BAC Information

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BAC

Clone NameB6Ng01-241P16
Chromosome13 (Build37)
Map Location 108,071,193 - 108,237,531
singlet/doubletdoublet
Overlap geneLOC100040350, LOC100040366, Apoo
Upstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
Downstream geneAI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241P16.bB6Ng01-241P16.g
ACCGA051752GA051753
length1261,068
definitionB6Ng01-241P16.b B6Ng01-241P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,237,406 - 108,237,531)(108,071,193 - 108,072,241)
sequence
ttcaacatataacacttcgttgtatgaactacaaatcaggacacagcagt
tccaaaagaaaagacttgtgccctgtccccaaattaggatggaggagaaa
ggagggagaaagggagaaagggggaa
gaattccataactgtctcatatatttggttcatctttgtgcaactatatt
ggctaacttgcaaatttctctgtagtatgcctggttggttacgttgagaa
agcagctactctctaggggataatgcctcatctccaccaatcaggatgca
gttgatgattcattaggtgtgctggctagattatttaacttaattcaata
taaattattaaaatcttccagccttcctggtgttcaatatgaatgaaaca
attattcctggacaaaatcatccaaataacaccacaccgttttaccaagc
cccaagatagccattaaatcccagctagccactgctttacataaagtttg
catgctgagtttttgagggaataatattcttgaaattgtttggattcagt
aagattatgctattctatatttaatgagagaacatcccaattacatagca
acatgagaaatcataaaatatttctaggtagcaactttgccctggtttcg
ttgtctattcttgtccatgggggaaatggaagaactctgggagtttctgg
gactttttttcttttaatgccaagattgctatggggaaccattcttatag
gttaattctgtttctcgctctcatgtctaattggccagtagctggtgaac
aatggatgtaccactggtgtgttagctttctgtcagtgggttaaaatacc
tgaaacaatcaacttaaaatgagggtttcttctgctttatttttttttta
attatttttaattatgtgtatgtgtatgtatgtgagtgaagtgcccacag
agggccagaagaagtcatcaaatctcccagagctggagttacaaggtggt
tttgagcagctttgaatgtgggtgctgggtcttcggcaagggcagcaagt
gtttcttaactgctgagccatccctccagccctgagaaagggaggttatt
tttagttgtcagtttcagtccaatgggcatttggggcattttggcctgtg
tgtctgacaattcatcatggtgggggagaacatagccagaggaaacctgg
accactttcatggcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108237406_108237531
seq2: B6Ng01-241P16.b_52_177 (reverse)

seq1  TTCCCCCTTTCTCCCTTTCTCCCTCCTTTCTCCTCCATCCTAATTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTTTCTCCCTTTCTCCCTCCTTTCTCCTCCATCCTAATTTGGGG  50

seq1  ACAGGGCACAAGTCTTTTCTTTTGGAACTGCTGTGTCCTGATTTGTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCACAAGTCTTTTCTTTTGGAACTGCTGTGTCCTGATTTGTAGTT  100

seq1  CATACAACGAAGTGTTATATGTTGAA  126
      ||||||||||||||||||||||||||
seq2  CATACAACGAAGTGTTATATGTTGAA  126

seq1: chr13_108071193_108072241
seq2: B6Ng01-241P16.g_69_1135

seq1  GAATTCCATAACTGTCTCATATATTTGGTTCATCTTTGTGCAACTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACTGTCTCATATATTTGGTTCATCTTTGTGCAACTATATT  50

seq1  GGCTAACTTGCAAATTTCTCTGTAGTATGCCTGGTTGGTTACGTTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTTGCAAATTTCTCTGTAGTATGCCTGGTTGGTTACGTTGAGAA  100

seq1  AGCAGCTACTCTCTAGGGGATAATGCCTCATCTCCACCAATCAGGATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTACTCTCTAGGGGATAATGCCTCATCTCCACCAATCAGGATGCA  150

seq1  GTTGATGATTCATTAGGTGTGCTGGCTAGATTATTTAACTTAATTCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGATTCATTAGGTGTGCTGGCTAGATTATTTAACTTAATTCAATA  200

seq1  TAAATTATTAAAATCTTCCAGCCTTCCTGGTGTTCAATATGAATGAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTAAAATCTTCCAGCCTTCCTGGTGTTCAATATGAATGAAACA  250

