BAC Information

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BAC

Clone NameB6Ng01-244A23
Chromosome13 (Build37)
Map Location 21,893,697 - 21,894,856
singlet/doubletsinglet
Overlap genenone
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp
Downstream geneLOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244A23.bB6Ng01-244A23.g
ACCGA053287GA053288
length4941,137
definitionB6Ng01-244A23.b B6Ng01-244A23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcaaccgaggaataccgaatggctgagaagcacctgaaaaaatgttcaac
atccttaatcatcagggaaatgtaaatcaaaactctgagattccacctca
caccagtcagaatggctaagatcaaaaattcagatgctggcgaggatgtg
gagaaagaggaatgctcctccattgctggtgggattgcaagctggtatat
ccactctggaagttagtctggaggttcctcagaaaattggacataatact
accggaagatcgagcaatacctttcctgggcatatacccagaagaaggtc
caactggtaataagaacacatggtccactatgttcatagcagccttattt
tttttccattttttattaggtatttagatcatttacatttccaatgctat
accaaaagtcccccatacccacccacccccactcctctacccacccactc
cctctctttggccctggcgttcccctgtactggggcatataaag
gaattcccctaatttacaagaaaagctgggccttagagtccattcccaga
atgggagacccctgcattcaggaaagtcagctgaaaaagcactctttgct
ggtgcatactacttgagtagggtactattcttcgtcgattctcaaaccct
gacatgaagagatgaaggcatagtgtaaaatgaaattgggaagaaagcag
aatgactttaaatcaaactcaacagaagctatcctaagctctgggacgat
caaaagcagaaagtttatacacctggggagattttgaactcctactgtga
gtcactcctggaaagactggagctaaaaccaaaacagtcctggccttcct
taggacatgatgtgtggactagagaggcgagtttatgaagcaagaggtgg
actttgaggagctgtgagaaggggaaacacagatggggtacccaagcccc
ctaaagggaagctcgtgcagaaatgagggagaacgtctggaaggtcagag
ttaatatttgaggtgtgaatggagatcttgaggagaacaatgattgaaac
tcgaaaggggaaagacctgttagctttggtctaacctttgacccagtctc
aggaggctgtcgtctacagagttgtcactagagaaataagcaattgtgca
atttgtttagaaaaaaaaaaaaagaataaaaacaaacaaaaagacaaaca
tcgccccaaacaaaaccaaaaggactccaaacaactcgtgttttaaagga
tgtctatggttttgtgctgtggctcgttcactgtgactttcagctgcaga
ggctttccctaaccggaaccagagccacagcccaagaaaccagcagctgt
tgactggacacaggtggcctgagcagagtggctgaaccgctgggctcttg
ctgtgtggagactgggagagagccacagtttattgcttcacgtaggtact
ctcacttctcaggtacaaacgttcttttctgatagggaaaaaataggcat
ttattagagcgcacacacgtggtgtattcttttccgggataagaagatgg
cttgaacgttactttctcactccacacagatgtgattccgaatgacagct
tcctgcagttgattctgacctgtccttagacttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21893697_21894856
seq2: B6Ng01-244A23.g_65_1201

seq1  GAATTCCCCTAATTTACAAGAAAAGCTGGGCCTTAGAGTCCATTCCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAATTTACAAGAAAAGCTGGGCCTTAGAGTCCATTCCCAGA  50

seq1  ATGGGAGACCCCTGCATTCAGGAAAGTCAGCTGAAAAAGCACTCTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGACCCCTGCATTCAGGAAAGTCAGCTGAAAAAGCACTCTTTGCT  100

seq1  GGTGCATACTACTTGAGTAGGGTACTATTCTTCGTCGATTCTCAAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATACTACTTGAGTAGGGTACTATTCTTCGTCGATTCTCAAACCCT  150

seq1  GACATGAAGAGATGAAGGCATAGTGTAAAATGAAATTGGGAAGAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAGAGATGAAGGCATAGTGTAAAATGAAATTGGGAAGAAAGCAG  200

seq1  AATGACTTTAAATCAAACTCAACAGAAGCTATCCTAAGCTCTGGGACGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTAAATCAAACTCAACAGAAGCTATCCTAAGCTCTGGGACGAT  250

seq1  CAAAAGCAGAAAGTTTATACACCTGGGGAGATTTTGAACTCCTACTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGAAAGTTTATACACCTGGGGAGATTTTGAACTCCTACTGTGA  300

seq1  GTCACTCCTGGAAAGACTGGAGCTAAAACCAAAACAGTCCTGGCCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCTGGAAAGACTGGAGCTAAAACCAAAACAGTCCTGGCCTTCCT  350

