BAC Information

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BAC

Clone NameB6Ng01-242G01
Chromosome13 (Build37)
Map Location 4,809,922 - 4,978,825
singlet/doubletdoublet
Overlap geneEG432723
Upstream geneCalm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242G01.bB6Ng01-242G01.g
ACCGA052038GA052039
length1,191981
definitionB6Ng01-242G01.b B6Ng01-242G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,977,633 - 4,978,825)(4,809,922 - 4,810,576)
sequence
gaattctcctgtttctagaaaaacatgctaaggcaactattttcagacag
ggcctcaagttgatgatttcatttcaaatttgttgaaacaaaaaacagat
ttgctttctttctacatccaagttttccttacaaacacttatagtcactt
ctatataactgggtgcctaaggatttagggcaaacaacaatctgattaat
gcaataattatttaatatttgttagtttatttaagtggcttctttaaatt
ttatttttgctgggtgttggtcctggtgatagtgccaggagctttgtgcc
ctctgagcattgtgctctacccctgccaatctcttgttaacttttgatat
ttttaaaaataaaaactttatgcatgtgttgaaatttccatgtatgcatt
caaatttatcactatacagttttactattttaacttctctgggtttctat
cctctatctcttattctgtttcccacttatatcacttatttgtacttata
tcgcattaaatttatttctcctgtcagcaaaatcttgttggcatctgcaa
tggtgtctgggtttggaggttgtctatgggatggatccccaggtggggca
gtctctggatggtcattccttcagtctcagctctgaactttgtctttgta
actccttcttagctgccttctgagaggctctgccagtgcctggcaaatac
agaaatggatgctcacagtcatctattggacagagcacagggtccccaat
gaaggagctagagaaagtacccaaggagctgaaggggtttgcagccctac
aggaggaacaacaatatgaactaaccagtacctcagagctccctgggact
aaaccaccaatcaaagaaaatacgtggtgagacttgtgcctctagctgca
tatgtagcagaggatggcttagtcggtcatcagtgggagagaggcccttg
gtcttgtgaaggttctatgccccaatatagggaatgccagggcaaagaag
caaggagtgggtgggtttggggcgcagggcaaggtgggggcataggggat
tttcaggaaagaaactaggaaaggaataacatttggattttactaaggat
tatcttataaatattaaagtatttattacatttctcttttcccagggagt
ctgaataagaatatgttgggagttgcataatcttctccccc
gaattcctcctgtgacatacagtggattcaattgtctatctcaattagca
tgttataatcctaagcttacattaatatgaataatcttcatggggttgta
tatattaagatatggaaatgtttactatctcataaacattattttaaact
tataacaatttatttgtttatttacatcccaaatgcagtcatctcctcct
ctaccccacactgatcacccttcacagagttcctcctcccaacccctaca
catctcttctgagagggtgggatcccctttatatcccccaaccctgcaca
tcaagtctgcaggattaagtttctctcatgctgtaaccaaacaaggcagc
catggagactgagctgcatttgtgccagggggcttggtccagcctgaata
tactcatgggtaggtagctcggtctctgagagctcctggggatccaggcc
aggatactctgttggtcttcctgtggggttcccatcccaatcaggttctt
caatccttctcccaactcttctataagggtccctgatctctgtccaatgt
ttggctgtgggtatctgcatctgtttcagtcaattgctgggtagagctca
gagaacagtcatgctaagctcctgtgtgcaagcaaagtgcctagataaaa
aattaactcaaagaaatcagtagtcctttatataaatgataaatgggcta
agaaaataaattcctgaaacaacactcttcactatagccacaaatataaa
atatctttggtgtaattctaaccaagcaagtgaaagacctatatgacaag
aacttcaagtcactaaagaaagaaattaaagaagatatcagaagatgcaa
gatctcccatgcctgtggatcagtaggattaaaatgaaaacgcccacctt
taccaaaagcaatctacagggtttcaacacaatttcccatcaaaatttcc
aacacaatttttaatagaccttggaaaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4977633_4978825
seq2: B6Ng01-242G01.b_38_1228 (reverse)

seq1  GGGGGAGAAGATTAATGACAACTTCCAA-ACATACTTCATCAGGACTCCC  49
      ||||||||||||| ||| ||||| |||| | || |||  ||| |||||||
seq2  GGGGGAGAAGATT-ATG-CAACTCCCAACATATTCTTATTCA-GACTCCC  47

