BAC Information

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BAC

Clone NameB6Ng01-243P20
Chromosome13 (Build37)
Map Location 107,005,401 - 107,133,213
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf180, Htr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243P20.bB6Ng01-243P20.g
ACCGA053233GA053234
length1,171469
definitionB6Ng01-243P20.b B6Ng01-243P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,005,401 - 107,006,547)(107,132,739 - 107,133,213)
sequence
gaattcaaaaacaaattattgaaaagaataaataaatgcaacttgaatgg
tatacataaatatcatctttgagatacatgaaagggttatatgcttaaat
atagtagaaataagtacatatataataataataataataataataataat
aataataataataataataaacacaatacacctgacaatagtggctttct
ctgaggaagaaaggaggatgggtgttaacattattaagaggccatgaagt
gaaaaattaacaaagaagggtgtgcagtaggtttggaggagataaaaaag
gaaaaaatgcagtaatcacttcaaaaaataggcaaaatgatttttaaaga
cattaggcaggacatggagatttcatagtaatcattgccaatgttttagt
tatttctcattcaaactgttgtattttctcttactcttcgttaattaata
attaatcattttctcatatagtcagaaatttattttggctggagtgatga
tggtgcctgcctgtaatcacaggcggcagaggtgagagatcaccgcaagt
ccaaggccaataaattctacatagtaagttccaggttagccaaggctgta
tagtcttttctaatcctgtctcagagtctggctctgtctttattgattaa
ttttttttaatttgaaactatagaaccaaaatgtccttttcttgtagaaa
aagcaaaaacctgtgattaaatataataaaaatgtcatgtttttctcagc
tgaaccatattgaccatcacctttcccaagttgatctttgttaacttgct
ggtatttgattttacatagcacagacacaaacacacccacacatacacac
acatgcactcacacatgcacacacacacacacactttctctctctaggct
gagtgaaaaactgctaatcatacatataatttctttcattatataacttg
ctttatttttataaagtctgaactcattcaagttgtagttatgtgtttca
agaccaatggaaataagaagccttatgaacaacactagcaagaatattcc
tcattttgtctcttaatctacatttacatgacaaccattcaccgaaagtt
caaaccacatctccactctattgcaaactaaatagcatcctagcctttgt
tgagtgtttttgtggctgttt

cagaaggctcctgtagctttgacaggctgctattctgtgtaggaaacacc
gaacagactctatttcaatgtgaatgttgattccaatgggaaatctggtg
tggatgataaaacaacaccactcagaataagtcaccagcgaagtgaactc
acaaaaaccagtggagactctacccaagaaaattgctttctacctcatat
atttcagtgtttttatttagctctggattatttcttttatgaatcattac
ttttataatatgtatttaaatacgacaatatctaaaataaagtacataaa
tgtatataatagttaggaagctatggtttgaaaggatgttagaaatctcc
accaacaattctggtattgctatcctaagatctgggtgtatgttcagtat
attgttttgtgttgttttgttttgttttttgttttgttttgttttgtttt
gtgttgtgttgtgttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_107005401_107006547
seq2: B6Ng01-243P20.b_45_1215

seq1  GAATTCAAAAACAAATTATTGAAAAGAATAAATAAATGCAACTTGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAACAAATTATTGAAAAGAATAAATAAATGCAACTTGAATGG  50

seq1  TATACATAAATATCATCTTTGAGATACATGAAAGGGTTATATGCTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAAATATCATCTTTGAGATACATGAAAGGGTTATATGCTTAAAT  100

seq1  ATAGTAGAAATAAGTACATATATAATAATAATAATAATAATAATAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAAATAAGTACATATATAATAATAATAATAATAATAATAATAAT  150

seq1  AATAATAATAATAATAATAAACACAATACACCTGACAATAGTGGCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATAATAAACACAATACACCTGACAATAGTGGCTTTCT  200

seq1  CTGAGGAAGAAAGGAGGATGGGTGTTAACATTATTAAGAGGCCATGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAGAAAGGAGGATGGGTGTTAACATTATTAAGAGGCCATGAAGT  250

seq1  GAAAAATTAACAAAGAAGGGTGTGCAGTAGGTTTGGAGGAGATAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAACAAAGAAGGGTGTGCAGTAGGTTTGGAGGAGATAAAAAAG  300

seq1  GAAAAAATGCAGTAATCACTTCAAAAAATAGGCAAAATGATTTTTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGCAGTAATCACTTCAAAAAATAGGCAAAATGATTTTTAAAGA  350

seq1  CATTAGGCAGGACATGGAGATTTCATAGTAATCATTGCCAATGTTTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCAGGACATGGAGATTTCATAGTAATCATTGCCAATGTTTTAGT  400

seq1  TATTTCTCATTCAAACTGTTGTATTTTCTCTTACTCTTCGTTAATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCATTCAAACTGTTGTATTTTCTCTTACTCTTCGTTAATTAATA  450

seq1  ATTAATCATTTTCTCATATAGTCAGAAATTTATTTTGGCTGGAGTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCATTTTCTCATATAGTCAGAAATTTATTTTGGCTGGAGTGATGA  500

seq1  TGGTGCCTGCCTGTAATCACAGGCGGCAGAGGTGAGAGATCACCGCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTGCCTGTAATCACAGGCGGCAGAGGTGAGAGATCACCGCAAGT  550

