BAC Information

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BAC

Clone NameB6Ng01-241N14
Chromosome13 (Build37)
Map Location 112,037,313 - 112,218,539
singlet/doubletdoublet
Overlap gene4732495G21Rik, LOC100040640, EG621953, Gpbp1
Upstream geneRab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159
Downstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241N14.bB6Ng01-241N14.g
ACCGA051661GA051662
length1,096946
definitionB6Ng01-241N14.b B6Ng01-241N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,037,313 - 112,038,405)(112,217,601 - 112,218,539)
sequence
gaattcaaaacctccatgggttttgtacatatttaaattttttaatgttt
ttagaatatcatctaagcctaagcaggcaatggaggaaccccaatcttcg
tgctgaggactcagccatgatctgactgcagagagccatccagcatccac
accacattttatttttactgtctttttactgtctcctggccttggtgaca
taaggaaaggaaaggatgccttcagcaggtagatacacttcctctttaag
tgctggtcgccttttctctgaaccttccaccagagtcacctgtccactca
tgtctccctatcagtagattatatcctgccttgatacaagcaaatgggag
ctaagaaagctatcagggggttttaacagtcccagatacctgagacagtt
ccctgcctttgtctccttaagtcccagggaaatcgaatactttggaaaac
aaacaacaacagagaaaggaagccccacaaaggaacattgaattgactca
taccgtgtcaactacggttttcccctagaagtagacagcttcctaaactg
aattaactttctcgtcctgtgtcatcagccttctgagtcccttaccaagg
acagcacatgttcatagcatcagaacactctgtacaagaagaaaggctgt
gtgtgtcagtatgtgacaaccctagtcccgttctgtcaatccttcgagtg
actggtagatgtacatgaaaacatacaagaaattgtctgtgacacttatg
cagtcaccaatgcagccaagttcaccagaatgaaaaataagtacagacca
ctacaagctacagacatactatttttggtttgggcgtcttatgacagacc
atatggattaaattcacctttaaggcccatgagccctgctcagcaatcta
gctgcatgcacagaattggagatctgcaaacccctccagaatatgactca
gagtgcaatgtgtgtgttccccagctctcgggtcgaagttatccctgagc
ccgggcttaccttctccagtggtgtgactattggagcctttctgctcatt
gggatcctctctcatgtttgactttggaacctctagactcagtggt
gaattcctaaatgtaatgaaagtgtcatgtttaaggagctattttaagaa
aatgctttaaaatgttagatttttctgggggatgtataagcttatagaaa
atataaggaataaaagacttggagctcaggggatgggttacttggtaaag
tgattgctgtgcaagcacaaagagccactctctaccattttgaacacatc
catttctaatgtccctagccaccatacttataaatatgtctggtccctct
ctgaaaaatgtttcttctctatttaaagttctactcttacgtcacacaat
ttatgagccaatatcatcttatctgccacaaacatcacacaaaatcatct
gtcaagaatgccaatgaaaacaaaatctgtatgtgtatactggtacacac
ctgtgtacagttgtgtgtgtgtgtgtgtcaatgcatttggggggggtggt
aaatgtccatgtcagttatcttcctcagttagtctccacatgattcagtc
attgaatgtgaggcctattactaaactggaagttctgcctgtaacatgtg
ggtggcaaaagaatgaagactgaatttaatgccagcctgaactaccaagt
catctatagctgaaaggattatatcaagacactatcagtttgcaggatta
cagcttgtactggagagatgttaggtaacatggttttgagaatataaaat
acctgagttacaagcatcaggatttttggaattcctaaatgtaatgaaag
tgtcatgtttaaggagctattttgggagacagggtttctctgagtagccc
tgactgtttttggaacttactctgtagaccaggctggcctcaaacttaga
aatccgccctgcctctgcctcccaagttgctgggattaaaggcgtgcgcc
aacacttttttggttcctttaggcatggaaatgaagagtatcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112037313_112038405
seq2: B6Ng01-241N14.b_49_1144

seq1  GAATTCAAAACCTCCATGGGTTTTGTACATATTTAAATTTTTTAATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCTCCATGGGTTTTGTACATATTTAAATTTTTTAATGTTT  50

seq1  TTAGAATATCATCTAAGCCTAAGCAGGCAATGGAGGAACCCCAATCTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATCATCTAAGCCTAAGCAGGCAATGGAGGAACCCCAATCTTCG  100

seq1  TGCTGAGGACTCAGCCATGATCTGACTGCAGAGAGCCATCCAGCATCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGACTCAGCCATGATCTGACTGCAGAGAGCCATCCAGCATCCAC  150

