BAC Information

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BAC

Clone NameB6Ng01-240G21
Chromosome13 (Build37)
Map Location 21,075,015 - 21,254,242
singlet/doubletdoublet
Overlap geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneTrim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240G21.bB6Ng01-240G21.g
ACCGA050604GA050605
length1,1801,139
definitionB6Ng01-240G21.b B6Ng01-240G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,075,015 - 21,076,196)(21,253,104 - 21,254,242)
sequence
gaattccagaggatggtaggactgctgaggggaggggctggataatagcc
ttggcttcttgagctcaggatcatgctgagggctgaaacttgataaattg
taggagaactgagcttgagatgtcatcattactccaaccaagagctcatc
ccttagaaaatagaccatagaggaggtagttagcacccatctctggaggc
tgtcttagaagcagtggtgcccagagctacctcttttactcatgctacag
tgctccactcttcacatctgagtgttcactagtcctcatgattcatgctt
acagaggacgcagaaactagcaggtccagccctctgtgttcttgactgat
tccatgccctcccctacacccagaagagccaaatatgtcacacaagttct
ttgtcaaggctgaagttgagcttccttgggcttaaggagggtcactttct
ttaagtctagttcatggctggacaggaatcagaaggcatgtgaggccagg
agccatttgtttaatgccccctcagttagcactggtaagcagggacttgt
ccaactaacacttcttttctttaacctaaaaactctcaagttattttcaa
cctttgaagagaattaaagcatggacaatggttctttacaactagaatac
agtgatttccttcctttaatatcaaaggcaggaaccactctaagacacca
cctcacacctgctgggatggccattgtatatataaaaacctaatgaagag
gactgcctaggacatggaaaaatcagagtcatgtaaagaggaatgtaaag
tcatctatccattatagaaggtagcaggataatttctctaaatatgaaaa
cttgaattactgtatgattaaccaatcccacttatgaatatttatttatc
caaggtattaagtacaggttctcaaagagatactggcactcccttgttca
ttacatcatcattcataacaaccaagatgtagaacgaggctgaatgtaca
ccaacatgtaaatggatggagaaaattatatgtaatgcaatgcaatacta
ttcagtcttttaagaggaatcctggccttaccaacgaagaagccccttgc
catctaaagtatccgaattcacagaaagcaaaggatgaacttgtgatgaa
ccaaagacttaggaaggattaagctttttt
gaattctctatgtagactgggctggccttgaattcataaagatcctccct
gcctctcctacctgaatgctactgtcaacacaaccagacacaagtcttat
ttttgtctttttggttgtgagttttagtctttaacagcagagtctagtat
tttaaaggaattatgaaccatttctgcttaagcagttttcttgtgttttt
atattcttttttttgttttgttttgttttttgagttcatttatattctca
ttttattgtttagcgttcttctgtatttgtgaaagggcagtcaggactgt
gacactggactgtgttttataaggtattgttacaggaagcagttaggcaa
cagaaatgggacctttttattatctttgaaaatatatgtgaaattattta
aaagcagagaaattaagtaaaaatcaaagtacaggctcagagtagcaact
atctcaagttatagtagtgaagtgatgaaatagagtcaccatacaataca
gggggaaaaaaagtggcgggagagttgagtctctgcttaaggaacagttg
tcaattagcttgcatcacaagaaaattaaacagggccaagaaagtgtcac
aacatgtggaaactgggaagttgatggttgtgatcagttggactgaatgg
tatagcccgtagctgagtctgatctgatctgtaagacaagagaacctggg
ctagcttgatttaaaagcttttgagatatcttcatgggaataaagaagag
gtaagttctgagaaacatatgagttggagaaaaaagatgcggaacagctg
aaagcctgaaggaagacagtaaatttagaagtaattttattaaagaaaac
aaaaccaataaaaaaaccagcaaggaaaaaaaaggaatgcacgcggttgc
cgaaacccgggatcgaaccagggaccttttagatcttcagtctaacgctc
tccaactgagctattcgccacgcccagcatgctctcacgctgagttctaa
ggactttctcacgtaggtccaggcttgggcgtgactaaagaacttccacg
ctttacagcgttacttaggcaatctagatgtgatgtttcaaacagccttc
tgtattcataagagaaagccaaggagaccattaaatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21075015_21076196
seq2: B6Ng01-240G21.b_44_1223

