BAC Information

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BAC

Clone NameB6Ng01-246G04
Chromosome13 (Build37)
Map Location 59,283,785 - 59,441,344
singlet/doubletdoublet
Overlap geneLOC100041533
Upstream geneUbqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2
Downstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246G04.bB6Ng01-246G04.g
ACCGA055013GA055014
length1,0571,160
definitionB6Ng01-246G04.b B6Ng01-246G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,283,785 - 59,284,845)(59,440,183 - 59,441,344)
sequence
gaattccacgcaatatgctttgttttctttagttaatatttgtgtatatt
ttcttttctctattctttattccttcccctgggcatattttattgttccc
tgaaagaagctctctttagtgtaccttgtatccacaaaaaaaaaaaaaaa
aaaaaaaaaaaaaacaacaacaaaaaaaaaaccttttacctttgtttctt
tgcaaacacctgacttcattgtgtgacttgcattatagttgttcatcttt
ggggagcggggtggtgccgtcactggcttgggatgtttaccatatcttcc
acctcaaacactccttggagctttgtggagacaatattctcagccctcct
ctccagctctgtctgaaggacacttccactccgtggagaatcccagtcac
agtgccacattttgtcatctcaaagatgtcattctactgccatctggctt
ccgtcatctccaatgaaaggttggctgttgacctaactgcttttcctctg
aggcatttcccatcacctcaactgcttcaggagttgaatttcaagttagt
ctggttctattattttacaaacagcaatgccattcctcccttctcccttc
cctccctccttcccttcttctacccctcccttttccctccttcccttcct
tcctcctttcttccctccctccctctgcctcctcttctttccccctcttc
cttctctccctctctttgtctccaacttagctagaattttgaaccgactc
agtctcccaaagcacatgtgtgcatttattctacctttaggtactttatg
ttctacaaatcatatacacggttttcaaccttgtagggtgcccccaaagt
aattctcttaaaaagatctagttagagaccacaatctgataccaaatata
cacatctcaagtccttacatgaaaatggcatgttgtaatactgtttgcat
aataacctatactaacctctggctactttaatcctttaatactaaattct
ttttaaagattattatttactttatgtatatggagtacactgtaggctat
cttcaga
gaattctggtaactctgcacaggttttacaactcgacttctgacattttt
gatcttgtggaacaatttgggttcctattactgttttaaaatgtttctca
ttgacagcaaatcaagcctcaggcagttaagaagggccttgctcctgata
aggagctcacagcatgcatcgtgagcctctggctcctacgttttttttct
actgcactttctgtaatgtgctgtgacctgggtacagggttgggccattg
acctaccatttggtctgggcaccccaggtcagttgagctctgcattctta
tgagttgtggattcctgtcctggtgtgtgtgctgtggagtgaagcatcct
tcacaaggagtgagagctacatttacttgtcggtagaagggcaagtatct
agaatgaagctttgtattacactggtttagggtccgtgacctcaaggacc
agtcataggtagttatctaggcttacaggtagggtgaaaataatataaat
atagtactcacacatgaaattctcaaaaataacgataaaggaaatgtaaa
acagtaggcttcaacagcttgcttgctctcctgttttcagaatgttagtt
ttgaagccacaagacccttctgaattcactgatgactgtaatagtctgct
gtcaacttgatataagactagagccagtcacctggggagagggaacctca
gctgaagaattacccagatcagattggcctgtgggtgtgtctgtgtgggc
attttctttattgccttgaagtcggagggctcaacttcctgtgggcggta
tcacccctgggcaggtgattggctgtttcaaaaggtgggtggttgggcaa
gccaataaacaggtctcctccaaagtttctgcttcaagtttgtgcttgag
ttctttcccatgattccctttcatgatggactgtaacctgggcacgcagg
atgaaataaacccctttcttctttaagtggcttctggtcgtggtgtgtgt
atcacagcacagaaagcagttagaaaaactggtcagctgacttcagctca
ttgcacccagctgaagctcttagcacatgttgaagaacggacattttcag
tgggttaacggatacacttctaaaacaaccggagagaatttccataagga
aacggtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59283785_59284845
seq2: B6Ng01-246G04.b_44_1100

