BAC Information

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BAC

Clone NameB6Ng01-240F19
Chromosome13 (Build37)
Map Location 58,446,454 - 58,577,613
singlet/doubletdoublet
Overlap geneKif27, Hnrpk, Rmi1, LOC100041086
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1
Downstream geneSlc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240F19.bB6Ng01-240F19.g
ACCGA050552GA050553
length1,0471,126
definitionB6Ng01-240F19.b B6Ng01-240F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,576,571 - 58,577,613)(58,446,454 - 58,447,572)
sequence
gaattctcaaagaagcaagacagacaggcttattctctcaaagataacag
atctcagagtgttttgcatgcagatgagagacaccgtggcaaacctgcat
gtgaattcacatccgtcaaccatcacacctgacctctgcacagcagcaag
ctggagtgctccccggccttatttagtgctttgcttggttgctgttttta
agtatcagttaatgaatttgacttaaaatttttaaatgtaatatgctttg
ggagaccgataagcccctccaagagagaaaatgtacagagtgaaagacat
gcattaagaccatcatttaatacattttgctaaacacatgcatctatatg
atcccttccccagaaagtttttttctttctcctttatcgagattcactta
ataagtaacagttgtatagagctccttatataagacaatatggtatgggc
atgtacctatatgcatcaactgatgctttgaaatgcctctagataagcca
agacactgtgactaagcgctgagatggactgatcagaggaaggtaaggta
tgtgctgactcacaggttcaggctatttagacaaaaacatgcgatcacgt
gatcgaggaaaccccagagaggcagagaggggaggagtcaggggcacacc
cacagtgctcaagcctgtgtaccagaccaattcataaaggttccatcacc
tcccatagtgcaaaaacagacaaaacagacaaagcctctgggaagcgttg
gggatcaaaactgcagctcagtgtaaatgttgtgtgagtagtttctacac
agcatttctgtgcatgctcagtgcagatgcagctgtgtaaagacctagaa
agcagctggagaatggctcagtggttaagagcactgactgttcttccaga
gatcctgagttcaaatccagcaaccacatggtggctcacaccatctctaa
cgggatctgaagccctcttccgttgtgtggaagacaggtatagtgtactc
atataaataaatactaaatcttcaaaaaaaaaagagagagatgctag
gaattctttagaatgaatgacattcaaagcctctgggggcggggcagggg
ctggagttacagagctcagaggcagagtgggtacaaaatgtatgtgaggc
cctgggctcaagctccagaatcaagaaaaacaaagtgaaacaaaacataa
agaatgctttgtttccgtgttttgatttgtaattattctatgaaaatagg
agccatgccggtggcacagatctgtgacccaatctactcatgaggctgag
gcaggaggattcaaagttcaaagccagtctgggaaagtgagttaaaggcc
agtacaggcaatttataatgagactctgtcctcaaatattttaaaattaa
aaacaaaaaaaggaagcttcatgtggattctgtggcacagcacttttcta
gccctggatggatttccagcatagcaaaacaagactatgagcacagagga
aaaccaaattcatcctttattcttggcatcctgacaggtccctgggtctt
accaaggcactctagagtttcactgagctacttcacctgtgttccccttc
tcatcttctcggatgtgaaggtccttcatagacgtctccaactctagaag
atctcttaggtcttccttataaacttctatatacgacactttgattttaa
agtcaatgctaggattttcagagatgctctgaaatatttcttggatagct
cgaggaatgatacccttttgaccctccacaactgatgctgaaaattcaga
aatagaaagcatatctgagtcttgaaataaacaaaggctacaatctggaa
tttatgcttaatatatttttcttacatttcttttttttttttttttttaa
gatttatttatttattatatgtaagtacatttgtagctgtcttcagacac
ctccagaagagggcgcccagatcctcgttacggatggttgtgagccacca
tgtggttgctgggattgaactctggaccttcggaagagcagtcgggtgcc
tcttacccactggagccatctcacaggcccctacatttctaattatagac
ttgttaacctggacaggcacggtggcacaatactttcttctagcactcaa
ggagacaggagggccagttcaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58576571_58577613
seq2: B6Ng01-240F19.b_44_1078 (reverse)

seq1  TCTTTTTTTTTTTAAAGATTTAGTTATTTTATTTATATGAGTACACTATA  50
      || |||||||||| ||||||||||   |||||||||||||||||||||||
seq2  TC-TTTTTTTTTTGAAGATTTAGT--ATTTATTTATATGAGTACACTATA  47

seq1  CCTGTCTTCCAACACACCGGAAGAGGGCTTCAGATCCCGTTAGAGATGGT  100
      |||||||||| ||||| |||||||||||||||||||||||||||||||| 
seq2  CCTGTCTTCC-ACACAACGGAAGAGGGCTTCAGATCCCGTTAGAGATGG-  95