seq1  GAATTCCAGAGGATGGTAGGACTGCTGAGGGGAGGGGCTGGATAATAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGATGGTAGGACTGCTGAGGGGAGGGGCTGGATAATAGCC  50

seq1  TTGGCTTCTTGAGCTCAGGATCATGCTGAGGGCTGAAACTTGATAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCTTGAGCTCAGGATCATGCTGAGGGCTGAAACTTGATAAATTG  100

seq1  TAGGAGAACTGAGCTTGAGATGTCATCATTACTCCAACCAAGAGCTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAACTGAGCTTGAGATGTCATCATTACTCCAACCAAGAGCTCATC  150

seq1  CCTTAGAAAATAGACCATAGAGGAGGTAGTTAGCACCCATCTCTGGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAAATAGACCATAGAGGAGGTAGTTAGCACCCATCTCTGGAGGC  200

seq1  TGTCTTAGAAGCAGTGGTGCCCAGAGCTACCTCTTTTACTCATGCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGAAGCAGTGGTGCCCAGAGCTACCTCTTTTACTCATGCTACAG  250

seq1  TGCTCCACTCTTCACATCTGAGTGTTCACTAGTCCTCATGATTCATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACTCTTCACATCTGAGTGTTCACTAGTCCTCATGATTCATGCTT  300

seq1  ACAGAGGACGCAGAAACTAGCAGGTCCAGCCCTCTGTGTTCTTGACTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGACGCAGAAACTAGCAGGTCCAGCCCTCTGTGTTCTTGACTGAT  350

seq1  TCCATGCCCTCCCCTACACCCAGAAGAGCCAAATATGTCACACAAGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCCTCCCCTACACCCAGAAGAGCCAAATATGTCACACAAGTTCT  400

seq1  TTGTCAAGGCTGAAGTTGAGCTTCCTTGGGCTTAAGGAGGGTCACTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGGCTGAAGTTGAGCTTCCTTGGGCTTAAGGAGGGTCACTTTCT  450

seq1  TTAAGTCTAGTTCATGGCTGGACAGGAATCAGAAGGCATGTGAGGCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTAGTTCATGGCTGGACAGGAATCAGAAGGCATGTGAGGCCAGG  500

seq1  AGCCATTTGTTTAATGCCCCCTCAGTTAGCACTGGTAAGCAGGGACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTGTTTAATGCCCCCTCAGTTAGCACTGGTAAGCAGGGACTTGT  550

seq1  CCAACTAACACTTCTTTTCTTTAACCTAAAAACTCTCAAGTTATTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAACACTTCTTTTCTTTAACCTAAAAACTCTCAAGTTATTTTCAA  600

seq1  CCTTTGAAGAGAATTAAAGCATGGACAATGGTTCTTTACAACTAGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAGAGAATTAAAGCATGGACAATGGTTCTTTACAACTAGAATAC  650

seq1  AGTGATTTCCTTCCTTTAATATCAAAGGCAGGAACCACTCTAAGACACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTCCTTCCTTTAATATCAAAGGCAGGAACCACTCTAAGACACCA  700

seq1  CCTCACACCTGCTGGGATGGCCATTGTATATATAAAAACCTAATGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACCTGCTGGGATGGCCATTGTATATATAAAAACCTAATGAAGAG  750

seq1  GACTGCCTAGGACATGGAAAAATCAGAGTCATGTAAAGAGGAATGTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTAGGACATGGAAAAATCAGAGTCATGTAAAGAGGAATGTAAAG  800