seq1  GAATTCCACGCAATATGCTTTGTTTTCTTTAGTTAATATTTGTGTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGCAATATGCTTTGTTTTCTTTAGTTAATATTTGTGTATATT  50

seq1  TTCTTTTCTCTATTCTTTATTCCTTCCCCTGGGCATATTTTATTGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTCTATTCTTTATTCCTTCCCCTGGGCATATTTTATTGTTCCC  100

seq1  TGAAAGAAGCTCTCTTTAGTGTACCTTGTATCCAC-AAAAAAAAAAAAAA  149
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAAAGAAGCTCTCTTTAGTGTACCTTGTATCCACAAAAAAAAAAAAAAA  150

seq1  AAAAAAAAAAAAAACAACAACAAAAAAAAAACCTTTTACCTTTGTTTCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACAACAACAAAAAAAAAACCTTTTACCTTTGTTTCTT  200

seq1  TGCAGACACCTGACTTCATTGTGTGACTTGCATTATAGTTGTTCATCTTT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACACCTGACTTCATTGTGTGACTTGCATTATAGTTGTTCATCTTT  250

seq1  GGGGAGCGGGGTGGTGCCGTCACTGGCTTGGGATGTTTACCATATCTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCGGGGTGGTGCCGTCACTGGCTTGGGATGTTTACCATATCTTCC  300

seq1  ACCTCAAACACTCCTTGGAGCTTTGTGGAGACGATATTCTCAGCCCTCCT  349
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCTCAAACACTCCTTGGAGCTTTGTGGAGACAATATTCTCAGCCCTCCT  350

seq1  CTCCAGCTCTGTCTGAAGGACACTTCCACTCCGTGGAGAATCCCAGTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTCTGTCTGAAGGACACTTCCACTCCGTGGAGAATCCCAGTCAC  400

seq1  AGTGCCACATTTTGTCATCTCAAAGATGTCATTCTACTGCCATCTGGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACATTTTGTCATCTCAAAGATGTCATTCTACTGCCATCTGGCTT  450

seq1  CCGTCATCTCCAATGAAAGGTTGGCTGTTGACCTAACTGCTTTTCCTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCATCTCCAATGAAAGGTTGGCTGTTGACCTAACTGCTTTTCCTCTG  500

seq1  AGGCATTTCCCATCACCTCAACTGCTTCAGGAGTTGAATTTCAAGTTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTCCCATCACCTCAACTGCTTCAGGAGTTGAATTTCAAGTTAGT  550

seq1  CTGGTTCTATTATTTTACAAACAGCAATGCCATTCCTCCCTTCTCCCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTATTATTTTACAAACAGCAATGCCATTCCTCCCTTCTCCCTTC  600

seq1  CCTCCCTCCTTCCCTTCTTCTACCCCTCCCTTTTCCCTCCTTCCCTTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCTTCCCTTCTTCTACCCCTCCCTTTTCCCTCCTTCCCTTCCT  650

seq1  TCCTCCTTTCTTCCCTCCCTCCCTCTGCCTCCTCTTCTTTCCCCCTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTCTTCCCTCCCTCCCTCTGCCTCCTCTTCTTTCCCCCTCTTC  700

seq1  CTTCTCTCCCTCTCTTTGTCTCCAACTTAGCTAGAATTTTGAACCGACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCCTCTCTTTGTCTCCAACTTAGCTAGAATTTTGAACCGACTC  750

seq1  AGTCTCCCAAAGCACATGTGTGCATTTATTCTACCTTTAGGTACTTTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAAAGCACATGTGTGCATTTATTCTACCTTTAGGTACTTTATG  800

seq1  TTCTACAAATCATATACACGGTTTTCAA-CTTGTA-GGTGCCCCC-AAGT  846
      |||||||||||||||||||||||||||| |||||| ||||||||| ||||
seq2  TTCTACAAATCATATACACGGTTTTCAACCTTGTAGGGTGCCCCCAAAGT  850

seq1  AATTCTCTTAAAAAGATCTAGTTAGAGACCAC-ATCTGATACCAAATATA  895
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATTCTCTTAAAAAGATCTAGTTAGAGACCACAATCTGATACCAAATATA  900

