAACAGTCTGCTATCCTCCTCTGGTGTCTATTT  300

seq1  CTCCTTTTTGTGAGTGATATAGTACTTCTCACGCAGCAGTAAAGCACGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTGTGAGTGATATAGTACTTCTCACGCAGCAGTAAAGCACGTG  350

seq1  TCTAGATGGCACCTGTAGATATGTACACCTTTACTATATGTGACCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGGCACCTGTAGATATGTACACCTTTACTATATGTGACCCAATA  400

seq1  AAAAGCAGAGATGCATGAGACATCTTGGGAGCCCCTTGCAGACCTGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAGATGCATGAGACATCTTGGGAGCCCCTTGCAGACCTGACTC  450

seq1  CACTGAGAGACTTGCCTCGTTTTGTCCTCCAGCTTGTCTTTTGTCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGACTTGCCTCGTTTTGTCCTCCAGCTTGTCTTTTGTCTGTCT  500

seq1  ACTCTCCTCCTTCCTCAGGTGTGAGCTTCTCTTTTATAATCAGAGTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTCCTTCCTCAGGTGTGAGCTTCTCTTTTATAATCAGAGTTCTG  550

seq1  TTTGGACTCTACTGTATCCCGTCAAAATAGCACTGATGCCCTAATTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACTCTACTGTATCCCGTCAAAATAGCACTGATGCCCTAATTTCCA  600

seq1  GTGTGGCTGCACTGGTCAGCAGCACTCCTGCAGAGGTAATTATGGTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTGCACTGGTCAGCAGCACTCCTGCAGAGGTAATTATGGTCAAG  650

seq1  GGAAGTCATAAGTATTCGTCTCTCTAACGCAATAGGAATGGTGTCCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCATAAGTATTCGTCTCTCTAACGCAATAGGAATGGTGTCCCTAT  700

seq1  AAGGGGAGGAAGAAACGCCTGTCTGAGCTCCTGCTCATTCTTCCTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGGAAGAAACGCCTGTCTGAGCTCCTGCTCATTCTTCCTTTCTC  750

seq1  CATTCTCTCTCTGTCCCCTATGCACAGAGAGGAAGACACGATGACAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTCTCTGTCCCCTATGCACAGAGAGGAAGACACGATGACAAGAG  800

seq1  ACATTTATAATATATAAGGAGTTACCTCCAAAGAGTCCAACCTAAGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATAATATATAAGGAGTTACCTCCAAAGAGTCCAACCTAAGGTCC  850

seq1  ATTGGATATTGGACTTGCAGCTTTCTGAAGAGTAAGAAACACATTTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATTGGACTTGCAGCTTTCTGAAGAGTAAGAAACACATTTCTGC  900

seq1  TGTGTAAGCTAGCTGGTCTTGATAGCCCACCATGGCAGCCTGAGCAAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGCTAGCTGGTCTTGATAGCCCACCATGGCAGCCTGAGCAAGAC  950

seq1  CATCATCAGGAACAACTGCCACATAGTACTAGAGGTGAGCTTCAATGG-A  999
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  CATCATCA-GAACAACTGCCACATAGTACTAGAGGTGAGCTTCAATGGAA  999

seq1  GGTGATTCCCTGGATGGTGGAACAGAATGAC-AGAAGAAGCAGGGACTGA  1048
      ||||||| ||| |||||| |||||||||||| ||||||||||  ||||||
seq2  GGTGATT-CCTTGATGGT-GAACAGAATGACAAGAAGAAGCA--GACTGA  1045

seq1  CTGACAATGAGCCACTATA-CCTTCCCTGTGCCCTTCTTCCATGTTACAT  1097
      ||||| ||||| ||||||| |||||||||||||| |||| ||||||||| 
seq2  CTGAC-ATGAG-CACTATACCCTTCCCTGTGCCC-TCTT-CATGTTACA-  1090

seq1  TTTCTTCTTCATTCTGCTACATTGTTTAAAATTTATTTTA  1137
      ||||||| ||||   |||||||||  ||||||| ||||||
seq2  TTTCTTC-TCATCTGGCTACATTG-CTAAAATTAATTTTA  1128