BAC Information

Click to search

BAC

Clone NameB6Ng01-243H16
Chromosome13 (Build37)
Map Location 81,993,461 - 81,994,625
singlet/doubletsinglet
Overlap genenone
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243H16.g
ACCGA052853
length1,164
definitionB6Ng01-243H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacggatgtgaaagagcccactgagcatgcgcgatcccacag
tggcgccccttgctggagaacacgcgacagcgagatggaaacctctcagg
caaggtgtgagattaggttaggttagtaaatataccgaggaggactggtc
ggtgtgtgagtcgccacctgaggaagaagtaaaagatgaaagctggaagc
attacatctccagggtcctttaggacatttgccactgcccatcgctagtg
cccagccaccacttgcaggacaatccgaccctgtgattgtgtgttcttca
gaaaccgaaaatgtgtgtttagcgtagcaagcagactttcttgggttttt
taccagtctgtctttcttttccttctttgagagaagggaagaggagagaa
acatttctattttactagaaaccacacaaagaaaagaagaaaactttttg
agtgtctgaacctagttttcatttagctttattctatcttgatttcctaa
tcggtgaaaattatattaccagtcttcctccacagtagacttactcaacc
acagaagacaatgtacacaaaacattctgaaatgtacaacggtgtgcaaa
cgctaagtgaaaattaatgttttctactatttttagtattattattattc
tccctgtgcccatgaacgattgacctgaacaaacgtccaagaaaaatctt
tagcatttgtttatacagttgaatactgccgtttccatctgtggatatgt
tcatctttgtccagcctttggcaagatatcactccaccttatgaggccag
agggaaagaacaattctgaatgaaaaataagggtcaagcatccaattgac
attcatctcttctggttcagtcatctgcctatcaaaaacctccaactgtt
cttggtagaaattacaaaggaggataacagccagggaaaagaaaaacctg
agcaatcatacgtagcacatttttttttccttcttgtggagggaacattc
ctcagtctgtgttttcaagaaagtatttttagtgcagattttttttttgt
agtttccagtataataacttttgctgatgtactgcatcctataattatat
acatgttgtcgaaatcaatgtcctaaaatattatcagcactggctaaaat
atatttctttcaca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81993461_81994625
seq2: B6Ng01-243H16.g_67_1230 (reverse)

seq1  TGTGAA--GAATATA-TTTAGCAAGTGCTGATAATATTTTAAGAACATTT  47
      ||||||   |||||| |||||| ||||||||||||||||| || ||| ||
seq2  TGTGAAAGAAATATATTTTAGCCAGTGCTGATAATATTTT-AGGACA-TT  48

seq1  GATTCTGAC-ACATGGTATATAATTTATAGGGATGCAGGTTACATCAGCA  96
      ||||  ||| |||| |||||||| ||||| ||||||||  ||||||||||
seq2  GATTTCGACAACAT-GTATATAA-TTATA-GGATGCAG--TACATCAGCA  93

seq1  AAAGGTTATATACTGGGAAACCTAC-AAAAAAAAATCTGCAACTAAAATA  145
      |||| |  ||||||||  || |||| |||||||||||||||   ||||||
seq2  AAAGTTATTATACTGG--AAACTACAAAAAAAAAATCTGCACTAAAAATA  141

seq1  CTTTCTTG-AAACACAGACTGAGGAATGTTCCCT-CAC-AGAAGGAAAAA  192
      |||||||| ||||||||||||||||||||||||| ||| |||||||||||
seq2  CTTTCTTGAAAACACAGACTGAGGAATGTTCCCTCCACAAGAAGGAAAAA  191

seq1  AAAATGTGCTACGTATGATTGCTCAGGTTTTTCTTTT-CCTGGCTGTTTA  241
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  AAAATGTGCTACGTATGATTGCTCAGGTTTTTCTTTTCCCTGGCTG-TTA  240

seq1  TCCTCCTTTGTAATTTCTACCAAGAACAGTTGGAGGTTTTTGATAGGCAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTGTAATTTCTACCAAGAACAGTTGGAGGTTTTTGATAGGCAG  290

