BAC Information

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BAC

Clone NameB6Ng01-241N17
Chromosome13 (Build37)
Map Location 70,163,020 - 70,316,466
singlet/doubletdoublet
Overlap geneLOC100042291
Upstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241N17.bB6Ng01-241N17.g
ACCGA051665GA051666
length1,1351,080
definitionB6Ng01-241N17.b B6Ng01-241N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,315,322 - 70,316,466)(70,163,020 - 70,164,105)
sequence
gaattctgtggcttagaggtctcttaccccccaaccccttcgtctcttag
tttgcatgcacattcttgaaaatgtacagtgacacctttaccagcatccc
acaaagggatttgttcagaattgggtagaaaactgatacaggattctctg
gtctagggaacattagcagtctctttgtcatgtgttgttgaacctggaga
ctcttcattccttgtcttgagccagttttcccacttgaccgtaagactgg
ttgtgtcctgaaatgcaatctgccagaaaagtcagctggtcatgtggacc
tgaggtgattttggcaaggaagccatgtctgcctcatggcttctctccag
cctctgcccctccttcttccctccagttttagggtttattctctctacct
tgagcaattacctattagtgtatcatattctttcctcatgctctcagccc
aaactcaactctaactgttctgtgccagcagttatggacgtaactttgct
caacacattagcaatagaatgctggtcttttatcatcttctacatccaag
gcctcccccattttgtctgttgccagctgtgacagactatgggtgccatc
atactagccctgacactaaaggaacatggggccaagaagtacaggagaca
ggtggtaagtcagacatcactttttcttgaccatctgtgaacaagaaaaa
tctccaagatgcattttgctggagtggaagcaaatggttctttttagaac
cagtcagaatcacaccaattttttttttttattgtgagttacatggaggc
tcatttccccttaggatagagtttgatctcacttccagctcaagaacatt
taatatttaataaaaatagtatttgtttttagtcttaatctaaagtatgt
gaatgccggtctcacttcaagaagacattgaaatttgaaggcatgcatgt
gagatttatagaacccactttactatctgatagatcaaatttcaaattgt
atgacatacagcatccagtatatactcaaagtaggcatataaagatgggt
aaattgaaaagagatgaggtttgtaaatgcaacaacatgcccatggatca
cccaatccactcattatttttctgagaatgccatt

gaattctttgtttagctctgagccccatttttaaatgggttatttgaatt
tctagagtccagcttcttgagctctttgtatatatacctgccgtgtggct
gacctccatattggattgattcagatggtgtgactggcttctctcccctc
ccttccaagtctcctcttctaagtagctggtgagatctgcagcttgtatg
cactgggattttgctttttaaactctaataaaattcccttgggcttccaa
aaataaaataaaaataatattctcctctatggatgcagtggattttgttt
atctctacatgcactgctcgattttttgagaggccatttcttctctttgc
tgttttaaatgtcgctgctgtgtgtgtgtgtgtgtgtgtgtgtacctttc
ctgtgaatatatttcaatttttgtaaggtacacagaaattttacgttcaa
ctttaggccttataactgcttaccatgggggtggggaagagttttaccac
attcagttgttaggatagcgtattttccactgctgtagagctatcctaaa
tgagtgtcaaatatagttctgatttgtagttccttgactaaaaatgatgt
tacacatcttgcgtgtgcgtatctgataaatcttttccagataaatgtct
gtttgaatcttttgcctgagttctaacttgcctatttgtctttttattgt
tgaatttaaatattctgtagacttaccagggatataagacttatgctgaa
tctatgattttcaaaaatttcccccactctctaagttgtcttttgagttc
cccaacagcatcttctgatgaaggaaagcttgcatctttgcagaaagcat
cgggtgactttttctagagaggcttgcatctgtgttatgacttgttttat
tatcaatcccctagggatttatcttaatttagcccattgagttaaattta
aatattaaaggatagatttgttgactaacaactgagttgtgaaggttcac
agattgtttgtattatgttagaattcttctcaagtacagaagatgagacc
ttcttctcacttggtgactgtgactctggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70315322_70316466
seq2: B6Ng01-241N17.b_46_1180 (reverse)

seq1  AATGGCA-TCTCAG-AAAATAATGAGTGGATTTGGGTGATCCATGGGGCA  48
      ||||||| |||||| ||||||||||||||| ||||||||||||| |||||
seq2  AATGGCATTCTCAGAAAAATAATGAGTGGA-TTGGGTGATCCAT-GGGCA  48

seq1  TGTTGTGCCATTTTAACAAACCTTCATCTCTTTTTCAAATTTACCCCATT  98
      ||||||  |||||  ||||||| |||||||||||   |||||||||   |
seq2  TGTTGTTGCATTT--ACAAACC-TCATCTCTTTT--CAATTTACCC--AT  91

seq1  CTTTTATTATGCCTACTTTGAGTATATTACTGGATGCTGTATGTCATAC-  147
      ||||   ||||||||||||||||||| |||||||||||||||||||||| 
seq2  CTTT--ATATGCCTACTTTGAGTATA-TACTGGATGCTGTATGTCATACA  138