seq1  CCAAGGCCAATAAATTCTACATAGTAAGTTCCAGGTTAGCCAAGGCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCAATAAATTCTACATAGTAAGTTCCAGGTTAGCCAAGGCTGTA  600

seq1  TAGTCTTTTCTAATCCTGTCTCAGAGTCTGGCTCTGTCTTTATTGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTTCTAATCCTGTCTCAGAGTCTGGCTCTGTCTTTATTGATTAA  650

seq1  TTTTTTTTAATTTGAAACTATAGAACCAAAATGTCCTTTTCTTGTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATTTGAAACTATAGAACCAAAATGTCCTTTTCTTGTAGAAA  700

seq1  AAGCAAAAACCTGTGATTAAATATAATAAAAATGTCATGTTTTTCTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAACCTGTGATTAAATATAATAAAAATGTCATGTTTTTCTCAGC  750

seq1  TGAACCATATTGACCATCA-CTTTCATAAGTTGATCTTTGTTAACTTGCT  799
      ||||||||||||||||||| |||||  |||||||||||||||||||||||
seq2  TGAACCATATTGACCATCACCTTTCCCAAGTTGATCTTTGTTAACTTGCT  800

seq1  GGTATTTGATTTTACATAGCACAGACACAAACACACCCACACATACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGATTTTACATAGCACAGACACAAACACACCCACACATACACAC  850

seq1  ACATGCACTCACACATGCACACACACACACACACTTTCTCTCTCTAGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACTCACACATGCACACACACACACACACTTTCTCTCTCTAGGCT  900

seq1  GAGTGAAAAACTGCTAATCATACATATAATTTCTTTCAATATATAACTTG  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGTGAAAAACTGCTAATCATACATATAATTTCTTTCATTATATAACTTG  950

seq1  CTTTA-TTTTATAAAGTCTGAACTCA-TCAAGTTGTAG-TATGTGTTTC-  995
      ||||| |||||||||||||||||||| ||||||||||| |||||||||| 
seq2  CTTTATTTTTATAAAGTCTGAACTCATTCAAGTTGTAGTTATGTGTTTCA  1000

seq1  AGA-CAATGGAAATA--GAGC--TATGAACAACACAGGCAAG-ATA-TCC  1038
      ||| |||||||||||   |||  ||||||||||||  ||||| ||| |||
seq2  AGACCAATGGAAATAAGAAGCCTTATGAACAACACTAGCAAGAATATTCC  1050

seq1  TCATT---TGTCTTATTC-ACA-TTACATGACAACCA-TCA-CGGAAGGT  1081
      |||||   | ||||| || ||| |||||||||||||| ||| || ||| |
seq2  TCATTTTGTCTCTTAATCTACATTTACATGACAACCATTCACCGAAAGTT  1100

seq1  CAAACCACAACT-CACTCTA-TGCAAACTTAATAGCATCCTAGCCTTTG-  1128
      ||||||||| || ||||||| |||||||| ||||||||||||||||||| 
seq2  CAAACCACATCTCCACTCTATTGCAAACTAAATAGCATCCTAGCCTTTGT  1150

seq1  TGAGTG-TTTTGT-GCTGTTT  1147
      |||||| |||||| |||||||
seq2  TGAGTGTTTTTGTGGCTGTTT  1171


seq1: chr13_107132739_107133213
seq2: B6Ng01-243P20.g_67_541 (reverse)

seq1  ACACAACACAACACAACACAAAACAAAACAAAACAAAACAAAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACACAACACAACACAAAACAAAACAAAACAAAACAAAAAACAAAA  50

seq1  CAAAACAACACAAAACAATATACTGAACATACACCCAGATCTTAGGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACACAAAACAATATACTGAACATACACCCAGATCTTAGGATAG  100

seq1  CAATACCAGAATTGTTGGTGGAGATTTCTAACATCCTTTCAAACCATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAGAATTGTTGGTGGAGATTTCTAACATCCTTTCAAACCATAGC  150

seq1  TTCCTAACTATTATATACATTTATGTACTTTATTTTAGATATTGTCGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTATTATATACATTTATGTACTTTATTTTAGATATTGTCGTAT  200

seq1  TTAAATACATATTATAAAAGTAATGATTCATAAAAGAAATAATCCAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACATATTATAAAAGTAATGATTCATAAAAGAAATAATCCAGAGC  250

seq1  TAAATAAAAACACTGAAATATATGAGGTAGAAAGCAATTTTCTTGGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAACACTGAAATATATGAGGTAGAAAGCAATTTTCTTGGGTAG  300

seq1  AGTCTCCACTGGTTTTTGTGAGTTCACTTCGCTGGTGACTTATTCTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCACTGGTTTTTGTGAGTTCACTTCGCTGGTGACTTATTCTGAGT  350

seq1  GGTGTTGTTTTATCATCCACACCAGATTTCCCATTGGAATCAACATTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTTTTATCATCCACACCAGATTTCCCATTGGAATCAACATTCAC  400

seq1  ATTGAAATAGAGTCTGTTCGGTGTTTCCTACACAGAATAGCAGCCTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATAGAGTCTGTTCGGTGTTTCCTACACAGAATAGCAGCCTGTCA  450

seq1  AAGCTACAGGAGCCTTCTGGAATTC  475
      |||||||||||||||||||||||||
seq2  AAGCTACAGGAGCCTTCTGGAATTC  475


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