seq1  ATTATTCCTGGACAAAATCATCCAAATAACACCACACCGTTTTACCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCTGGACAAAATCATCCAAATAACACCACACCGTTTTACCAAGC  300

seq1  CCCAAGATAGCCATTAAATCCCAGCTAGCCACTGCTTTACATAAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATAGCCATTAAATCCCAGCTAGCCACTGCTTTACATAAAGTTTG  350

seq1  CATGCTGAGTTTTTGAGGGAATAATATTCTTGAAATTGTTTGGATTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGAGTTTTTGAGGGAATAATATTCTTGAAATTGTTTGGATTCAGT  400

seq1  AAGATTATGCTATTCTATATTTAATGAGAGAACATCCCAATTACATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATGCTATTCTATATTTAATGAGAGAACATCCCAATTACATAGCA  450

seq1  ACATGAGAAATCATAAAATATTTCTAGGTAGCAACTTTGCCCTGGTTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAAATCATAAAATATTTCTAGGTAGCAACTTTGCCCTGGTTTCG  500

seq1  TTGTCTATTCTTGTCCATGGGGGAAATGGAAGAACTCTGGGAGTTTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATTCTTGTCCATGGGGGAAATGGAAGAACTCTGGGAGTTTCTGG  550

seq1  GACTTTTTTTCTTTTAATGCCAAGATTGCTATGGGGAACCATTCTTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTTCTTTTAATGCCAAGATTGCTATGGGGAACCATTCTTATAG  600

seq1  GTTAATTCTGTTTCTCGCTCTCATGTCTAATTGGCCAGTAGCTGGTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCTGTTTCTCGCTCTCATGTCTAATTGGCCAGTAGCTGGTGAAC  650

seq1  AATGGATGTACCACTGGTGTGTTAGCTTTCTGTCAGTGGGTTAAAATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGTACCACTGGTGTGTTAGCTTTCTGTCAGTGGGTTAAAATACC  700

seq1  TGAAACAATCAACTTAAAATGAGGGTTTCTTCTGCTTTA-TTTTTTTTTA  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAAACAATCAACTTAAAATGAGGGTTTCTTCTGCTTTATTTTTTTTTTA  750

seq1  ATTATTTTTAATTATGTGTATGTGTATGTATGTGAGTGAAGTGCCCACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAATTATGTGTATGTGTATGTATGTGAGTGAAGTGCCCACAG  800

seq1  A-GGCCAGAAGAAGTCATCAAATCTCCCAGAGCTGGAGTTAC-AGGTGGT  847
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGGCCAGAAGAAGTCATCAAATCTCCCAGAGCTGGAGTTACAAGGTGGT  850

seq1  TTTGAGCAGCTT--GATGTGGGTGCTGGGTCTTCGGCAAGGGCAGCAAGT  895
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  TTTGAGCAGCTTTGAATGTGGGTGCTGGGTCTTCGGCAAGGGCAGCAAGT  900

seq1  G-TTCTTAACTGCTGAGCCATCCCTCCAGCCCTGAGAAA-GGAGGT--AT  941
      | ||||||||||||||||||||||||||||||||||||| ||||||   |
seq2  GTTTCTTAACTGCTGAGCCATCCCTCCAGCCCTGAGAAAGGGAGGTTATT  950

seq1  TTTAGTTGTCAG-TTCAGTCC-ATGGGCATTT-GGGCATTTGGGCCTGTG  988
      |||||||||||| |||||||| |||||||||| |||||||| ||||||||
seq2  TTTAGTTGTCAGTTTCAGTCCAATGGGCATTTGGGGCATTTTGGCCTGTG  1000

seq1  TCT-GGGCAAATCATCATGGT-GGGGAGAACATAG-CAGAGGAAAC--TG  1033
      | |  | ||| |||||||||| ||||||||||||| ||||||||||   |
seq2  TGTCTGACAATTCATCATGGTGGGGGAGAACATAGCCAGAGGAAACCTGG  1050

seq1  ACAAC-TTCATGGCATT  1049
      || || |||||||||||
seq2  ACCACTTTCATGGCATT  1067