seq1  ACCACATTTTATTTTTACTGTCTTTTTACTGTCTCCTGGCCTTGGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTTTATTTTTACTGTCTTTTTACTGTCTCCTGGCCTTGGTGACA  200

seq1  TAAGGAAAGGAAAGGATGCCTTCAGCAGGTAGATACACTTCCTCTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAGGAAAGGATGCCTTCAGCAGGTAGATACACTTCCTCTTTAAG  250

seq1  TGCTGGTCGCCTTTTCTCTGAACCTTCCACCAGAGTCACCTGTCCACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCGCCTTTTCTCTGAACCTTCCACCAGAGTCACCTGTCCACTCA  300

seq1  TGTCTCCCTATCAGTAGATTATATCCTGCCTTGATACAAGCAAATGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCTATCAGTAGATTATATCCTGCCTTGATACAAGCAAATGGGAG  350

seq1  CTAAGAAAGCTATCAGGGGGTTTTAACAGTCCCAGATACCTGAGACAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAGCTATCAGGGGGTTTTAACAGTCCCAGATACCTGAGACAGTT  400

seq1  CCCTGCCTTTGTCTCCTTAAGTCCCAGGGAAATCGAATACTTTGGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTTTGTCTCCTTAAGTCCCAGGGAAATCGAATACTTTGGAAAAC  450

seq1  AAACAACAACAGAGAAAGGAAGCCCCACAAAGGAACATTGAATTGACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAACAGAGAAAGGAAGCCCCACAAAGGAACATTGAATTGACTCA  500

seq1  TACCGTGTCAACTACGGTTTTCCCCTAGAAGTAGACAGCTTCCTAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTGTCAACTACGGTTTTCCCCTAGAAGTAGACAGCTTCCTAAACTG  550

seq1  AATTAACTTTCTCGTCCTGTGTCATCAGCCTTCTGAGTCCCTTACCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTTTCTCGTCCTGTGTCATCAGCCTTCTGAGTCCCTTACCAAGG  600

seq1  ACAGCACATGTTCATAGCATCAGAACACTCTGTACAAGAAGAAAGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACATGTTCATAGCATCAGAACACTCTGTACAAGAAGAAAGGCTGT  650

seq1  GTGTGTCAGTATGTGACAACCCTAGTCCCGTTCTGTCAATCCTT-GAGTG  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGTGTCAGTATGTGACAACCCTAGTCCCGTTCTGTCAATCCTTCGAGTG  700

seq1  ACTGGTAGATGTACATGAAAACATACAAGAAATTGTCTGTGACACTTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGATGTACATGAAAACATACAAGAAATTGTCTGTGACACTTATG  750

seq1  CAGTCACCAATGCAGCCAAGTTCACCAGAATGAAAAATAAGTACAGACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACCAATGCAGCCAAGTTCACCAGAATGAAAAATAAGTACAGACCA  800

seq1  CTACAAGCTACAGACATACTATTTTTGGTTTGGGCGTCTTATGACAGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCTACAGACATACTATTTTTGGTTTGGGCGTCTTATGACAGACC  850

seq1  ATATGGATTAAATTCACCTTTAAAGGCCCATGAGCCCTGCTCAGCAATCT  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATGGATTAAATTCACCTTT-AAGGCCCATGAGCCCTGCTCAGCAATCT  899

seq1  AGCTGCATGCACAGAATTGGAGATCTGCAAA-CCCTCCAGAATATGACTC  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTGCATGCACAGAATTGGAGATCTGCAAACCCCTCCAGAATATGACTC  949

seq1  AGAGTGCAATGTGTGTGTTCCCCAGCTCTC-GGTCG-AGTTATCCCTGAG  996
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AGAGTGCAATGTGTGTGTTCCCCAGCTCTCGGGTCGAAGTTATCCCTGAG  999

seq1  CCC-GGCTTACCTTCTCCAGTGGTGTGACTATTGGAGCCTTTCTGCTCAT  1045
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCTTACCTTCTCCAGTGGTGTGACTATTGGAGCCTTTCTGCTCAT  1049

seq1  TGGGATTCCTTCTCTTCATG-TTGACTTTG--ACCTCTAGACTTCAGTGG  1092
      ||||||  | |||| ||||| |||||||||  |||||||||| |||||||
seq2  TGGGAT--CCTCTC-TCATGTTTGACTTTGGAACCTCTAGAC-TCAGTGG  1095

