BAC Information

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BAC

Clone NameB6Ng01-244E06
Chromosome13 (Build37)
Map Location 80,302,670 - 80,471,440
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244E06.bB6Ng01-244E06.g
ACCGA053444GA053445
length1,0361,079
definitionB6Ng01-244E06.b B6Ng01-244E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,470,405 - 80,471,440)(80,302,670 - 80,303,747)
sequence
gaattcaagtaccaattacattttcgctaatttgtaattcaccctgctaa
gatcttgcaccagctcatttaaggctccttgtcctttcaaaaggagacaa
attgggtgtgaagggccaaatacagtcctattctttccttaaattctctg
gtattgcttatttctttagcatgtgaaaccttttgagatgaaaacatttt
agaaatgttgttcttagaatataacagtggcttggtttgtaggactgggc
actacatctagtctttcctatacttctgtgatacaagctttgttctgttt
gtgcagaaactgaggtttatttagtgtactggccagtttaatatcaactt
gatacaagctagtgtcttcagagaaggcagaatttccactgtgaaaatgt
cttcatgagattgggctgtaggcaagcccattgttcattttcttaattcg
tgatgtatggtaaaagcctcaaccaattatgggtgcttcaatccctgggc
tggtgatcctaagttctattagaaaacaagctgaacaagctatgagaagc
aagcctgtaaggagcgacccttcatgtcctttgcatcagctactgctttg
gggttcctgccctgcatgagttccttctgattttaaactgttgcatggaa
gtatgagcataataaacctttccattcctgaattgcttttggtcatggtg
tttcatcacagcaataataaccctaattaagacaggtgccagctcagtgg
ttgtagcacacacctttagccctagcacttaggactaggcaggagctgtg
tatctgaacttgaaatcatccaagcatatcaagaaaattccagggcagcc
agggctacacaaaaatcctgtctcagaaaaaaaaaataaacaaaacaaaa
gaaaaccctttgcttttctcatggaattagtctgtgaccctgggtcacca
atgatgttgaactggattctatgaaaagctaaatctatactgcttcaatg
tttacattacattttaaaaataaaaattccagacat

gaattctttgctttgatgggaaccttcctcctgtgagatgctttgtcaca
gcaatgggaaacagattaaagcacaagtaagaacatgtggtatttttctc
tacctggttcattacatttattttatttcatagcagcatcccacactgtt
gcagatgactttcataaaaagaagaattgcagtattagcaaggttgagaa
ctactactctaagggttaaggattttcatatgaatgaacatttcaagagt
tcaagttgtacacaatagcaaggacaagctttatgtgcaaaaccatgtgt
tatttcagagagacatataaagaaaagcttaaacatttaattgaccaaca
acaacaagcaataatgagtaatctgaaggaaacacactcctgttccctac
atctgggagccacaagaaaacatattccaagatcaatttctttctttgat
aaaactgagggcacaacaccctcagttttcttggaattttctcacatcca
gtcagaagtttgctcatatgattccatttctggactatgtttccaactca
cctttacatacccagtgttgtcctggcttagttcattttacccagtaatg
ttaatttatgggaatagcatctattattcctaatagatacaagctcaaag
caaatttagtgccctcctgattcttagactctttccaatacctttcccag
agtttcagattttaaactgaaacttcacacatcctaatcaatgtgtcact
ttactcactctctcagtggtaaataattaaatgttctgatctcacagtct
atccccagcatttgttttcttataggtacctgaagatactcattttgagt
gttgtgggatagaatttaagctatttttaatatctctttccctcataatt
aaggatgatgaacatacttttaaatattacacatttgtatttgtattact
tcttcttgagaaagaactctctggtcagccattcagtttacttttaaaaa
aataagatatggttttgggatagcatgggaatgtattggaggaaaaatat
gtaataaaaaaatattttaaaaaaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80470405_80471440
seq2: B6Ng01-244E06.b_42_1077 (reverse)

seq1  ATGTCTGGAA-TTTTATTTTTAAAATGTAATTGTAAACATTGAAGCAGTA  49
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  ATGTCTGGAATTTTTATTTTTAAAATGTAA-TGTAAACATTGAAGCAGTA  49

seq1  TAGATTTAGCTTTTCATAGAATCCAGTTCAACATCATTGGTGACCCAGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTAGCTTTTCATAGAATCCAGTTCAACATCATTGGTGACCCAGGG  99

