BAC Information

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BAC

Clone NameB6Ng01-245J04
Chromosome13 (Build37)
Map Location 96,996,022 - 97,159,852
singlet/doubletdoublet
Overlap geneLOC667582, 1200014M14Rik
Upstream genePde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
Downstream gene9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245J04.bB6Ng01-245J04.g
ACCGA054421GA054422
length1,1421,143
definitionB6Ng01-245J04.b B6Ng01-245J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,996,022 - 96,996,724)(97,158,728 - 97,159,852)
sequence
gaattctttgtttagctctgtaccctgtcctgagcttttgtccccgccca
gcaggaacgcacacaggacacagatccttggttactttatttcacaacat
aatgaggtagacaaagaaggctcagaaaagtgtgtggcttaaatacccta
aggcgtgatgtgtttaactaggactggtagcttaacccacgattctcatg
caccctggggataggctatagcccccaggggttgggctagtgccctggga
gatggactggtgccctggaaatgggctggtgactttttggcgggcttttg
ctcttagcacatgcgcacatagctattctttgtttaggtggcataaggca
ctgcggagccagcgccatctatgatggtaaatgttattgcggctctccac
agtaccccatttttaatagggttatttggttctctgaagtctaacttctt
gagttctttgaatatattggatattaaccctctattgtatgtaggattgg
taaagatctttccccaatttgttggttgccttttgtcctattgacagtgt
cctttgccttacagaagctttgtaattttatgaggtcccatttaatgaac
ccacacacttatggtcacttgatctttgatgaaggagctaaaaccatcca
gtggggaaaagacaacattttcaacaaatggtgttggttcaactgctggt
cagcatgtagaagaatgcaaaattgactcatttcctatctccttgtacaa
agctcaaatacaagtggatcaagggaccctccacataaaaccagatacac
ggaaactaatagaaagagaaagtggtgaaagagccttgaatacatgggca
cagggggaaaattttcctgaacaaaaacaccaatagcctattctctaaga
tcaagaattgaacaaatgggaccccttttttccattttcacagtaaccat
aatggtatgtatcccaaacctcagcccagaattccctaattaaaacaact
aaactccttggaaactaaattgtccttccgttgaatgatcttagaaacag
agatagatgttccagaatgctaattcctctttgataacccatctatctgt
gatcggggaatccctaaagcatcacactgtgtgtaccaacac
gaattcacaatggctaggatgtgcctttgcctgtattacaagcataggct
ggagatttagactgaggaggcattgacctcttggggtaatacgaaagaaa
tggggatggatgggattccccattgtggtaaaagaactgctatcctgcag
accaaacacaactgcacacacttttagaatataaacatatgtattttcta
gaaggatttttagattcaaacatgatttcaaaggagttcataatcctaac
agaggactgctctgagaagaggaacctaaaactgctagcttttaaggaac
agtgaagtgtcaggagaaagatgggaggcagccagaacaccggaattgtg
tggagagcagtatgagggtcactggccagaagggggcaaggaaggccccc
agcatgcagatcaggaggctgccttgacacccgtgacagtttcagctgcc
cctggagcaggcctcaattatagtttgctaagaaaacaattgagataaag
acactgaagaagaagggagagatgcagggaaaaccacagaatagaaagcc
agggtgcagccagaattgtgcaaagggaatttctcttttattcagcattg
gtatggttccagaggataagtaaactaagtctgagctgtgactgtctttc
attaagccatgcagggaagataaaataggcatggatctgcatcgaagaat
gaacacttcactagtctcaaatcaaccactgtggtaatttgatccgtttt
aattttaattacattttcccttatgacttgtttgcagacctggtaggcaa
ccagagttgggaattgtggattatttttagtaacaaatgagctgggtatg
atcagacgccaaaattgttttcttaaaaacatattgcgggtcagaaagcg
atcggactttgggaaaatacgttatcttgccattttatccctgctctttg
caaacaggcaggagaaattaacgtgagacgaaaacagtagcattttcgtc
agtttctgggttcagaagaatggtggctttaaagggtgacaacgcaccca
tttccactacattctcgggcacttctttaacctagcttgaaactacaaga
aatcctttgattgcttctccctttgctacttgtacaacttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96996022_96996724
seq2: B6Ng01-245J04.b_475_1187

seq1  GTTCTCTGAAGTCTAACTTCTTGAGTTCTTTGAATATATTGGATATTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGAAGTCTAACTTCTTGAGTTCTTTGAATATATTGGATATTAAC  50

seq1  CCTCTATTGTATGTAGGATTGGTAAAGATCTTTCCCCAATTTGTTGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTGTATGTAGGATTGGTAAAGATCTTTCCCCAATTTGTTGGTTG  100