seq1  TCATCTATCCATTATAGAAGGTAGCAGGATAATTTCTCTAAATATGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATCCATTATAGAAGGTAGCAGGATAATTTCTCTAAATATGAAAA  850

seq1  CTTGAATTACTGTATGATTAACCAATCCCACTTATGAATATTTATTTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTACTGTATGATTAACCAATCCCACTTATGAATATTTATTTATC  900

seq1  CAAGGTATTAAGTACAGGTTCTCAAAGAGATACTGGCACTCCCTTGTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTATTAAGTACAGGTTCTCAAAGAGATACTGGCACTCCCTTGTTCA  950

seq1  TTACATCATCATTCATAACAACCAAGATGTAGAACGAGGCTGAATGTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCATCATTCATAACAACCAAGATGTAGAACGAGGCTGAATGTACA  1000

seq1  CCAACATGTAAATGGATGGAGAAAA-TATATGTAAATGCAATGCAATACT  1049
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CCAACATGTAAATGGATGGAGAAAATTATATGT-AATGCAATGCAATACT  1049

seq1  ATTCAGTCTTTTAAGAAGGGAATCCT-GCCTTACCCAACGAGGAAGCCCC  1098
      ||||||||||||||||  |||||||| |||||| ||||||| ||||||||
seq2  ATTCAGTCTTTTAAGA--GGAATCCTGGCCTTA-CCAACGAAGAAGCCCC  1096

seq1  T--GCATCTAAAGTACCCAAATTCACAG-AAGCAAAGGATGACTTGGTGA  1145
      |   ||||||||||| || ||||||||| |||||||||||||  | ||||
seq2  TTGCCATCTAAAGTATCCGAATTCACAGAAAGCAAAGGATGAACTTGTGA  1146

seq1  TG-ACCAAGGACTAGGGGAAGTGATATAAAGCTTTTTT  1182
      || ||||| ||||  || | |    || ||||||||||
seq2  TGAACCAAAGACTTAGGAAGG----ATTAAGCTTTTTT  1180

seq1: chr13_21253104_21254242
seq2: B6Ng01-240G21.g_69_1207 (reverse)

seq1  GTGATTTAAATTGTCTCCTTGCTTTTCTCTTTATG-ATACAAGAAGCTGT  49
      ||||||| ||| |||||||||  |||||| ||||| |||||  | |||||
seq2  GTGATTT-AATGGTCTCCTTGGCTTTCTC-TTATGAATACAGAAGGCTGT  48

seq1  TTG-AACATCACATCTTAGATTGCCTAAGTAACGCTGTTAAGCGT-GAAG  97
      ||| ||||||||||| |||||||||||||||||||||| |||||| ||||
seq2  TTGAAACATCACATC-TAGATTGCCTAAGTAACGCTGTAAAGCGTGGAAG  97

seq1  TTCTTTGGTCACGCCC-AGCCTGGACCTACGTGAGAAAGTCTTTAGAACT  146
      |||||| ||||||||| |||||||||||||||||||||||| ||||||||
seq2  TTCTTTAGTCACGCCCAAGCCTGGACCTACGTGAGAAAGTCCTTAGAACT  147

seq1  CAGCGTGAGAGCATGCTGGGCGTGGCCGAAATAGCTCAGTTGGGAGAGCG  196
      ||||||||||||||||||||||||||   |||||||||||| ||||||||
seq2  CAGCGTGAGAGCATGCTGGGCGTGGC--GAATAGCTCAGTT-GGAGAGCG  194

seq1  TTAGACTGAAGATCT-AAAGGTCCCTGGTTCGATCCCGGGTTTCGGCAAC  245
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAGACTGAAGATCTAAAAGGTCCCTGGTTCGATCCCGGGTTTCGGCAAC  244