seq1  TCACAGACTAATTCCATGAGAAAAGCAAAGGGTTTTCTTTTGTTTTGTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACTAATTCCATGAGAAAAGCAAAGGGTTTTCTTTTGTTTTGTTT  149

seq1  ATTTTTTTTTTCTGAGACAGGATTTTTGTGTAGCCCTGGCTGCCCTGGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTCTGAGACAGGATTTTTGTGTAGCCCTGGCTGCCCTGGAA  199

seq1  TTTTCTTGATATGCTTGGATGATTTCAAGTTCAGATACACAGCTCCTGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGATATGCTTGGATGATTTCAAGTTCAGATACACAGCTCCTGCC  249

seq1  TAGTCCTAAGTGCTAGGGCTAAAGGTGTGTGCTACAACCACTGAGCTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTAAGTGCTAGGGCTAAAGGTGTGTGCTACAACCACTGAGCTGGC  299

seq1  ACCTGTCTTAATTAGGGTTATTATTGCTGTGATGAAACACCATGACCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTTAATTAGGGTTATTATTGCTGTGATGAAACACCATGACCAAA  349

seq1  AGCAATTCAGGAATGGAAAGGTTTATTATGCTCATACTTCCATGCAACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTCAGGAATGGAAAGGTTTATTATGCTCATACTTCCATGCAACAG  399

seq1  TTTAAAATCAGAAGGAACTCATGCAGGGCAGGAACCCCAAAGCAGTAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCAGAAGGAACTCATGCAGGGCAGGAACCCCAAAGCAGTAGCT  449

seq1  GATGCAAAGGACATGAAGGGTCGCTCCTTACAGGCTTGCTTCTCATAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGGACATGAAGGGTCGCTCCTTACAGGCTTGCTTCTCATAGCT  499

seq1  TGTTCAGCTTGTTTTCTAATAGAACTTAGGATCACCAGCCCAGGGATTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTTGTTTTCTAATAGAACTTAGGATCACCAGCCCAGGGATTGA  549

seq1  AGCACCCATAATTGGTTGAGGCTTTTACCATACATCACGAATTAAGAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCATAATTGGTTGAGGCTTTTACCATACATCACGAATTAAGAAAA  599

seq1  TGAACAATGGGCTTGCCTACAGCCCAATCTCATGAAGACATTTTCACAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATGGGCTTGCCTACAGCCCAATCTCATGAAGACATTTTCACAGT  649

seq1  GGAAATTCTGCCTTCTCTGAAGACACTAGCTTGTATCAAGTTGATATTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCTGCCTTCTCTGAAGACACTAGCTTGTATCAAGTTGATATTAA  699

seq1  ACTGGCCAGTACACTAAATAAACCTCAGTTTCTGCACAAACAGAACAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGTACACTAAATAAACCTCAGTTTCTGCACAAACAGAACAAAG  749

seq1  CTTGTATCACAGAAGTATAGGAAAGACTAGATGTAGTGCCCAGTCCTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATCACAGAAGTATAGGAAAGACTAGATGTAGTGCCCAGTCCTACA  799

seq1  AACCAAGCCACTGTTATATTCTAAGAACAACATTTCTAAAATGTTTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCACTGTTATATTCTAAGAACAACATTTCTAAAATGTTTTCAT  849

seq1  CTCAAAAGGTTTCACATGCTAAAGAAATAAGCAATACCAGAGAATTTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGTTTCACATGCTAAAGAAATAAGCAATACCAGAGAATTTAAG  899

seq1  GAAAGAATAGGACTGTATTTGGCCCTTCACACCCAATTTGTCTCCTTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATAGGACTGTATTTGGCCCTTCACACCCAATTTGTCTCCTTTTG  949

seq1  AAAGGACAAGGAGCCTTAAATGAGCTGGTGCAAGATCTTAGCAGGGTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAGGAGCCTTAAATGAGCTGGTGCAAGATCTTAGCAGGGTGAA  999

seq1  TTACAAATTAGCGAAAATGTAATTGGTACTTGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTAGCGAAAATGTAATTGGTACTTGAATTC  1036


seq1: chr13_80302670_80303747
seq2: B6Ng01-244E06.g_63_1141

seq1  GAATTCTTTGCTTTGATGGGAACCTTCCTCCTGTGAGATGCTTTGTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTTGATGGGAACCTTCCTCCTGTGAGATGCTTTGTCACA  50

seq1  GCAATGGGAAACAGATTAAAGCACAAGTAAGAACATGTGGTATTTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGAAACAGATTAAAGCACAAGTAAGAACATGTGGTATTTTTCTC  100