seq1  ATGACTGAACCAGAAGAGATGAATGTCAATTGGATGCTTGACCCTTATTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGAACCAGAAGAGATGAATGTCAATTGGATGCTTGACCCTTATTT  340

seq1  TTCATTCAGAATTGTTCTTTCCCTCTGGCCTCATAAGGTGGAGTGATATC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAGAATTGTTCTTTCCCTCTGGCCTCATAAGGTGGAGTGATATC  390

seq1  TTGCCAAAGGCTGGACAAAGATGAACATATCCACAGATGGAAACGGCAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAGGCTGGACAAAGATGAACATATCCACAGATGGAAACGGCAGT  440

seq1  ATTCAACTGTATAAACAAATGCTAAAGATTTTTCTTGGACGTTTGTTCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTGTATAAACAAATGCTAAAGATTTTTCTTGGACGTTTGTTCAG  490

seq1  GTCAATCGTTCATGGGCACAGGGAGAATAATAATAATACTAAAAATAGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCGTTCATGGGCACAGGGAGAATAATAATAATACTAAAAATAGTA  540

seq1  GAAAACATTAATTTTCACTTAGCGTTTGCACACCGTTGTACATTTCAGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTAATTTTCACTTAGCGTTTGCACACCGTTGTACATTTCAGAA  590

seq1  TGTTTTGTGTACATTGTCTTCTGTGGTTGAGTAAGTCTACTGTGGAGGAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGTACATTGTCTTCTGTGGTTGAGTAAGTCTACTGTGGAGGAA  640

seq1  GACTGGTAATATAATTTTCACCGATTAGGAAATCAAGATAGAATAAAGCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTAATATAATTTTCACCGATTAGGAAATCAAGATAGAATAAAGCT  690

seq1  AAATGAAAACTAGGTTCAGACACTCAAAAAGTTTTCTTCTTTTCTTTGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAACTAGGTTCAGACACTCAAAAAGTTTTCTTCTTTTCTTTGTG  740

seq1  TGGTTTCTAGTAAAATAGAAATGTTTCTCTCCTCTTCCCTTCTCTCAAAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTAGTAAAATAGAAATGTTTCTCTCCTCTTCCCTTCTCTCAAAG  790

seq1  AAGGAAAAGAAAGACAGACTGGTAAAAAACCCAAGAAAGTCTGCTTGCTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGAAAGACAGACTGGTAAAAAACCCAAGAAAGTCTGCTTGCTA  840

seq1  CGCTAAACACACATTTTCGGTTTCTGAAGAACACACAATCACAGGGTCGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAACACACATTTTCGGTTTCTGAAGAACACACAATCACAGGGTCGG  890

seq1  ATTGTCCTGCAAGTGGTGGCTGGGCACTAGCGATGGGCAGTGGCAAATGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTGCAAGTGGTGGCTGGGCACTAGCGATGGGCAGTGGCAAATGT  940

seq1  CCTAAAGGACCCTGGAGATGTAATGCTTCCAGCTTTCATCTTTTACTTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGACCCTGGAGATGTAATGCTTCCAGCTTTCATCTTTTACTTCT  990

seq1  TCCTCAGGTGGCGACTCACACACCGACCAGTCCTCCTCGGTATATTTACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGTGGCGACTCACACACCGACCAGTCCTCCTCGGTATATTTACT  1040

seq1  AACCTAACCTAATCTCACACCTTGCCTGAGAGGTTTCCATCTCGCTGTCG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAACCTAATCTCACACCTTGCCTGAGAGGTTTCCATCTCGCTGTCG  1090

seq1  CGTGTTCTCCAGCAAGGGGCGCCACTGTGGGATCGCGCATGCTCAGTGGG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCTCCAGCAAGGGGCGCCACTGTGGGATCGCGCATGCTCAGTGGG  1140

seq1  CTCTTTCACATCCGTTGAGAATTC  1165
      ||||||||||||||||||||||||
seq2  CTCTTTCACATCCGTTGAGAATTC  1164