seq1  ATTTGAAATTTTGATTCTTATCAGATAGTAAAGTTGGTTCTATAAATCTC  197
      |||||||| ||||||   |||||||||||||||| |||||||||||||||
seq2  ATTTGAAA-TTTGAT--CTATCAGATAGTAAAGTGGGTTCTATAAATCTC  185

seq1  ACATGCATGCCTTCAAATTTCAATGTCTTCTTGAAGTGAGACCGGCATTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGCCTTCAAATTTCAATGTCTTCTTGAAGTGAGACCGGCATTC  235

seq1  ACATACTTTAGATTAAGACTAAAAACAAATACTATTTTTATTAAATATTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTTAGATTAAGACTAAAAACAAATACTATTTTTATTAAATATTA  285

seq1  AATGTTCTTGAGCTGGAAGTGAGATCAAACTCTATCCTAAGGGGAAATGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTGAGCTGGAAGTGAGATCAAACTCTATCCTAAGGGGAAATGA  335

seq1  GCCTCCATGTAACTCACAAT--AAAAAAAAAATTGGTGTGATTCTGACTG  395
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GCCTCCATGTAACTCACAATAAAAAAAAAAAATTGGTGTGATTCTGACTG  385

seq1  GTTCTAAAAAGAACCATTTGCTTCCACTCCAGCAAAATGCATCTTGGAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAAAAGAACCATTTGCTTCCACTCCAGCAAAATGCATCTTGGAGA  435

seq1  TTTTTCTTGTTCACAGATGGTCAAGAAAAAGTGATGTCTGACTTACCACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTTCACAGATGGTCAAGAAAAAGTGATGTCTGACTTACCACC  485

seq1  TGTCTCCTGTACTTCTTGGCCCCATGTTCCTTTAGTGTCAGGGCTAGTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTGTACTTCTTGGCCCCATGTTCCTTTAGTGTCAGGGCTAGTAT  535

seq1  GATGGCACCCATAGTCTGTCACAGCTGGCAACAGACAAAATGGGGGAGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACCCATAGTCTGTCACAGCTGGCAACAGACAAAATGGGGGAGGC  585

seq1  CTTGGATGTAGAAGATGATAAAAGACCAGCATTCTATTGCTAATGTGTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGTAGAAGATGATAAAAGACCAGCATTCTATTGCTAATGTGTTG  635

seq1  AGCAAAGTTACGTCCATAACTGCTGGCACAGAACAGTTAGAGTTGAGTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTTACGTCCATAACTGCTGGCACAGAACAGTTAGAGTTGAGTTT  685

seq1  GGGCTGAGAGCATGAGGAAAGAATATGATACACTAATAGGTAATTGCTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGAGCATGAGGAAAGAATATGATACACTAATAGGTAATTGCTCA  735

seq1  AGGTAGAGAGAATAAACCCTAAAACTGGAGGGAAGAAGGAGGGGCAGAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGAGAATAAACCCTAAAACTGGAGGGAAGAAGGAGGGGCAGAGG  785

seq1  CTGGAGAGAAGCCATGAGGCAGACATGGCTTCCTTGCCAAAATCACCTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGAAGCCATGAGGCAGACATGGCTTCCTTGCCAAAATCACCTCA  835

seq1  GGTCCACATGACCAGCTGACTTTTCTGGCAGATTGCATTTCAGGACACAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACATGACCAGCTGACTTTTCTGGCAGATTGCATTTCAGGACACAA  885

seq1  CCAGTCTTACGGTCAAGTGGGAAAACTGGCTCAAGACAAGGAATGAAGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTACGGTCAAGTGGGAAAACTGGCTCAAGACAAGGAATGAAGAG  935

seq1  TCTCCAGGTTCAACAACACATGACAAAGAGACTGCTAATGTTCCCTAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTTCAACAACACATGACAAAGAGACTGCTAATGTTCCCTAGAC  985

seq1  CAGAGAATCCTGTATCAGTTTTCTACCCAATTCTGAACAAATCCCTTTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATCCTGTATCAGTTTTCTACCCAATTCTGAACAAATCCCTTTGT  1035

seq1  GGGATGCTGGTAAAGGTGTCACTGTACATTTTCAAGAATGTGCATGCAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTGGTAAAGGTGTCACTGTACATTTTCAAGAATGTGCATGCAAA  1085

seq1  CTAAGAGACGAAGGGGTTGGGGGGTAAGAGACCTCTAAGCCACAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGACGAAGGGGTTGGGGGGTAAGAGACCTCTAAGCCACAGAATTC  1135


seq1: chr13_70163020_70164105
seq2: B6Ng01-241N17.g_67_1146

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAAATGGGTTATTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAAATGGGTTATTTGAATT  50

seq1  TCTAGAGTCCAGCTTCTTGAGCTCTTTGTATATATACCTGCCGTGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTCCAGCTTCTTGAGCTCTTTGTATATATACCTGCCGTGTGGCT  100