seq1  TACCTGGTTCATTACATTTATTTTATTTCATAGCAGCATCCCACACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTTCATTACATTTATTTTATTTCATAGCAGCATCCCACACTGTT  150

seq1  GCAGATGACTTTCATAAAAAGAAGAATTGCAGTATTAGCAAGGTTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGACTTTCATAAAAAGAAGAATTGCAGTATTAGCAAGGTTGAGAA  200

seq1  CTACTACTCTAAGGGTTAAGGATTTTCATATGAATGAACATTTCAAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTCTAAGGGTTAAGGATTTTCATATGAATGAACATTTCAAGAGT  250

seq1  TCAAGTTGTACACAATAGCAAGGACAAGCTTTATGTGCAAAACCATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGTACACAATAGCAAGGACAAGCTTTATGTGCAAAACCATGTGT  300

seq1  TATTTCAGAGAGACATATAAAGAAAAGCTTAAACATTTAATTGACCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGAGAGACATATAAAGAAAAGCTTAAACATTTAATTGACCAACA  350

seq1  ACAACAAGCAATAATGAGTAATCTGAAGGAAACACACTCCTGTTCCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGCAATAATGAGTAATCTGAAGGAAACACACTCCTGTTCCCTAC  400

seq1  ATCTGGGAGCCACAAGAAAACATATTCCAAGATCAATTTCTTTCTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAGCCACAAGAAAACATATTCCAAGATCAATTTCTTTCTTTGAT  450

seq1  AAAACTGAGGGCACAACACCCTCAGTTTTCTTGGAATTTTCTCACATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAGGGCACAACACCCTCAGTTTTCTTGGAATTTTCTCACATCCA  500

seq1  GTCAGAAGTTTGCTCATATGATTCCATTTCTGGACTATGTTTCCAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGTTTGCTCATATGATTCCATTTCTGGACTATGTTTCCAACTCA  550

seq1  CCTTTACATACCCAGTGTTGTCCTGGCTTAGTTCATTTTACCCAGTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACATACCCAGTGTTGTCCTGGCTTAGTTCATTTTACCCAGTAATG  600

seq1  TTAATTTATGGGAATAGCATCTATTATTCCTAATAGATACAAGCTCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATGGGAATAGCATCTATTATTCCTAATAGATACAAGCTCAAAG  650

seq1  CAAATTTAGTGCCCTCCTGATTCTTAGACTCTTTCCAATACCTTTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGTGCCCTCCTGATTCTTAGACTCTTTCCAATACCTTTCCCAG  700

seq1  AGTTTCAGATTTTAAACTGAAACTTCACACATCCTAATCAATGTGTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGATTTTAAACTGAAACTTCACACATCCTAATCAATGTGTCACT  750

seq1  TTACTCACTCTCTCAGTGGTAAATAATTAAATGTTCTGATCTCACAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCACTCTCTCAGTGGTAAATAATTAAATGTTCTGATCTCACAGTCT  800

seq1  AT-CCCAGCATTTGTTTTCTTATAGGTACCTGAAGATACTCATTTTGAGT  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGCATTTGTTTTCTTATAGGTACCTGAAGATACTCATTTTGAGT  850

seq1  GTTGTGGGATAGAATTTAAGCTATTTTTAATATCTCTTTCCCTCATAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGGATAGAATTTAAGCTATTTTTAATATCTCTTTCCCTCATAATT  900

seq1  AAGGATGATGAACATACTTTTAAATATTACACATTTGTATTTGTATTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGATGAACATACTTTTAAATATTACACATTTGTATTTGTATTACT  950

seq1  TCTTCTTTGAGAAAGAACTCTCTGGTCAGCCATTCAGTTTACTTTTAAAA  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTC-TTGAGAAAGAACTCTCTGGTCAGCCATTCAGTTTACTTTTAAAA  999

seq1  ACATAAGATATGGTTTTGGGATAGCATTGGAAATGTAATTGAGG-AAAAT  1048
      | |||||||||||||||||||||||| ||| |||||| | |||| |||||
seq2  AAATAAGATATGGTTTTGGGATAGCA-TGGGAATGTATTGGAGGAAAAAT  1048

seq1  ATGTAAT-AAAAAATATTTTAAAAAAAGATG  1078
      ||||||| |||||||||||||||||||||||
seq2  ATGTAATAAAAAAATATTTTAAAAAAAGATG  1079


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