BAC Information

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BAC

Clone NameB6Ng01-243D09
Chromosome13 (Build37)
Map Location 116,461,786 - 116,462,890
singlet/doubletsinglet
Overlap genenone
Upstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
Downstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243D09.bB6Ng01-243D09.g
ACCGA052655GA052656
length1,1031,161
definitionB6Ng01-243D09.b B6Ng01-243D09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttctgattccgtcctggcacaggccaggactggtaggagatct
aaagttcatgagaggctttgtgtcttagtatattagaagctttctggagc
tgagtgagaacgtgcttcacagaaggtagaaatatcctttcccttggctt
cgtggctgtagagaatgaagacaaaaacaagaatcttacaacctcgaatg
acaggcccttgtagtgatatgtcgataacaggtctggccgcagagccttt
gcacatggcttatctgacacaccatataaaacaaagtcaaccaaagcagg
aagaaaaacatgtggattgagtcattgggtgattgttttggtcacactgg
tgtctaattgccctgttagtgggtgcaaatgtatatttcaaagtccatca
gggcaccgagtggaaggttactacaagtaatattagtttcgcaagtgagt
cacatctcaactagaaatggtctcacaagtaataaggaaacaaaacatac
acacacacacacacacacacacacacacacacacacacacactaaataaa
acaaaaacaacaacaacaaaaaccaaccaaaaacaacaacaacaacaaca
aaacaaccccacacaggtatagtatgtatcaggtcttcttatatgatttt
tttatatgactttagtattcacatgaatctacaaagcttaaatttgaccg
tggttattctgacagaaaagtgggattacggtaagatccactggcaccaa
tcctggaaatacaccccaggaggtgtaagtcagatgagagtcgaacaacc
atgtttactgtggcaccgttcacgatggctgaactgtggactcacacgaa
ggattcgtcaacggactcggagtttcattcacctataaagtataaaacat
gttattttcaagaaagtggatagaaccagagataataagaattgctaatt
aaataacccagagtgagaaagaccaacaccgcatcacacttttattcatg
gtgttttatgaaatatataaatatttatgatatatagagtatatatggtg
cgggtatgggagcaaaaaaaaaaaaaagaattggaacgatgcaatgggaa
agg

gaattctcagtttagttctatatcccatttgttgattgggttgttcggtt
ttttggtgattaacttcttgagttccttatatatcttggacagtagccct
gtatcagatgtgaggtcaaagacatggaaagagcaattctcaaattcatc
cgtaaaggcaaaaaaaaaaacagaatagtggaaacaattcttaataacaa
aagaacagctaggagaatcaccatccctgacctcaaattttactacagag
caacagtgattaaaaaactgcattatattggtacaaagacagacatgctg
atcaatggaatagaattgaagacccagaaatgaaaccacatacttactgt
cacttggtcttttacaaagacgtcaaaaatatacaatggaaaaaagaaag
cattttcaatcaatggtgctggtctaactggctgtctgtatgtagaagaa
tgaaaacagacccatatttgtcaccttctacaaagctcaaggacctcagc
ataaaaccagatacactgaatctaatagaagaggaagtgcaagaaagagc
cttgaactcattggcacaggtggaaatttcctaaacgggactccagtggc
tcatgctctaagatcaagaattgataaatgggatctcataaaactggaaa
gcttctgtaaggctaaggacatagtcgataatacaaataagcagcctact
gattgggaaaaaaatattcactgaattttctatcttattgtaggacatag
ctgccaatgattctctccaattcactaggccaaaagacaaacatcttcct
tccttgtggaggaaaatgattgactgcataacttaacatttcttctggta
ctaagaatgcaacttcaatgcaggtaatttaaatgttatcctcatttcag
taatggaaagtctacttaattctaaaaaatagatattttaattatttcca
actttgtagtattatgacttttccccctctcattgacatagatttatgtt
ttagctgttgtaaatgaacagtctagagagaggacacagagtcacagaaa
ctacactggacattagtggggcagcactcctttaaatacttgcatgtaag
atgagcaacattccagagcagccatacactgtgggtggaatggtgaaaac
cggcagcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116461786_116462890
seq2: B6Ng01-243D09.b_46_1148

seq1  GAATTCCTTCTGATTCCGTCCTGGCACAGGCCAGGACTGGTAGGAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGATTCCGTCCTGGCACAGGCCAGGACTGGTAGGAGATCT  50

seq1  AAAGTTCATGAGAGGCTTTGTGTCTTAGTATATTAGAAGCTTTCTGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCATGAGAGGCTTTGTGTCTTAGTATATTAGAAGCTTTCTGGAGC  100

