BAC Information

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BAC

Clone NameB6Ng01-241N01
Chromosome13 (Build37)
Map Location 80,636,855 - 80,756,391
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241N01.bB6Ng01-241N01.g
ACCGA051635GA051636
length1,1791,137
definitionB6Ng01-241N01.b B6Ng01-241N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,755,203 - 80,756,391)(80,636,855 - 80,637,979)
sequence
gaattctttttagaaatcaaatatgaaaaagataacatatagcctacttc
atatattaaaactttgaaagcatatattatgttctcaaaattataatgat
aagaacaataaacccactagaaagcaactgaagaatcataaattttataa
aaattttataatgagtaaaatctttcaaaaatagctttctctgctgtcaa
tgaaccaactgagtaattgaattgttgaactctcaggtataccactgtac
tttaaatttttctagtgaagaagcgattttggaagtttatttttcagaat
gcattattatactgttataaggaaacactccccccccccatagcttctta
atatcactcaaatgtacttttgtaaattgtactctttctggaagaattaa
aataatctactgattctgattctagttacagctgtcacttaatctatttc
tgataaagtgtcatacgtgtgactttgttctttttctcagtttaaaactg
cacaatgttagtgaaatgtttagacaagaaaccttatgaaggaagagtac
attaaaataaatgcaacattatataattttgtgttgtctctacaaatagt
tttaaaataaaggagaatagaattactcatttgacacttcagactattga
aataagccttgctcatacctatagttatgcactcccacggtttactttga
aaaaattctttatgaaatggttggaatctatcataacagttacaagagct
gaaatttctacttttatagcacgtttttctcctgtatctttttctgatgc
tcatcattagtacacagacacaaaccaattttaggatataggtttgagaa
tacatcacaaaatcacgggaactaagatgattgcaaatactaaatgctga
tacacatgcaaaatgctcattgatttcccctaatattttaaaacatttga
acaactagtatgtatggattaaagatcacatttgcttttttctgtctctt
cttttaagtttaatagaactttaatatatacattgctgcttcatgtgcaa
tcaaaatactagcatttattgatatagtgtctttatgcctaaggtgtgat
agcatagaaaaaggcacttatggaattcaacatgtctcacgtccctgtca
actcagcacctggcacttgcgaatttact

gaattctgaaggtgctgctaaactgaaacccactactttgtttggtaatt
atttttaaataaatacttttaaaaacagcctttaacctctacaaagattt
ctacatatcctcatttgaaccactagcaaaattcattttggaaaatatgt
tatactctaacctttaaaatactttcaatcacaatgacacatattttgcc
tactgcagcatcaaaaggtaaagtgtataatatttatgaatatcttctcc
aacttaccaagtatcatatcttcaaggaaacatacagaatacatgtctcc
aaattgaatactatcagaataatggcacaattatactggcaaaactatca
gtactgaaatgtttcctagggaactcaacagacatcatgttttgattatc
agtttattatccaagaatcctgggaatgtgaaggtacccttaaagttatc
tgtttttattctttaacctttaaatgttttattttactatttattatatt
tattttatatttattattatgagtaaaacttaaacaaaatgctattttaa
tgtttctacattaaaattttaataaataagtaaacataataacataaaat
catcttagatgtttgctttaaaaaactgatgcaatggtgactttaggcat
ttttagaaattcaggtatgaattatatatttacattttttctccactcac
ctcctttcaaaccccccataacaccccttctcctaaaatatatggtctct
ccatctttattattgttttatgtgtgttattatatataacacacactata
tacatatatacatgtatatgtatgtatatatatatgtatatacatatata
tatatatatcatacacacatatattcaaaaccaaccttcttagtttagtg
ttgattatacatatatatgactgactgccagaattattactgtctgaaag
aaccctgcaaggacaaaaaatggaggaagaagactaagggaaatgctgtc
cagtgactagcccaaattaggatccatcttagggggaagactccatgggt
ggtgcttaacagaacagaaggcagagcatggctgtccttccacgagggcc
catagccagctgaagagagtaccacatgcgataaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80755203_80756391
seq2: B6Ng01-241N01.b_44_1222 (reverse)

seq1  AGTAAATCTGCAAAGTG-CAGGTGCTGGAGTGTGGACAGAGACTGTAGAC  49
      |||||||  || ||||| ||||||||   | || ||||| |||   ||||
seq2  AGTAAATTCGC-AAGTGCCAGGTGCT---GAGTTGACAGGGACGTGAGAC  46

seq1  ATGTTGAATTCCATTAGTTCCCTTTTCTATGCTATCACAACCTTAAGGCA  99
      |||||||||||||| ||| || |||||||||||||||| ||||| |||||
seq2  ATGTTGAATTCCATAAGTGCCTTTTTCTATGCTATCAC-ACCTT-AGGCA  94

