BAC Information

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BAC

Clone NameB6Ng01-242I16
Chromosome13 (Build37)
Map Location 5,184,821 - 5,316,316
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242I16.bB6Ng01-242I16.g
ACCGA052158GA052159
length1,144654
definitionB6Ng01-242I16.b B6Ng01-242I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,184,821 - 5,185,907)(5,315,665 - 5,316,316)
sequence
gaattcaccaacttgcttgtaatatgaaatgtagcctgctttacctggct
gtagtgaagatccctgtctcagtgggattccctaacttttacaaggtaaa
cccacctattagctaggccattgtgtatgggtgagactggctactgcctc
aagtaaacactctgcagactagccctgagctattctagctctgttctttg
taatgcttaattaggttcactgtctctactagaagtaaatttgaatgtta
ctgaataggtaacctcactgaattcctactgaattcccagttgtttcaag
tgttttctgtgacattggaacacactggcaaaggcttagctatgtcagaa
ttcaatcttaaaaggcacttataatgaggtaatactaaaagagagcacat
ggatccgtacactagactaatgcagggatagggtatgagtatatgggtta
tgagaacaccaaagttccaggaggtgtatttccgtgaaactctttgcctc
gtgagtgctcccaggcctctcagcctgccaagcaaacttcactgtagtgt
gtgtagcacatgctgacaaactctttgcttagaaaaacagatgttttctg
tgcatatttatacagaaagataagtagacaatttgtacctgagaagcatc
atttatattttctcttcctgttcatttacagataaatgtacacaaggttg
cacacataggttgctggtgtccttttgtaaattagaagtaggcccatgat
accaggcaactatgatttatcacttgctcaacacactatcatattagtac
taattgtacactttatccaatctacctacctctcaaaaaaaaatcaacat
tcaacatggtctaattttccatttcacagagaattaaaacataaaaatat
gtcctctagtgaatgaacttgttctcagttgtctaacttcctccttcatc
attgtcttccacactttcctgtcttcacacaaaggatgtctgtgtacatt
acaggtctgtgtcacagctcttcccatgactttttttttttctagcatca
ctttatacttcactcattctcttggacattgatgaacattccacaggatc
agtcctgttcagcatggatggactcactttcctgcactagaagt

gaattctttgtatttttgaaggatttaatttttttgtatattaatgtgca
taagtatgaacttatgtttgcataacttatgtttgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtttgagaaattcagaaaaagggtgccaga
ctcctccgaaatagaactgcaagtgtttgtggaatacccagctattatgt
ctttgtagtactaggagctacatgctagtcatcacgactgtatagtaaca
actgagccatttctccatccctggtttttaatttttttgggccaaggtgt
tgttgctatgtcattttggctggccttggaattgtatgtcttattcctaa
tatttctgattgcaaagattacagaaaataccaacattcataccttagta
gaaattttaaatttgaggaaacttgcttgaagtaggcaggttgttacatg
catttaaataggggtgaaagaaaggataacaataggctctcatcctaagg
attcctcttacatagagaaactcaggttgccacctgatgataatactgca
atttaaccagctaacactaggcaccataaaaatgacagactctgcaattc
tattcccaacctcaccagaggtctcaaaattaattattttttcttgccct
gtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5184821_5185907
seq2: B6Ng01-242I16.b_100_1185

seq1  GATCCCTGTCTCAGTGGGATTCCCTAACTTTTACAAGGTAAACCCACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGTCTCAGTGGGATTCCCTAACTTTTACAAGGTAAACCCACCTA  50

seq1  TTAGCTAGGCCATTGTGTATGGGTGAGACTGGCTACTGCCTCAAGTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAGGCCATTGTGTATGGGTGAGACTGGCTACTGCCTCAAGTAAAC  100

seq1  ACTCTGCAGACTAGCCCTGAGCTATTCTAGCTCTGTTCTTTGTAATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGACTAGCCCTGAGCTATTCTAGCTCTGTTCTTTGTAATGCTT  150

seq1  AATTAGGTTCACTGTCTCTACTAGAAGTAAATTTGAATGTTACTGAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTTCACTGTCTCTACTAGAAGTAAATTTGAATGTTACTGAATAG  200

seq1  GTAACCTCACTGAATTCCTACTGAATTCCCAGTTGTTTCAAGTGTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCACTGAATTCCTACTGAATTCCCAGTTGTTTCAAGTGTTTTCT  250

seq1  GTGACATTGGAACACACTGGCAAAGGCTTAGCTATGTCAGAATTCAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTGGAACACACTGGCAAAGGCTTAGCTATGTCAGAATTCAATCT  300

seq1  TAAAAGGCACTTATAATGAGGTAATACTAAAAGAGAGCACATGGATCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCACTTATAATGAGGTAATACTAAAAGAGAGCACATGGATCCGT  350

seq1  ACACTAGACTAATGCAGGGATAGGGTATGAGTATATGGGTTATGAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGACTAATGCAGGGATAGGGTATGAGTATATGGGTTATGAGAACA  400

seq1  CCAAAGTTCCAGGAGGTGTATTTCCGTGAAACTCTTTGCCTCGTGAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTCCAGGAGGTGTATTTCCGTGAAACTCTTTGCCTCGTGAGTGC  450

seq1  TCCCAGGCCTCTCAGCCTGCCAAGCAAACTTCACTGTAGTGTGTGTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCCTCTCAGCCTGCCAAGCAAACTTCACTGTAGTGTGTGTAGCA  500

seq1  CATGCTGACAAACTCTTTGCTTAGAAAAACAGATGTTTTCTGTGCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGACAAACTCTTTGCTTAGAAAAACAGATGTTTTCTGTGCATATT  550