seq1  CCTTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGTAATTT  150

seq1  TATGAGGTCCCATTTAATGAACCCACACACTTATGGTCACTTGATCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTCCCATTTAATGAACCCACACACTTATGGTCACTTGATCTTTG  200

seq1  ATGAAGGAGCTAAAACCATCCAGTGGGGAAAAGACAACATTTTCAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGCTAAAACCATCCAGTGGGGAAAAGACAACATTTTCAACAAA  250

seq1  TGGTGTTGGTTCAACTGCTGGTCAGCATGTAGAAGAATGC-AAATTGACT  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGTGTTGGTTCAACTGCTGGTCAGCATGTAGAAGAATGCAAAATTGACT  300

seq1  CA-TTCCTATCTCCTTGTACAAAGCTCAAATACAAGTGGATCAAGG--AC  346
      || |||||||||||||||||||||||||||||||||||||||||||   |
seq2  CATTTCCTATCTCCTTGTACAAAGCTCAAATACAAGTGGATCAAGGGACC  350

seq1  CTCCACATAAAACCAGATACACGGAAACTAATAG-AAGAGAAAGTGGTG-  394
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  CTCCACATAAAACCAGATACACGGAAACTAATAGAAAGAGAAAGTGGTGA  400

seq1  AAGAGCCTTGAATACATGGGCACAGGGG--AAATTTTCCTGAAC-AAAAC  441
      ||||||||||||||||||||||||||||  |||||||||||||| |||||
seq2  AAGAGCCTTGAATACATGGGCACAGGGGGAAAATTTTCCTGAACAAAAAC  450

seq1  ACCAATAGCCTATTCTCTAAGATCAAGAATTG-ACAAATGGGACCCC-TT  489
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  ACCAATAGCCTATTCTCTAAGATCAAGAATTGAACAAATGGGACCCCTTT  500

seq1  TTTCCATTTTCACAGTAACCATAAT-GTATGTATCCC-AACCTCAGCCCA  537
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TTTCCATTTTCACAGTAACCATAATGGTATGTATCCCAAACCTCAGCCCA  550

seq1  GAA-TCCCTAATTAAAACAAACACAACTCC-TGGAAACCAGAATGTCCTT  585
      ||| |||||||||||||| |||  |||||| ||||||| | | |||||||
seq2  GAATTCCCTAATTAAAAC-AACTAAACTCCTTGGAAACTAAATTGTCCTT  599

seq1  TCTGTGATGGTTCTAAGAACCAGAGATAGAGGTTTCAAGATGCTAATTCC  635
       |  |||  | ||| |||| |||||||||| ||| ||  ||||||||| |
seq2  CCGTTGAATGATCTTAGAAACAGAGATAGATGTTCCAGAATGCTAATT-C  648

seq1  CTCTTTGTTACCTCTTCTATTCTGTGTGTCCCGTGGATCCTCAAAAGCAT  685
      ||||||| || | | |||| ||||||     || |||  | | |||||||
seq2  CTCTTTGATAACCCATCTA-TCTGTG---ATCGGGGAATCCCTAAAGCAT  694

seq1  CACACTGTGTGTA-CAACA  703
      ||||||||||||| |||||
seq2  CACACTGTGTGTACCAACA  713

seq1: chr13_97158728_97159852
seq2: B6Ng01-245J04.g_69_1211 (reverse)

seq1  GTTAAGTTGTACCAGTAGCAAA--GAGAAGCATTCAAAG--TATCTTGTG  46
      |||||||||||| |||||||||  |||||||| ||||||  | |||||| 
seq2  GTTAAGTTGTACAAGTAGCAAAGGGAGAAGCAATCAAAGGATTTCTTGTA  50

seq1  GTTTCAGCTTAGGTTAAAG-AGTG-CCGAGAATGTAGTGGAA--TGGTGC  92
      ||||||   |||||||||| |||| |||||||||||||||||   |||||
seq2  GTTTCAAGCTAGGTTAAAGAAGTGCCCGAGAATGTAGTGGAAATGGGTGC  100

seq1  G-TGTCACCCTCTAAAG-CACCATTCTTCTGAACCCAGAAACTGAAG-AA  139
      | ||||||||| ||||| ||||||||||||||||||||||||||| | ||
seq2  GTTGTCACCCTTTAAAGCCACCATTCTTCTGAACCCAGAAACTGACGAAA  150

seq1  ATGCTACTGTTTTCGTCTCACGTT-ATTTCTCCTGCCTGTTTGCAAAGAG  188
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGCTACTGTTTTCGTCTCACGTTAATTTCTCCTGCCTGTTTGCAAAGAG  200