seq1  TAAAGGACACTATATTCATAAATTGCTAGTATTTTGATTGCACATGAAGC  149
      |||| ||||||||||  ||||| |||||||||||||||||||||||||||
seq2  TAAA-GACACTATATCAATAAA-TGCTAGTATTTTGATTGCACATGAAGC  142

seq1  AGCAATGTATAATATTAAAAGTTCTATTAAACTTAAAAGAAGAGACAGAA  199
      |||||||||| ||||| ||||||||||||||||||||||||||||||| |
seq2  AGCAATGTAT-ATATT-AAAGTTCTATTAAACTTAAAAGAAGAGACAG-A  189

seq1  AAAAAGCAAATGTGATCTTTAATCCATACATACTAGTTGTTCAAATGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAATGTGATCTTTAATCCATACATACTAGTTGTTCAAATGTTT  239

seq1  TAAAATATTAGGGGAAATCAATGAGCATTTTGCATGTGTATCAGCATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTAGGGGAAATCAATGAGCATTTTGCATGTGTATCAGCATTTA  289

seq1  GTATTTGCAATCATCTTAGTTCCCCTGATTTTGTGATGTATTCTCAAACC  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTATTTGCAATCATCTTAGTTCCCGTGATTTTGTGATGTATTCTCAAACC  339

seq1  TATATCCTAAAATTGGTTTGTGTCTGTGTACTAATGATGAGCATCAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTAAAATTGGTTTGTGTCTGTGTACTAATGATGAGCATCAGAAA  389

seq1  AAGATACAGGAGAAAAACGTGCTATAAAAGTAGAAATTTCAGCTCTTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAGGAGAAAAACGTGCTATAAAAGTAGAAATTTCAGCTCTTGTA  439

seq1  ACTGTTATGATAGATTCCAACCATTTCATAAAGAATTTTTTCAAAGTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATGATAGATTCCAACCATTTCATAAAGAATTTTTTCAAAGTAAA  489

seq1  CCGTGGGAGTGCATAACTATAGGTATGAGCAAGGCTTATTTCAATAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGAGTGCATAACTATAGGTATGAGCAAGGCTTATTTCAATAGTCT  539

seq1  GAAGTGTCAAATGAGTAATTCTATTCTCCTTTATTTTAAAACTATTTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCAAATGAGTAATTCTATTCTCCTTTATTTTAAAACTATTTGTA  589

seq1  GAGACAACACAAAATTATATAATGTTGCATTTATTTTAATGTACTCTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAACACAAAATTATATAATGTTGCATTTATTTTAATGTACTCTTCC  639

seq1  TTCATAAGGTTTCTTGTCTAAACATTTCACTAACATTGTGCAGTTTTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGGTTTCTTGTCTAAACATTTCACTAACATTGTGCAGTTTTAAA  689

seq1  CTGAGAAAAAGAACAAAGTCACACGTATGACACTTTATCAGAAATAGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAAAGAACAAAGTCACACGTATGACACTTTATCAGAAATAGATT  739

seq1  AAGTGACAGCTGTAACTAGAATCAGAATCAGTAGATTATTTTAATTCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAGCTGTAACTAGAATCAGAATCAGTAGATTATTTTAATTCTTC  789

seq1  CAGAAAGAGTACAATTTACAAAAGTACATTTGAGTGATATTAAGAAGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAGTACAATTTACAAAAGTACATTTGAGTGATATTAAGAAGCTA  839

seq1  TGGGGGGGGGGAGTGTTTCCTTATAACAGTATAATAATGCATTCTGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGGGAGTGTTTCCTTATAACAGTATAATAATGCATTCTGAAAA  889

seq1  ATAAACTTCCAAAATCGCTTCTTCACTAGAAAAATTTAAAGTACAGTGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTCCAAAATCGCTTCTTCACTAGAAAAATTTAAAGTACAGTGGT  939

seq1  ATACCTGAGAGTTCAACAATTCAATTACTCAGTTGGTTCATTGACAGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAGAGTTCAACAATTCAATTACTCAGTTGGTTCATTGACAGCAG  989

seq1  AGAAAGCTATTTTTGAAAGATTTTACTCATTATAAAATTTTTATAAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTATTTTTGAAAGATTTTACTCATTATAAAATTTTTATAAAATT  1039

seq1  TATGATTCTTCAGTTGCTTTCTAGTGGGTTTATTGTTCTTATCATTATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCTTCAGTTGCTTTCTAGTGGGTTTATTGTTCTTATCATTATAA  1089

seq1  TTTTGAGAACATAATATATGCTTTCAAAGTTTTAATATATGAAGTAGGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAACATAATATATGCTTTCAAAGTTTTAATATATGAAGTAGGCT  1139

seq1  ATATGTTATCTTTTTCATATTTGATTTCTAAAAAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTATCTTTTTCATATTTGATTTCTAAAAAGAATTC  1179


seq1: chr13_80636855_80637979
seq2: B6Ng01-241N01.g_66_1202

seq1  GAATTCTGAAGGTGCTGCTAAACTGAAACCCACTACTTTGTTTGGTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGGTGCTGCTAAACTGAAACCCACTACTTTGTTTGGTAATT  50

