BAC Information

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BAC

Clone NameB6Ng01-242H15
Chromosome13 (Build37)
Map Location 58,362,188 - 58,363,326
singlet/doubletsinglet
Overlap geneGkap1
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252
Downstream geneKif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H15.bB6Ng01-242H15.g
ACCGA052108GA052109
length1,1341,178
definitionB6Ng01-242H15.b B6Ng01-242H15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacagcaagggctatacagagaaaccctgtcttgaaaaacc
aaaccaaacaaaaaaatcaatgtctatatctaaactaagtacaaaatatt
tgttcataagttaaaatatgatgatggtctttaaaaaagtaacaaatcta
agtttattctgaacaaagctggttaatttgctactgtaatcctattttta
acatttaattgtgggaagaaacgtggtgattatttcttatgtagcataca
tacatttggctgaagtttcaatgagtcagagagcatgtcagattaggaag
tcttgcaatatactatgatctttcagtaactcacagaattaaaattgtta
aggcagatcattctgataaaacaataaaaaataaagtgtgtgtgtgtttt
cttttcttgtttttttttttttttttttttttttttttttaaaaaagaag
gtcttactatatatccttagctgtcctggaactcagtacatagactacgt
aggtcaaaaattcatagatccactaggcctagaaatgaaatttgaagtag
aaaaaataaaaaaccaaccaaccaaccaaacaccagtggctttccctgga
atctgtgtctaactgtaatagtttaaagtgtggctaccttacctgcctgc
ctgcttgcactgtgtgctgacaattggcctaaatcataataagcaagcaa
agataaagtatatgatagcatcaagcaaaactccaacctatcccttaagt
ttgcttttttcttattaacataaactagtatacaagtaagaaaaaatgag
tgaaacttaaaatttcaaaccaaaaaagaaccttaattatgatatactaa
gtattctctgaaactaaattttaatgttgctatttaaagggacagaaata
gggctggagagagagctcaaaggctgagagcactgactgttctctgaact
atgtgatctgtcttcttttccgagccacctgatcactggtgacagcaaat
atgaaagaaaggtgctggaagctgtgtttcaagtcacaacactgcttttg
tgtaaatctgatcatttctactcagtaccttagctatggagagaattctc
cttgatgaacgaacaatggtggactcctgtactg
gaattcacatgaaactgtgaatgaaattcacaagccaattctacaggtgt
ttgagtcagaaaggcagacgcagctctagcagctttatcaaccaaatcat
tgccctctgctaaagggtcaggcaaacctgtgtgagcttgaatgtgttgg
acaaaaactggagaacttctatttaaaattaaggattgcaatttatttaa
caaatcccctatagtggatcgaaaattcaccttccccaccacttccagca
ctgctaacgaattaaccacatactgactatctgaaattaaattaaaagat
gcagaatacaattcaaaaacttttataacaatgtgcaactcaataacttg
gggagaagcagggggaaactgtaaagttactggcataaatccatggacca
aatatgctccacagcctgtcttagacccatctgtaaaaattaaaggggca
tcaggcaatggcactcaagaagtaattcatgaaaaaacaactggatgagc
tttaatcagctgcaaaatgggatccttagggaaatgattatccatctttc
ccataaagctacatctcaaaattgcccaatcatcaacagtagctgataat
atttctatttgcttcatattatatggaacaatcaattcctgagggggatt
gccaaaatattgaatacattgttgtaggccaatcaaggccaattgtgcta
ctgaggcagggtaataagacaagatttttgcgggtgaagtcttggaatgt
atccatagcaaagcggcaccctgccagaggactccagtaggctgggtctc
tgagggcaggatacacaaaataataggactgaacagacctctttaatgct
gctgtttgaatacccttttcgaccaaacttaacgctacgcgggcagaatc
agtaagctgccggggagaatttaattctatatctcccagtaaaatatcat
ataatggttgtaattgttgttggtaggcccaaatagggacgtacccactg
taatatcccccaatagcttttggaaaatcattcaatgtctcaaattatcc
atcgaatctgaattttctggggagatactgactatcaaaatttgtctaaa
taattcaacaacttttcttctgaccttccaggctaaacaattgctttctt
ttaaatttttgggaattccacttaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58362188_58363326
seq2: B6Ng01-242H15.b_46_1179

seq1  GAATTCCAGGACAGCAAGGGCTATACAGAGAAACCCTGTCTTGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCAAGGGCTATACAGAGAAACCCTGTCTTGAAAAACC  50

seq1  AAACCAAACAAAAAAATCAATGTCTATATCTAAACTAAGTACAAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACAAAAAAATCAATGTCTATATCTAAACTAAGTACAAAATATT  100