seq1  T  1093
      |
seq2  T  1096

seq1: chr13_112217601_112218539
seq2: B6Ng01-241N14.g_68_1013 (reverse)

seq1  TGCTGAT-CTCTTCATTTCCATGACCTAAAGTAAC--AAAAAGTGGTGGC  47
      ||||||| ||||||||||||||| ||||||| |||  |||||||| ||||
seq2  TGCTGATACTCTTCATTTCCATG-CCTAAAGGAACCAAAAAAGTGTTGGC  49

seq1  GCACGCCTTTAATCCCAGC-ACTTGGGAGGCAGAGGCA-GGCGGATTTCT  95
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  GCACGCCTTTAATCCCAGCAACTTGGGAGGCAGAGGCAGGGCGGATTTCT  99

seq1  AAGTTCGAGGCCAGCCTGGTCTACAGAGTAAGTTCC-AAAACAGTCAGGG  144
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTTTGAGGCCAGCCTGGTCTACAGAGTAAGTTCCAAAAACAGTCAGGG  149

seq1  CTACTCAGAGAAACCCTGTCT-CCAAAATAGCTCCTTAAACATGACACTT  193
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTACTCAGAGAAACCCTGTCTCCCAAAATAGCTCCTTAAACATGACACTT  199

seq1  TCATTACATTTAGGAATTCC-AAAATCCTGATGCTTGTAACTCAGGTATT  242
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCATTACATTTAGGAATTCCAAAAATCCTGATGCTTGTAACTCAGGTATT  249

seq1  TTATATTCTCAAAACCATGTTACCTAACATCTCTCCAGTACAAGCTGTAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTCAAAACCATGTTACCTAACATCTCTCCAGTACAAGCTGTAA  299

seq1  TCCTGCAAACTGATAGTGTCTTGATATAATCCTTTCAGCTATAGATGACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAACTGATAGTGTCTTGATATAATCCTTTCAGCTATAGATGACT  349

seq1  TGGTAGTTCAGGCTGGCATTAAATTCAGTCTTCATTCTTTTGCCACCCAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTCAGGCTGGCATTAAATTCAGTCTTCATTCTTTTGCCACCCAC  399

seq1  ATGTTACAGGCAGAACTTCCAGTTTAGTAATAGGCCTCACATTCAATGAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAGGCAGAACTTCCAGTTTAGTAATAGGCCTCACATTCAATGAC  449

seq1  TGAATCATGTGGAGACTAACTGAGGAAGATAACTGACATGGACATTTACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGTGGAGACTAACTGAGGAAGATAACTGACATGGACATTTACC  499

seq1  ACCCCCCCCAAATGCATTGACACACACACACACACAACTGTACACAGGTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCAAATGCATTGACACACACACACACACAACTGTACACAGGTG  549

seq1  TGTACCAGTATACACATACAGATTTTGTTTTCATTGGCATTCTTGACAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGTATACACATACAGATTTTGTTTTCATTGGCATTCTTGACAGA  599

seq1  TGATTTTGTGTGATGTTTGTGGCAGATAAGATGATATTGGCTCATAAATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTGTGATGTTTGTGGCAGATAAGATGATATTGGCTCATAAATT  649

seq1  GTGTGACGTAAGAGTAGAACTTTAAATAGAGAAGAAACATTTTTCAGAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACGTAAGAGTAGAACTTTAAATAGAGAAGAAACATTTTTCAGAGA  699

seq1  GGGACCAGACATATTTATAAGTATGGTGGCTAGGGACATTAGAAATGGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAGACATATTTATAAGTATGGTGGCTAGGGACATTAGAAATGGAT  749

seq1  GTGTTCAAAATGGTAGAGAGTGGCTCTTTGTGCTTGCACAGCAATCACTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAAATGGTAGAGAGTGGCTCTTTGTGCTTGCACAGCAATCACTT  799

seq1  TACCAAGTAACCCATCCCCTGAGCTCCAAGTCTTTTATTCCTTATATTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGTAACCCATCCCCTGAGCTCCAAGTCTTTTATTCCTTATATTTT  849

seq1  CTATAAGCTTATACATCCCCCAGAAAAATCTAACATTTTAAAGCATTTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCTTATACATCCCCCAGAAAAATCTAACATTTTAAAGCATTTTC  899

seq1  TTAAAATAGCTCCTTAAACATGACACTTTCATTACATTTAGGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGCTCCTTAAACATGACACTTTCATTACATTTAGGAATTC  946