seq1  TGGGAAAAGAGAAATGTATATATATATTTTATAATTTATTAGATAATTCT  99
      |||||||||||||||||| ||| ||| ||||  |||||| ||||||| ||
seq2  TGGGAAAAGAGAAATGTA-ATAAATACTTTAATATTTATAAGATAATCCT  96

seq1  TTATTTATATTTCAAATGTTATTCCCTTCCTAGTTTCTTCTCTGAAAATC  149
      |    || | | ||||||||||||| |||||||||||||  |||||||||
seq2  T--AGTAAAATCCAAATGTTATTCCTTTCCTAGTTTCTTTCCTGAAAATC  144

seq1  CCCTATG-CCCCACCTTGCCCTGCGCCCC-AACCCACCCACTCC-TGCTT  196
      ||||||| ||||||||||||||||||||| |||||||||||||| |||||
seq2  CCCTATGCCCCCACCTTGCCCTGCGCCCCAAACCCACCCACTCCTTGCTT  194

seq1  CTTTGCCCTGGCATTCCCCTATATTGGGGCATAGAACCTTCACAAGACCA  246
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCTGGCATT-CCCTATATTGGGGCATAGAACCTTCACAAGACCA  243

seq1  AGGGCCTCTCCTCCCACTGATGACCGACTAAGCCATCCTCTGCTACATAT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTCT-CTCCCACTGATGACCGACTAAGCCATCCTCTGCTACATAT  292

seq1  GCAGCTAGAGGCACAAGTCTCACCACGTATTTTCTTTGATTGGTGGTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGAGGCACAAGTCTCACCACGTATTTTCTTTGATTGGTGGTTTA  342

seq1  GTCCCAGGGAGCTCTGAGGTACTGGTTAGTTCATATTGTTGTTCCTCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGGAGCTCTGAGGTACTGGTTAGTTCATATTGTTGTTCCTCCTG  392

seq1  TAGGGCTGCAAACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGCAAACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCA  442

seq1  TTGGGGACCCTGTGCTCTGTCCAATAGATGACTGTGAGCATCCATTTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACCCTGTGCTCTGTCCAATAGATGACTGTGAGCATCCATTTCTG  492

seq1  TATTTGCCAGGCACTGGCAGAGCCTCTCAGAAGGCAGCTAAGAAGGAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCAGGCACTGGCAGAGCCTCTCAGAAGGCAGCTAAGAAGGAGTT  542

seq1  ACAAAGACAAAGTTCAGAGCTGAGACTGAAGGAATGACCATCCAGAGACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAAAGTTCAGAGCTGAGACTGAAGGAATGACCATCCAGAGACT  592

seq1  GCCCCACCTGGGGATCCATCCCATAGACAACCTCCAAACCCAGACACCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCTGGGGATCCATCCCATAGACAACCTCCAAACCCAGACACCAT  642

seq1  TGCAGATGCCAACAAGATTTTGCTGACAGGAGAAATAAATTTAATGCGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGCCAACAAGATTTTGCTGACAGGAGAAATAAATTTAATGCGAT  692

seq1  ATAAGTACAAATAAGTGATATAAGTGGGAAACAGAATAAGAGATAGAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACAAATAAGTGATATAAGTGGGAAACAGAATAAGAGATAGAGGA  742

seq1  TAGAAACCCAGAGAAGTTAAAATAGTAAAACTGTATAGTGATAAATTTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCCAGAGAAGTTAAAATAGTAAAACTGTATAGTGATAAATTTGA  792

seq1  ATGCATACATGGAAATTTCAACACATGCATAAAGTTTTTATTTTTAAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACATGGAAATTTCAACACATGCATAAAGTTTTTATTTTTAAAAA  842

seq1  TATCAAAAGTTAACAAGAGATTGGCAGGGGTAGAGCACAATGCTCAGAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAGTTAACAAGAGATTGGCAGGGGTAGAGCACAATGCTCAGAGG  892

seq1  GCACAAAGCTCCTGGCACTATCACCAGGACCAACACCCAGCAAAAATAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGCTCCTGGCACTATCACCAGGACCAACACCCAGCAAAAATAAA  942