seq1  TGTTCATAAGTTAAAATATGATGATGGTCTTTAAAAAAGTAACAAATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAAGTTAAAATATGATGATGGTCTTTAAAAAAGTAACAAATCTA  150

seq1  AGTTTATTCTGAACAAAGCTGGTTAATTTGCTACTGTAATCCTATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTCTGAACAAAGCTGGTTAATTTGCTACTGTAATCCTATTTTTA  200

seq1  ACATTTAATTGTGGGAAGAAACGTGGTGATTATTTCTTATGTAGCATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATTGTGGGAAGAAACGTGGTGATTATTTCTTATGTAGCATACA  250

seq1  TACATTTGGCTGAAGTTTCAATGAGTCAGAGAGCATGTCAGATTAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGGCTGAAGTTTCAATGAGTCAGAGAGCATGTCAGATTAGGAAG  300

seq1  TCTTGCAATATACTATGATCTTTCAGTAACTCACAGAATTAAAATTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAATATACTATGATCTTTCAGTAACTCACAGAATTAAAATTGTTA  350

seq1  AGGCAGATCATTCTGATAAAACAATAAAAAATAAAGTGTGTGTGTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATCATTCTGATAAAACAATAAAAAATAAAGTGTGTGTGTGTTTT  400

seq1  CTTTTCTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAGAGAAG  450
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  CTTTTCTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAGAAG  450

seq1  GTCTTACTATATATCCTTAGCTGTCCTGGAACTCAGTACATAGACTACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACTATATATCCTTAGCTGTCCTGGAACTCAGTACATAGACTACGT  500

seq1  AGGTCAAAAATTCATAGATCCACTAGGCCTAGAAATGAAATTTGAAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAAATTCATAGATCCACTAGGCCTAGAAATGAAATTTGAAGTAG  550

seq1  AAAAAATAAAAAACCAACCAACCAACCAAACACCAGTGGCTTTCCCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAAACCAACCAACCAACCAAACACCAGTGGCTTTCCCTGGA  600

seq1  ATCTGTGTCTAACTGTAATAGTTTAAAGTGTGGCTACCTTACCTGCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTCTAACTGTAATAGTTTAAAGTGTGGCTACCTTACCTGCCTGC  650

seq1  CTGCTTGCACTGTGTGCTGACAATTGGCCTAAATCATAATAAGCAAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCACTGTGTGCTGACAATTGGCCTAAATCATAATAAGCAAGCAA  700

seq1  AGATAAAGTATATGATAGCATCAAGCAAAACTCCAACCTATCCCTTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGTATATGATAGCATCAAGCAAAACTCCAACCTATCCCTTAAGT  750

seq1  TTGC-TTTTTCTTATTAACATAAACTAGTATACAAGTAAGAAAAAATGAG  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTTCTTATTAACATAAACTAGTATACAAGTAAGAAAAAATGAG  800

seq1  TGAAACTTAAAATTTCAAACCAAAAAAGAACCTTAATTATGATATACTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTAAAATTTCAAACCAAAAAAGAACCTTAATTATGATATACTAA  850

seq1  GTATTCTCTGAAACTAAATTTT-ATGTTGCTATTTAAA-GGACAGAAATA  897
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GTATTCTCTGAAACTAAATTTTAATGTTGCTATTTAAAGGGACAGAAATA  900

seq1  GGGCTGGAGAGAGAGCTCAGAGGCTGAGAGCACTGACTGTTCTCCTGAAC  947
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  GGGCTGGAGAGAGAGCTCAAAGGCTGAGAGCACTGACTGTTCT-CTGAAC  949

seq1  TATGTGATCTGTCTTCTTTTCCGAGCCACCTGATCACT-GTGACAGCAAA  996
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATGTGATCTGTCTTCTTTTCCGAGCCACCTGATCACTGGTGACAGCAAA  999

seq1  TATGGAGAAGGAAAGGTGCTGGAGGCTGTGTTCAAGGTCAC-ACACTGCT  1045
      |||   ||| ||||||||||||| ||||||||  | ||||| ||||||||
seq2  TAT---GAAAGAAAGGTGCTGGAAGCTGTGTTTCAAGTCACAACACTGCT  1046

seq1  TTTGTGTAAATCTGAGTCATTTTCCTACATCAGTTTCCCTTTAGCTATTG  1095
      ||||||||||||||| ||||||  |||| |||||    | |||||||| |
seq2  TTTGTGTAAATCTGA-TCATTT--CTAC-TCAGT---ACCTTAGCTATGG  1089

seq1  AGAGAAATTCTCTCTGATG-ACG-ACAATGGT-GACTCCTGTTACTG  1139
      |||| |||||||  ||||| ||| |||||||| |||||||| |||||
seq2  AGAG-AATTCTCCTTGATGAACGAACAATGGTGGACTCCTG-TACTG  1134