seq1  ATTTTTAAATAAATACTTTTAAAAACAGCCTTTAACCTCTACAAAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATAAATACTTTTAAAAACAGCCTTTAACCTCTACAAAGATTT  100

seq1  CTACATATCCTCATTTGAACCACTAGCAAAATTCATTTTGGAAAATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATCCTCATTTGAACCACTAGCAAAATTCATTTTGGAAAATATGT  150

seq1  TATACTCTAACCTTTAAAATACTTTCAATCACAATGACACATATTTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTAACCTTTAAAATACTTTCAATCACAATGACACATATTTTGCC  200

seq1  TACTGCAGCATCAAAAGGTAAAGTGTATAATATTTATGAATATCTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAGCATCAAAAGGTAAAGTGTATAATATTTATGAATATCTTCTCC  250

seq1  AACTTACCAAGTATCATATCTTCAAGGAAACATACAGAATACATGTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCAAGTATCATATCTTCAAGGAAACATACAGAATACATGTCTCC  300

seq1  AAATTGAATACTATCAGAATAATGGCACAATTATACTGGCAAAACTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATACTATCAGAATAATGGCACAATTATACTGGCAAAACTATCA  350

seq1  GTACTGAAATGTTTCCTAGGGAACTCAACAGACATCATGTTTTGATTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAATGTTTCCTAGGGAACTCAACAGACATCATGTTTTGATTATC  400

seq1  AGTTTATTATCCAAGAATCCTGGGAATGTGAAGGTACCCTTAAAGTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTATCCAAGAATCCTGGGAATGTGAAGGTACCCTTAAAGTTATC  450

seq1  TGTTTTTATTCTTTAACCTTTAAATGTTTTATTTTACTATTTATTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTCTTTAACCTTTAAATGTTTTATTTTACTATTTATTATATT  500

seq1  TATTTTATATTTATTATTATGAGTAAAACTTAAACAAAATGCTATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATTTATTATTATGAGTAAAACTTAAACAAAATGCTATTTTAA  550

seq1  TGTTTCTACATTAAAATTTTAATAAATAAGTAAACATAATAACATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTACATTAAAATTTTAATAAATAAGTAAACATAATAACATAAAAT  600

seq1  CATCTTAGATGTTTGCTTTAAAAAACTGATGCAATGGTGACTTTAGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGATGTTTGCTTTAAAAAACTGATGCAATGGTGACTTTAGGCAT  650

seq1  TTTTAGAAATTCAGGTATGAATTATATATTTACATTTTTTCTCCACTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAATTCAGGTATGAATTATATATTTACATTTTTTCTCCACTCAC  700

seq1  CTCCTTTCAAACCCCCCATAACACCCCTTCTCCTAAAATATATGGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCAAACCCCCCATAACACCCCTTCTCCTAAAATATATGGTCTCT  750

seq1  CCATCTTTATTATTGTTTTATGTGTGTTATTATATATAACACACACTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTATTATTGTTTTATGTGTGTTATTATATATAACACACACTATA  800

seq1  TACATATATACATGTATATGTATGTATATATATATGTATATACATATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATACATGTATATGTATGTATATATATATGTATATACATATATA  850

seq1  TATATATATCATACACACATATATTCAAAACCAACCTTCTTAGTTTAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATCATACACACATATATTCAAAACCAACCTTCTTAGTTTAGTG  900

seq1  TTGATTATACATATATATGACTGACTGCCAGAATTATTACTGTCTGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATACATATATATGACTGACTGCCAGAATTATTACTGTCTGAAAG  950

seq1  AA-CCTGCAAGGAC-AAAAATGGA-GAAG-AGACTAAGGGAAATGCTGTC  996
      || ||||||||||| ||||||||| |||| ||||||||||||||||||||
seq2  AACCCTGCAAGGACAAAAAATGGAGGAAGAAGACTAAGGGAAATGCTGTC  1000

seq1  CAGTGACTAGCCCAAATTAGGATCCATCTTAAGGGG-AGACTCCATGG--  1043
      ||||||||||||||||||||||||||||||| |||| |||||||||||  
seq2  CAGTGACTAGCCCAAATTAGGATCCATCTTAGGGGGAAGACTCCATGGGT  1050

seq1  TGTGCTT-ACAG-ACAGAA-GCAGAGCATGGCTG-CCCTCCACGAGGCCC  1089
       |||||| |||| |||||| |||||||||||||| || ||||||||| ||
seq2  GGTGCTTAACAGAACAGAAGGCAGAGCATGGCTGTCCTTCCACGAGGGCC  1100

seq1  AATAAGCAGCTGAA-AGAGT--CACATGCAGATACACCC  1125
       |||  |||||||| |||||  ||||||| |||| ||||
seq2  CATAGCCAGCTGAAGAGAGTACCACATGC-GATA-ACCC  1137


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