seq1  CAGGGAT-AAATGGC-AGATAACGTATTTTCCAAAAGTCCGATCGCTTTC  236
      ||||||| ||||||| |||||||||||||||| |||||||||||||||||
seq2  CAGGGATAAAATGGCAAGATAACGTATTTTCCCAAAGTCCGATCGCTTTC  250

seq1  TGA-CCGCAATATGTTTTTAAG-AAACAATTTTGGCGTCTGATCATA-CC  283
      ||| |||||||||||||||||| |||||||||||||||||||||||| ||
seq2  TGACCCGCAATATGTTTTTAAGAAAACAATTTTGGCGTCTGATCATACCC  300

seq1  AGCTCATTTGTTACT-AAAATAATCCACAATTCCCAACTCTGGTTGCCTA  332
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTCATTTGTTACTAAAAATAATCCACAATTCCCAACTCTGGTTGCCTA  350

seq1  CCAGGTCTGCAAACAAGTCATAAGGGAAAATGTAATTAAAATTAAAACGG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTGCAAACAAGTCATAAGGGAAAATGTAATTAAAATTAAAACGG  400

seq1  ATCAAATTACCACAGTGGTTGATTTGAGACTAGTGAAGTGTTCATTCTTC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTACCACAGTGGTTGATTTGAGACTAGTGAAGTGTTCATTCTTC  450

seq1  GATGCAGATCCATGCCTATTTTATCTTCCCTGCATGGCTTAATGAAAGAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGATCCATGCCTATTTTATCTTCCCTGCATGGCTTAATGAAAGAC  500

seq1  AGTCACAGCTCAGACTTAGTTTACTTATCCTCTGGAACCATACCAATGCT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGCTCAGACTTAGTTTACTTATCCTCTGGAACCATACCAATGCT  550

seq1  GAATAAAAGAGAAATTCCCTTTGCACAATTCTGGCTGCACCCTGGCTTTC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGAGAAATTCCCTTTGCACAATTCTGGCTGCACCCTGGCTTTC  600

seq1  TATTCTGTGGTTTTCCCTGCATCTCTCCCTTCTTCTTCAGTGTCTTTATC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTGGTTTTCCCTGCATCTCTCCCTTCTTCTTCAGTGTCTTTATC  650

seq1  TCAATTGTTTTCTTAGCAAACTATAATTGAGGCCTGCTCCAGGGGCAGCT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTTTTCTTAGCAAACTATAATTGAGGCCTGCTCCAGGGGCAGCT  700

seq1  GAAACTGTCACGGGTGTCAAGGCAGCCTCCTGATCTGCATGCTGGGGGCC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTCACGGGTGTCAAGGCAGCCTCCTGATCTGCATGCTGGGGGCC  750

seq1  TTCCTTGCCCCCTTCTGGCCAGTGACCCTCATACTGCTCTCCACACAATT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCCCCCTTCTGGCCAGTGACCCTCATACTGCTCTCCACACAATT  800

seq1  CCGGTGTTCTGGCTGCCTCCCATCTTTCTCCTGACACTTCACTGTTCCTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGTTCTGGCTGCCTCCCATCTTTCTCCTGACACTTCACTGTTCCTT  850

seq1  AAAAGCTAGCAGTTTTAGGTTCCTCTTCTCAGAGCAGTCCTCTGTTAGGA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTAGCAGTTTTAGGTTCCTCTTCTCAGAGCAGTCCTCTGTTAGGA  900

seq1  TTATGAACTCCTTTGAAATCATGTTTGAATCTAAAAATCCTTCTAGAAAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACTCCTTTGAAATCATGTTTGAATCTAAAAATCCTTCTAGAAAA  950

seq1  TACATATGTTTATATTCTAAAAGTGTGTGCAGTTGTGTTTGGTCTGCAGG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGTTTATATTCTAAAAGTGTGTGCAGTTGTGTTTGGTCTGCAGG  1000

seq1  ATAGCAGTTCTTTTACCACAATGGGGAATCCCATCCATCCCCATTTCTTT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTTCTTTTACCACAATGGGGAATCCCATCCATCCCCATTTCTTT  1050

seq1  CGTATTACCCCAAGAGGTCAATGCCTCCTCAGTCTAAATCTCCAGCCTAT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTACCCCAAGAGGTCAATGCCTCCTCAGTCTAAATCTCCAGCCTAT  1100

seq1  GCTTGTAATACAGGCAAAGGCACATCCTAGCCATTGTGAATTC  1125
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAATACAGGCAAAGGCACATCCTAGCCATTGTGAATTC  1143