seq1  TATACAGAAAGATAAGTAGACAATTTGTACCTGAGAAGCATCATTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAAAGATAAGTAGACAATTTGTACCTGAGAAGCATCATTTATAT  600

seq1  TTTCTCTTCCTGTTCATTTACAGATAAATGTACACAAGGTTGCACACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCCTGTTCATTTACAGATAAATGTACACAAGGTTGCACACATA  650

seq1  GGTTGCTGGTGTCCTTTTGTAAATTAGAAGTAGGCCCATGATACCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGTGTCCTTTTGTAAATTAGAAGTAGGCCCATGATACCAGGCA  700

seq1  ACTATGATTTATCACTTGCTCAACACACTATCATATTAGTACTAATTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATTTATCACTTGCTCAACACACTATCATATTAGTACTAATTGTA  750

seq1  CACTTTATCCAATCTACCTACCTCTC-AAAAAAAATCAACATTCAACAAT  799
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  CACTTTATCCAATCTACCTACCTCTCAAAAAAAAATCAACATTCAAC-AT  799

seq1  GGTCTAATTTTCCATTTCACAGAGAATTAAAACAATAAAATATGTCCTCT  849
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  GGTCTAATTTTCCATTTCACAGAGAATTAAAACATAAAAATATGTCCTCT  849

seq1  AGTGAATGAACTTGTTCTCAGTTGTCTAAC-TCCTCCTTCATCATTGTCT  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTGAATGAACTTGTTCTCAGTTGTCTAACTTCCTCCTTCATCATTGTCT  899

seq1  TCCACAACTTCCTGTCTTCCACACAAAGGATGTCTGTGTACATTACAGGT  948
      ||||||  |||||||||| |||||||||||||||||||||||||||||||
seq2  TCCACACTTTCCTGTCTT-CACACAAAGGATGTCTGTGTACATTACAGGT  948

seq1  CTGTGTCACAGCTCTTCCCATGACCTTTTTTTTTTCTAGCATCACCTTTA  998
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CTGTGTCACAGCTCTTCCCATGACTTTTTTTTTTTCTAGCATCA-CTTTA  997

seq1  TTACTTTCACTCATTCTCTT-GACA-TGATGAACATCCACAAAGAATCAG  1046
       ||| ||||||||||||||| |||| |||||||||| | || || |||||
seq2  -TAC-TTCACTCATTCTCTTGGACATTGATGAACATTC-CACAGGATCAG  1044

seq1  TTCTTGTTCAGCAT-GAT-GACTCAC-TTCCTGCAACAAGAAGT  1087
       || |||||||||| ||| ||||||| ||||||| || ||||||
seq2  -TCCTGTTCAGCATGGATGGACTCACTTTCCTGC-ACTAGAAGT  1086


seq1: chr13_5315665_5316316
seq2: B6Ng01-242I16.g_68_721 (reverse)

seq1  ACACA-GGCAAGAAAAAATAATTAATTTTGAGACCTCTGGTGAGGTTGGG  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCAAGAAAAAATAATTAATTTTGAGACCTCTGGTGAGGTTGGG  50

seq1  AATAGAATTGCAGAGTCTGTCA-TTTTATGGTGCCTAGTGTTAGCTGGTT  98
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATAGAATTGCAGAGTCTGTCATTTTTATGGTGCCTAGTGTTAGCTGGTT  100

seq1  AAATTGCAGTATTATCATCAGGTGGCAACCTGAGTTTCTCTATGTAAGAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCAGTATTATCATCAGGTGGCAACCTGAGTTTCTCTATGTAAGAG  150

seq1  GAATCCTTAGGATGAGAGCCTATTGTTATCCTTTCTTTCACCCCTATTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTAGGATGAGAGCCTATTGTTATCCTTTCTTTCACCCCTATTTA  200

seq1  AATGCATGTAACAACCTGCCTACTTCAAGCAAGTTTCCTCAAATTTAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGTAACAACCTGCCTACTTCAAGCAAGTTTCCTCAAATTTAAAA  250

seq1  TTTCTACTAAGGTATGAATGTTGGTATTTTCTGTAATCTTTGCAATCAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTAAGGTATGAATGTTGGTATTTTCTGTAATCTTTGCAATCAGA  300

seq1  AATATTAGGAATAAGACATACAATTCCAAGGCCAGCCAAAATGACATAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGGAATAAGACATACAATTCCAAGGCCAGCCAAAATGACATAGC  350

seq1  AACAACACCTTGGCCCAAAAAAATTAAAAACCAGGGATGGAGAAATGGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACCTTGGCCCAAAAAAATTAAAAACCAGGGATGGAGAAATGGCT  400

seq1  CAGTTGTTACTATACAGTCGTGATGACTAGCATGTAGCTCCTAGTACTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTACTATACAGTCGTGATGACTAGCATGTAGCTCCTAGTACTAC  450

seq1  AAAGACATAATAGCTGGGTATTCCACAAACACTTGCAGTTCTATTTCGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATAATAGCTGGGTATTCCACAAACACTTGCAGTTCTATTTCGGA  500

seq1  GGAGTCTGGCACCCTTTTTCTGAATTTCTCAAACACACACACACACACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGGCACCCTTTTTCTGAATTTCTCAAACACACACACACACACAC  550

seq1  ACACACACACACACACACACAAACATAAGTTATGCAAACATAAGTTCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAAACATAAGTTATGCAAACATAAGTTCATA  600

seq1  CTTATGCACATTAATATACAAAAAAATTAAATCCTTCAAAAATACAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCACATTAATATACAAAAAAATTAAATCCTTCAAAAATACAAAGA  650

seq1  ATTC  652
      ||||
seq2  ATTC  654


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