seq1  TGAGTGAGAACGTGCTTCACAGAAGGTAGAAATATCCTTTCCCTTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGAACGTGCTTCACAGAAGGTAGAAATATCCTTTCCCTTGGCTT  150

seq1  CGTGGCTGTAGAGAATGAAGACAAAAACAAGAATCTTACAACCTCGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTGTAGAGAATGAAGACAAAAACAAGAATCTTACAACCTCGAATG  200

seq1  ACAGGCCCTTGTAGTGATATGTCGATAACAGGTCTGGCCGCAGAGCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCCTTGTAGTGATATGTCGATAACAGGTCTGGCCGCAGAGCCTTT  250

seq1  GCACATGGCTTATCTGACACACCATATAAAACAAAGTCAACCAAAGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGCTTATCTGACACACCATATAAAACAAAGTCAACCAAAGCAGG  300

seq1  AAGAAAAACATGTGGATTGAGTCATTGGGTGATTGTTTTGGTCACACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACATGTGGATTGAGTCATTGGGTGATTGTTTTGGTCACACTGG  350

seq1  TGTCTAATTGCCCTGTTAGTGGGTGCAAATGTATATTTCAAAGTCCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTGCCCTGTTAGTGGGTGCAAATGTATATTTCAAAGTCCATCA  400

seq1  GGGCACCGAGTGGAAGGTTACTACAAGTAATATTAGTTTCGCAAGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCGAGTGGAAGGTTACTACAAGTAATATTAGTTTCGCAAGTGAGT  450

seq1  CACATCTCAACTAGAAATGGTCTCACAAGTAATAAGGAAACAAAACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCAACTAGAAATGGTCTCACAAGTAATAAGGAAACAAAACATAC  500

seq1  ACACACACACACACACACACACACACACACACACACACACACTAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACTAAATAAA  550

seq1  ACAAAAACAACAACAACAAAAACCAACCAAAAACAACAACAACAACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAACAACAACAAAAACCAACCAAAAACAACAACAACAACAACA  600

seq1  AAACAACCCCACACAGGTATAGTATGTATCAGGTCTTCTTATATGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCCACACAGGTATAGTATGTATCAGGTCTTCTTATATGATTTT  650

seq1  TTTATATGACTTTAGTATTCACATGAATCTACAAAGCTTAAATTTGACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGACTTTAGTATTCACATGAATCTACAAAGCTTAAATTTGACCG  700

seq1  TGGTTATTCTGACAGAAAAGTGGGATTACGGTAAGATCCACTGGCACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTCTGACAGAAAAGTGGGATTACGGTAAGATCCACTGGCACCAA  750

seq1  TCCTGGAAATACACCCCAGGAGGTGTAAGTCAGATGAGAGTCGAACAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAAATACACCCCAGGAGGTGTAAGTCAGATGAGAGTCGAACAACC  800

seq1  ATGTTTACTGTGGCACCGTTCACGATGGCTGAACTGTGGACTCACACGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACTGTGGCACCGTTCACGATGGCTGAACTGTGGACTCACACGAA  850

seq1  GGATTCGTCAACGGACTCGGAGTTTCATTCACCTATAAAGTATAAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCGTCAACGGACTCGGAGTTTCATTCACCTATAAAGTATAAAACAT  900

seq1  GTTATTTTCAAGAAAGTGGATAGAACCAGAGATAATAAGAA-TGCTAAAT  949
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  GTTATTTTCAAGAAAGTGGATAGAACCAGAGATAATAAGAATTGCT-AAT  949

seq1  TAAATAACCCAGAGTGAGAAAGACCAACACCGCATCACAACTTTTATTCA  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAATAACCCAGAGTGAGAAAGACCAACACCGCATCAC-ACTTTTATTCA  998

seq1  TGGTG-TTTATGAAATATATAAATATTTATGAATATATAGAGTATATAT-  1047
      ||||| ||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TGGTGTTTTATGAAATATATAAATATTTATG-ATATATAGAGTATATATG  1047

seq1  GTGCGGGTATGGAAGCAAAAAAAAAAAAAAAGAAATTGGAAGGATGGAAT  1097
      |||||||||||| |||||||||||||||||   |||||||| |||| |||
seq2  GTGCGGGTATGGGAGCAAAAAAAAAAAAAA--GAATTGGAACGATGCAAT  1095

seq1  GGGAAAGG  1105
      ||||||||
seq2  GGGAAAGG  1103


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