seq1  GACCTCCATATTGGATTGATTCAGATGGTGTGACTGGCTTCTCTCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCATATTGGATTGATTCAGATGGTGTGACTGGCTTCTCTCCCCTC  150

seq1  CCTTCCAAGTCTCCTCTTCTAAGTAGCTGGTGAGATCTGCAGCTTGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAGTCTCCTCTTCTAAGTAGCTGGTGAGATCTGCAGCTTGTATG  200

seq1  CACTGGGATTTTGCTTTTTAAACTCTAATAAAATTCCCTTGGGCTTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATTTTGCTTTTTAAACTCTAATAAAATTCCCTTGGGCTTCCAA  250

seq1  AAATAAAATAAAAATAATATTCTCCTCTATGGATGCAGTGGATTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAAAATAATATTCTCCTCTATGGATGCAGTGGATTTTGTTT  300

seq1  ATCTCTACATGCACTGCTCGATTTTTTGAGAGGCCATTTCTTCTCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACATGCACTGCTCGATTTTTTGAGAGGCCATTTCTTCTCTTTGC  350

seq1  TGTTTTAAATGTCGCTGCTGTGTGTGTGTGTGTGTGTGTGTGTACCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAATGTCGCTGCTGTGTGTGTGTGTGTGTGTGTGTGTACCTTTC  400

seq1  CTGTGAATATATTTCAATTTTTGTAAGGTACACAGAAATTTTACGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATATATTTCAATTTTTGTAAGGTACACAGAAATTTTACGTTCAA  450

seq1  CTTTAGGCCTTATAACTGCTTACCATGGGGGTGGGGAAGAGTTTTACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGCCTTATAACTGCTTACCATGGGGGTGGGGAAGAGTTTTACCAC  500

seq1  ATTCAGTTGTTAGGATAGCGTATTTTCCACTGCTGTAGAGCTATCCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTGTTAGGATAGCGTATTTTCCACTGCTGTAGAGCTATCCTAAA  550

seq1  TGAGTGTCAAATATAGTTCTGATTTGTAGTTCCTTGACTAAAAATGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCAAATATAGTTCTGATTTGTAGTTCCTTGACTAAAAATGATGT  600

seq1  TACACATCTTGCGTGTGCGTATCTGATAAATCTTTTCCAGATAAATGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCTTGCGTGTGCGTATCTGATAAATCTTTTCCAGATAAATGTCT  650

seq1  GTTTGAATCTTTTGCCTGAGTTCTAACTTGCCTATTTGTCTTTTTATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATCTTTTGCCTGAGTTCTAACTTGCCTATTTGTCTTTTTATTGT  700

seq1  TGAATTTAAATATTCTGTAGACTTACCAGGGATATAAGACTTATGCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAAATATTCTGTAGACTTACCAGGGATATAAGACTTATGCTGAA  750

seq1  TCTATGATTTTCAAAAATTTCCCCCACTCTCTAAGTTGTCTTTTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATTTTCAAAAATTTCCCCCACTCTCTAAGTTGTCTTTTGAGTTC  800

seq1  CCCAACAGCATCTTCTGATGAAGGAAAGCTTGCATCTTTGCAGAAAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGCATCTTCTGATGAAGGAAAGCTTGCATCTTTGCAGAAAGCAT  850

seq1  CGGGTGACTTTTTCTAGAGAGGCTTGCATCTGTGGTTATGAACTTGTTTT  900
      ||||||||||||||||||||||||||||||||| |||||| ||||| |||
seq2  CGGGTGACTTTTTCTAGAGAGGCTTGCATCTGT-GTTATG-ACTTG-TTT  897

seq1  TATTATCAATCCCCTAGGGATATATCTTTAATTTAGCCCAATGAGTTAAA  950
      ||||||||||||||||||||| |||| ||||||||||||| |||||||||
seq2  TATTATCAATCCCCTAGGGATTTATC-TTAATTTAGCCCATTGAGTTAAA  946

seq1  -TTAAATATTAAGGGATAGATTTTGTTGACTAAC-ACTGAGTTGTGAAGG  998
       ||||||||||| ||||||| ||||||||||||| |||||||||||||||
seq2  TTTAAATATTAAAGGATAGA-TTTGTTGACTAACAACTGAGTTGTGAAGG  995

seq1  TTCACAGATTG-TTGTAATATGTAAGATTCTTTTCTTC-CAAGTACCAGA  1046
      ||||||||||| ||||| ||||| |||     |||||| |||||||   |
seq2  TTCACAGATTGTTTGTATTATGTTAGA----ATTCTTCTCAAGTACAGAA  1041

seq1  GATGAGACCTCCTTCTCACTTGGTGACTGGTGACTCTGGT  1086
      |||||||||| ||||||||||||||||| |||||||||||
seq2  GATGAGACCTTCTTCTCACTTGGTGACT-GTGACTCTGGT  1080


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