seq1  ATTTAAAGAAGCCACTTAAATAAACTAACAAATATTAAATAATTATTGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGAAGCCACTTAAATAAACTAACAAATATTAAATAATTATTGCA  992

seq1  TTAATCAGATTGTTGTTTGCCCTAAATCCTTAGGCACCCAGTTATATAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGATTGTTGTTTGCCCTAAATCCTTAGGCACCCAGTTATATAGA  1042

seq1  AGTGACTATAAGTGTTTGTAAGGAAAACTTGGATGTAGAAAGAAAGCAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTATAAGTGTTTGTAAGGAAAACTTGGATGTAGAAAGAAAGCAAA  1092

seq1  TCTGTTTTTTGTTTCAACAAATTTGAAATGAAATCATCAACTTGAGGCCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTTGTTTCAACAAATTTGAAATGAAATCATCAACTTGAGGCCC  1142

seq1  TGTCTG-AACTAGTTGCCTTAGCATG-TTTTCTAGAAACAGGAGAATTC  1193
      |||||| || |||||||||||||||| ||||||||||||||||||||||
seq2  TGTCTGAAAATAGTTGCCTTAGCATGTTTTTCTAGAAACAGGAGAATTC  1191

seq1: chr13_4809922_4810576
seq2: B6Ng01-242G01.g_68_722

seq1  GAATTCCTCCTGTGACATACAGTGGATTCAATTGTCTATCTCAATTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGTGACATACAGTGGATTCAATTGTCTATCTCAATTAGCA  50

seq1  TGTTATAATCCTAAGCTTACATTAATATGAATAATCTTCATGGGGTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAATCCTAAGCTTACATTAATATGAATAATCTTCATGGGGTTGTA  100

seq1  TATATTAAGATATGGAAATGTTTACTATCTCATAAACATTATTTTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAGATATGGAAATGTTTACTATCTCATAAACATTATTTTAAACT  150

seq1  TATAACAATTTATTTGTTTATTTACATCCCAAATGCAGTCATCTCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAATTTATTTGTTTATTTACATCCCAAATGCAGTCATCTCCTCCT  200

seq1  CTACCCCACACTGATCACCCTTCACAGAGTTCCTCCTCCCAACCCCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCACACTGATCACCCTTCACAGAGTTCCTCCTCCCAACCCCTACA  250

seq1  CATCTCTTCTGAGAGGGTGGGATCCCCTTTATATCCCCCAACCCTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCTGAGAGGGTGGGATCCCCTTTATATCCCCCAACCCTGCACA  300

seq1  TCAAGTCTGCAGGATTAAGTTTCTCTCATGCTGTAACCAAACAAGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGCAGGATTAAGTTTCTCTCATGCTGTAACCAAACAAGGCAGC  350

seq1  CATGGAGACTGAGCTGCATTTGTGCCAGGGGGCTTGGTCCAGCCTGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGACTGAGCTGCATTTGTGCCAGGGGGCTTGGTCCAGCCTGAATA  400

seq1  TACTCATGGGTAGGTAGCTCGGTCTCTGAGAGCTCCTGGGGATCCAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGGGTAGGTAGCTCGGTCTCTGAGAGCTCCTGGGGATCCAGGCC  450

seq1  AGGATACTCTGTTGGTCTTCCTGTGGGGTTCCCATCCCAATCAGGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTCTGTTGGTCTTCCTGTGGGGTTCCCATCCCAATCAGGTTCTT  500

seq1  CAATCCTTCTCCCAACTCTTCTATAAGGGTCCCTGATCTCTGTCCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTTCTCCCAACTCTTCTATAAGGGTCCCTGATCTCTGTCCAATGT  550

seq1  TTGGCTGTGGGTATCTGCATCTGTTTCAGTCAATTGCTGGGTAGAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTGGGTATCTGCATCTGTTTCAGTCAATTGCTGGGTAGAGCTCA  600

seq1  GAGAACAGTCATGCTAAGCTCCTGTGTGCAAGCAAAGTGCCTAGATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGTCATGCTAAGCTCCTGTGTGCAAGCAAAGTGCCTAGATAAAA  650

seq1  AATTA  655
      |||||
seq2  AATTA  655