seq1  TGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATCTCTGGAAGA  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGTTGCT-GGATTTGAACTCAGGATCTCTGGAAGA  144

seq1  ACAGTCAGTGCTCTTAACCACTGAGCCATTTCTCCAGCCTGCCTTCTAGG  200
      |||||||||||||||||||||||||||| |||||||| |||| |||||||
seq2  ACAGTCAGTGCTCTTAACCACTGAGCCA-TTCTCCAG-CTGCTTTCTAGG  192

seq1  TCTTTACACAGCTGCATCTGCACTGAGCATGCACAGAAATGCTGTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACACAGCTGCATCTGCACTGAGCATGCACAGAAATGCTGTGTAGA  242

seq1  AACTACTCACACAACATTTACACTGAGCTGCAGTTTTGATCCCCAACGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTCACACAACATTTACACTGAGCTGCAGTTTTGATCCCCAACGCT  292

seq1  TCCCAGAGGCTTTGTCTGTTTTGTCTGTTTTTGCACTATGGGAGGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGCTTTGTCTGTTTTGTCTGTTTTTGCACTATGGGAGGTGATG  342

seq1  GAACCTTTATGAATTGGTCTGGTACACAGGCTTGAGCACTGTGGGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTATGAATTGGTCTGGTACACAGGCTTGAGCACTGTGGGTGTGC  392

seq1  CCCTGACTCCTCCCCTCTCTGCCTCTCTGGGGTTTCCTCGATCACGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTCCTCCCCTCTCTGCCTCTCTGGGGTTTCCTCGATCACGTGAT  442

seq1  CGCATGTTTTTGTCTAAATAGCCTGAACCTGTGAGTCAGCACATACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGTTTTTGTCTAAATAGCCTGAACCTGTGAGTCAGCACATACCTTA  492

seq1  CCTTCCTCTGATCAGTCCATCTCAGCGCTTAGTCACAGTGTCTTGGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTGATCAGTCCATCTCAGCGCTTAGTCACAGTGTCTTGGCTTA  542

seq1  TCTAGAGGCATTTCAAAGCATCAGTTGATGCATATAGGTACATGCCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCATTTCAAAGCATCAGTTGATGCATATAGGTACATGCCCATA  592

seq1  CCATATTGTCTTATATAAGGAGCTCTATACAACTGTTACTTATTAAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGTCTTATATAAGGAGCTCTATACAACTGTTACTTATTAAGTGA  642

seq1  ATCTCGATAAAGGAGAAAGAAAAAAACTTTCTGGGGAAGGGATCATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGATAAAGGAGAAAGAAAAAAACTTTCTGGGGAAGGGATCATATAG  692

seq1  ATGCATGTGTTTAGCAAAATGTATTAAATGATGGTCTTAATGCATGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGTTTAGCAAAATGTATTAAATGATGGTCTTAATGCATGTCTT  742

seq1  TCACTCTGTACATTTTCTCTCTTGGAGGGGCTTATCGGTCTCCCAAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTACATTTTCTCTCTTGGAGGGGCTTATCGGTCTCCCAAAGCA  792

seq1  TATTACATTTAAAAATTTTAAGTCAAATTCATTAACTGATACTTAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATTTAAAAATTTTAAGTCAAATTCATTAACTGATACTTAAAAAC  842

seq1  AGCAACCAAGCAAAGCACTAAATAAGGCCGGGGAGCACTCCAGCTTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCAAGCAAAGCACTAAATAAGGCCGGGGAGCACTCCAGCTTGCTG  892

seq1  CTGTGCAGAGGTCAGGTGTGATGGTTGACGGATGTGAATTCACATGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAGGTCAGGTGTGATGGTTGACGGATGTGAATTCACATGCAGG  942

seq1  TTTGCCACGGTGTCTCTCATCTGCATGCAAAACACTCTGAGATCTGTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACGGTGTCTCTCATCTGCATGCAAAACACTCTGAGATCTGTTAT  992

seq1  CTTTGAGAGAATAAGCCTGTCTGTCTTGCTTCTTTGAGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAGAATAAGCCTGTCTGTCTTGCTTCTTTGAGAATTC  1035

seq1: chr13_58446454_58447572
seq2: B6Ng01-240F19.g_65_1190

seq1  GAATTCTTTAGAATGAATGACATTCAAAGCCTCTGGGGGCGGGGCAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAATGAATGACATTCAAAGCCTCTGGGGGCGGGGCAGGGG  50

seq1  CTGGAGTTACAGAGCTCAGAGGCAGAGTGGGTACAAAATGTATGTGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTACAGAGCTCAGAGGCAGAGTGGGTACAAAATGTATGTGAGGC  100