seq1  CGCGTGCATTCCTTTTTTTTCCTTGCTGG-TTTTTTATTGGTTTTGTTTT  294
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGCGTGCATTCCTTTTTTTTCCTTGCTGGTTTTTTTATTGGTTTTGTTTT  294

seq1  CTTTAATAAAATTACTTCTAAATTTACTGTCTTCCTTCAGGCTTTCAGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATAAAATTACTTCTAAATTTACTGTCTTCCTTCAGGCTTTCAGCT  344

seq1  GTTCCGCATCTTTTTTCTCCAACTCATATGTTTCTCAGAACTTACCTCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGCATCTTTTTTCTCCAACTCATATGTTTCTCAGAACTTACCTCTT  394

seq1  CTTTATTCCCATGAAGATATCTCAAAAGCTTTTAAATCAAGCTAGCCCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCCCATGAAGATATCTCAAAAGCTTTTAAATCAAGCTAGCCCAG  444

seq1  GTTCTCTTGTCTTACAGATCAGATCAGACTCAGCTACGGGCTATACCATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTGTCTTACAGATCAGATCAGACTCAGCTACGGGCTATACCATT  494

seq1  CAGTCCAACTGATCACAACCATCAACTTCCCAGTTTCCACATGTTGTGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAACTGATCACAACCATCAACTTCCCAGTTTCCACATGTTGTGAC  544

seq1  ACTTTCTTGGCCCTGTTTAATTTTCTTGTGATGCAAGCTAATTGACAACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGGCCCTGTTTAATTTTCTTGTGATGCAAGCTAATTGACAACT  594

seq1  GTTCCTTAAGCAGAGACTCAACTCTCCCGCCACTTTTTTTCCCCCTGTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAAGCAGAGACTCAACTCTCCCGCCACTTTTTTTCCCCCTGTAT  644

seq1  TGTATGGTGACTCTATTTCATCACTTCACTACTATAACTTGAGATAGTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTGACTCTATTTCATCACTTCACTACTATAACTTGAGATAGTTG  694

seq1  CTACTCTGAGCCTGTACTTTGATTTTTACTTAATTTCTCTGCTTTTAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGAGCCTGTACTTTGATTTTTACTTAATTTCTCTGCTTTTAAAT  744

seq1  AATTTCACATATATTTTCAAAGATAATAAAAAGGTCCCATTTCTGTTGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACATATATTTTCAAAGATAATAAAAAGGTCCCATTTCTGTTGCC  794

seq1  TAACTGCTTCCTGTAACAATACCTTATAAAACACAGTCCAGTGTCACAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTTCCTGTAACAATACCTTATAAAACACAGTCCAGTGTCACAGT  844

seq1  CCTGACTGCCCTTTCACAAATACAGAAGAACGCTAAACAATAAAATGAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGCCCTTTCACAAATACAGAAGAACGCTAAACAATAAAATGAGA  894

seq1  ATATAAATGAACTCAAAAAACAAAACAAAACAAAAAAAAGAATATAAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGAACTCAAAAAACAAAACAAAACAAAAAAAAGAATATAAAAA  944

seq1  CACAAGAAAACTGCTTAAGCAGAAATGGTTCATAATTCCTTTAAAATACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAACTGCTTAAGCAGAAATGGTTCATAATTCCTTTAAAATACT  994

seq1  AGACTCTGCTGTTAAAGACTAAAACTCACAACCAAAAAGACAAAAATAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGCTGTTAAAGACTAAAACTCACAACCAAAAAGACAAAAATAAG  1044

seq1  ACTTGTGTCTGGTTGTGTTGACAGTAGCATTCAGGTAGGAGAGGCAGGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTCTGGTTGTGTTGACAGTAGCATTCAGGTAGGAGAGGCAGGGA  1094

seq1  GGATCTTTATGAATTCAAGGCCAGCCCAGTCTACATAGAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTATGAATTCAAGGCCAGCCCAGTCTACATAGAGAATTC  1139