seq1  TAGGACATGATGTGTGGACTAGAGAGGCGAGTTTATGAAGCAAGAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATGATGTGTGGACTAGAGAGGCGAGTTTATGAAGCAAGAGGTGG  400

seq1  ACTTTGAGGAGCTGTGAGAAGGGGAAACACAGATGGGGTACCCAAGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGGAGCTGTGAGAAGGGGAAACACAGATGGGGTACCCAAGCCCC  450

seq1  CTAAAGGGAAGCTCGTGCAGAAATGAGGGAGAACGTCTGGAAGGTCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGAAGCTCGTGCAGAAATGAGGGAGAACGTCTGGAAGGTCAGAG  500

seq1  TTAATATTTGAGGTGTGAATGGAGATCTTGAGGAGAACAATGATTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTGAGGTGTGAATGGAGATCTTGAGGAGAACAATGATTGAAAC  550

seq1  TCGAAAGGGGAAAGACCTGTTAGCTTTGGTCTAACCTTTGACCCAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGGGGAAAGACCTGTTAGCTTTGGTCTAACCTTTGACCCAGTCTC  600

seq1  AGGAGGCTGTCGTCTACAGAGTTGTCACTAGAGAAATAAGCAATTGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTGTCGTCTACAGAGTTGTCACTAGAGAAATAAGCAATTGTGCA  650

seq1  ATTTGTTTAGAAAAAAAAAAAAAGAATAAAAACAAACAAAAAGACAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAGAAAAAAAAAAAAAGAATAAAAACAAACAAAAAGACAAACA  700

seq1  TCGCCCCAAACAAAACCAAAAGGACTCCAAACAACTCGTGTTTT-AAGGA  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCGCCCCAAACAAAACCAAAAGGACTCCAAACAACTCGTGTTTTAAAGGA  750

seq1  TGTCTATGGTTTTGTGCTGTGGCTCGTTCACTGTGACTTTCAGCTGCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGGTTTTGTGCTGTGGCTCGTTCACTGTGACTTTCAGCTGCAGA  800

seq1  GGCTTTCCCTAACCGGAACCAGAGCCACAGCCCAAGAAACCAGCAGCTG-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCTTTCCCTAACCGGAACCAGAGCCACAGCCCAAGAAACCAGCAGCTGT  850

seq1  TGACTGGACACA-GTGGCCTGAGCAAGAGTGGCTGAACCGCTGGGCTCCT  897
      |||||||||||| ||||||||||| |||||||||||||||||||||| ||
seq2  TGACTGGACACAGGTGGCCTGAGC-AGAGTGGCTGAACCGCTGGGCT-CT  898

seq1  TGCTGTGTGGAGACTGGGAGAAGAGCACAAGTTTATTGCCTTCACGTTAG  947
      |||||||||||||||||||| |||||   ||||||||| ||||||| |||
seq2  TGCTGTGTGGAGACTGGGAG-AGAGCCACAGTTTATTG-CTTCACG-TAG  945

seq1  GTACTTCTCACTTCTCAGGTACAAACGTTC-TTTCTGATAGGGGAAAAAA  996
      |||| ||||||||||||||||||||||||| ||||||||||||  |||||
seq2  GTAC-TCTCACTTCTCAGGTACAAACGTTCTTTTCTGATAGGG--AAAAA  992

seq1  ATAGGCATTTATTTAGAGCGCACACACGT-GTGTATTCTTTTCCGGGAAT  1045
      ||||||||||| ||||||||||||||||| ||||||||||||||||| ||
seq2  ATAGGCATTTA-TTAGAGCGCACACACGTGGTGTATTCTTTTCCGGG-AT  1040

seq1  AAGAAGATGCCTGAAACGTAACCTTTCTCACTCACAC-CAGAATGTGGGT  1094
      ||||||||| ||  ||||| | ||||||||||| ||| ||| |||| | |
seq2  AAGAAGATGGCTTGAACGTTA-CTTTCTCACTC-CACACAG-ATGT-GAT  1086

seq1  TCCAGAAATTGGGCAGGCTCCCTGCAGTGTTGATTTCTGACCATGGGTCT  1144
      ||| |||    | || ||| ||||||  ||||| ||||||||     | |
seq2  TCC-GAA---TGACA-GCTTCCTGCA--GTTGA-TTCTGACC-----TGT  1123

seq1  CCTTAGACATTTCTGA  1160
      ||||||||  ||||||
seq2  CCTTAGAC--TTCTGA  1137