seq1  CCTGGGCTCAAGCTCCAGAATCAAGAAAAACAAAGTGAAACAAAACATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTCAAGCTCCAGAATCAAGAAAAACAAAGTGAAACAAAACATAA  150

seq1  AGAATGCTTTGTTTCCGTGTTTTGATTTGTAATTATTCTATGAAAATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTTGTTTCCGTGTTTTGATTTGTAATTATTCTATGAAAATAGG  200

seq1  AGCCATGCCGGTGGCACAGATCTGTGACCCAATCTACTCATGAGGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCCGGTGGCACAGATCTGTGACCCAATCTACTCATGAGGCTGAG  250

seq1  GCAGGAGGATTCAAAGTTCAAAGCCAGTCTGGGAAAGTGAGTTAAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGATTCAAAGTTCAAAGCCAGTCTGGGAAAGTGAGTTAAAGGCC  300

seq1  AGTACAGGCAATTTATAATGAGACTCTGTCCTCAAATATTTTAAAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGCAATTTATAATGAGACTCTGTCCTCAAATATTTTAAAATTAA  350

seq1  AAACAAAAAAAGGAAGCTTCATGTGGATTCTGTGGCACAGCACTTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAAGGAAGCTTCATGTGGATTCTGTGGCACAGCACTTTTCTA  400

seq1  GCCCTGGATGGATTTCCAGCATAGCAAAACAAGACTATGAGCACAGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGATGGATTTCCAGCATAGCAAAACAAGACTATGAGCACAGAGGA  450

seq1  AAACCAAATTCATCCTTTATTCTTGGCATCCTGACAGGTCCCTGGGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAATTCATCCTTTATTCTTGGCATCCTGACAGGTCCCTGGGTCTT  500

seq1  ACCAAGGCACTCTAGAGTTTCACTGAGCTACTTCACCTGTGTTCCCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCACTCTAGAGTTTCACTGAGCTACTTCACCTGTGTTCCCCTTC  550

seq1  TCATCTTCTCGGATGTGAAGGTCCTTCATAGACGTCTCCAACTCTAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCTCGGATGTGAAGGTCCTTCATAGACGTCTCCAACTCTAGAAG  600

seq1  ATCTCTTAGGTCTTCCTTATAAACTTCTATATACGACACTTTGATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAGGTCTTCCTTATAAACTTCTATATACGACACTTTGATTTTAA  650

seq1  AGTCAATGCTAGGATTTTCAGAGATGCTCTGAAATATTTCTTGGATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGCTAGGATTTTCAGAGATGCTCTGAAATATTTCTTGGATAGCT  700

seq1  CGAGGAATGATACCCTTTTGACCCTCCACAACTGATGCTGAAAATTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAATGATACCCTTTTGACCCTCCACAACTGATGCTGAAAATTCAGA  750

seq1  AATAGAAAGCATATCTGAGTCTTGAAATAAACAAAGGCTACAATCTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGCATATCTGAGTCTTGAAATAAACAAAGGCTACAATCTGGAA  800

seq1  TTTATGCTTAATATATTTTTCTTACATTTC--TTTTTTTTTTTTTTTTAA  848
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TTTATGCTTAATATATTTTTCTTACATTTCTTTTTTTTTTTTTTTTTTAA  850

seq1  GATTTATTTATTTATTATATGTAAGTACA-TTGTAGCTGTCTTCAGACA-  896
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  GATTTATTTATTTATTATATGTAAGTACATTTGTAGCTGTCTTCAGACAC  900

seq1  CTCCAGAAGAGGGCG-CCAGAT-CTCGTTACGGATGGTTGTGAGCCACCA  944
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CTCCAGAAGAGGGCGCCCAGATCCTCGTTACGGATGGTTGTGAGCCACCA  950

seq1  TGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTG-  993
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  TGTGGTTGCTGGGA-TTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGC  999

seq1  CTCTTACCCACT-GAGCCATCTCACCAGCCCCTACATTTCT-ATTATAAG  1041
      |||||||||||| ||||||||||||  |||||||||||||| ||||| ||
seq2  CTCTTACCCACTGGAGCCATCTCACAGGCCCCTACATTTCTAATTAT-AG  1048

seq1  AATTGTTAAACCTGGACAGGCACGGTGGCAC-ATACCTTTTCTTCTAGCA  1090
      | ||||| ||||||||||||||||||||||| ||||  ||||||||||||
seq2  ACTTGTT-AACCTGGACAGGCACGGTGGCACAATAC--TTTCTTCTAGCA  1095

seq1  CTCAA-GAGACA-GAGGCACAGTTCAAAATT  1119
      ||||| |||||| ||||  ||||||||||||
seq2  CTCAAGGAGACAGGAGGGCCAGTTCAAAATT  1126