seq1  CACATCTCAAGTCCTTTACATG-AAATGGCATGTTGT-ATACTGTTTGCA  943
      |||||||||||||| ||||||| |||||||||||||| ||||||||||||
seq2  CACATCTCAAGTCC-TTACATGAAAATGGCATGTTGTAATACTGTTTGCA  949

seq1  T-ATAACCTATACTAACCTCTTGTCTACTTTTAATTCTCTTTTTATTACT  992
      | |||||||||||||||||| || |||| |||||| |    |||| ||||
seq2  TAATAACCTATACTAACCTC-TGGCTAC-TTTAATCC----TTTAATACT  993

seq1  TATATTTCTTTTTTTTAAAGAATTATTTATTTACTTTATGTATAT-GAGT  1041
       |      || ||||||||| |||| ||||||||||||||||||| ||||
seq2  AA-----ATTCTTTTTAAAG-ATTA-TTATTTACTTTATGTATATGGAGT  1036

seq1  ACACTGTA-GCTATCTTCAGA  1061
      |||||||| ||||||||||||
seq2  ACACTGTAGGCTATCTTCAGA  1057

seq1: chr13_59440183_59441344
seq2: B6Ng01-246G04.g_66_1225 (reverse)

seq1  AAACACC--TTCCTTAT-GAAATTCT-TCTGTTTGTTTTATGGAGTGTAT  46
      |||||||  |||||||| |||||||| || | |||||||| | |||||||
seq2  AAACACCGTTTCCTTATGGAAATTCTCTCCGGTTGTTTTA-GAAGTGTAT  49

seq1  CCGTT-ACCCACTGGAAAATGTTCTGTCTTCAACATGTGCCTAAGAGCTC  95
      ||||| ||||||| |||||||| |  ||||||||||||| ||||||||| 
seq2  CCGTTAACCCACT-GAAAATGTCCGTTCTTCAACATGTG-CTAAGAGCTT  97

seq1  CAAGCTGGGTGCAATGAGCTGGAAGGTCAGGCTGACCAGTTTTTCTAACT  145
      | |||||||||||||||||||  | |||| ||||||||||||||||||| 
seq2  C-AGCTGGGTGCAATGAGCTG--AAGTCA-GCTGACCAGTTTTTCTAAC-  142

seq1  TGCTTTCTGTTGCTGTGATACACACACCACGACCAGAAGCCACTTAAAGA  195
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTG-TGCTGTGATACACACACCACGACCAGAAGCCACTTAAAGA  191

seq1  AGAAA-GGGTTTATTTCATCCTGCGTGCCCAGGTTACAGTCCATCATGAA  244
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGTTTATTTCATCCTGCGTGCCCAGGTTACAGTCCATCATGAA  241

seq1  AGGGAATCATGGGAAAGAACTCAAGCACAAACTTGAAGCAGAAACTTTGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCATGGGAAAGAACTCAAGCACAAACTTGAAGCAGAAACTTTGG  291

seq1  AGGAGACCTGTTTATTGGCTTGCCCAACCACCCACCTTTTG-AACAGCCA  343
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGAGACCTGTTTATTGGCTTGCCCAACCACCCACCTTTTGAAACAGCCA  341

seq1  ATCACCTGCCCAGGGGTGATACCGCCCACAGGAAGTTGAGCCCTCCGACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGCCCAGGGGTGATACCGCCCACAGGAAGTTGAGCCCTCCGACT  391

seq1  TCAAGGCAATAAAGAAAATGCCCACACAGACACACCCACAGGCCAATCTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCAATAAAGAAAATGCCCACACAGACACACCCACAGGCCAATCTG  441

seq1  ATCTGGGTAATTCTTCAGCTGAGGTTCCCTCTCCCCAGGTGACTGGCTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTAATTCTTCAGCTGAGGTTCCCTCTCCCCAGGTGACTGGCTCT  491

seq1  AGTCTTATATCAAGTTGACAGCAGACTATTACAGTCATCAGTGAATTCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATATCAAGTTGACAGCAGACTATTACAGTCATCAGTGAATTCAG  541

seq1  AAGGGTCTTGTGGCTTCAAAACTAACATTCTGAAAACAGGAGAGCAAGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTTGTGGCTTCAAAACTAACATTCTGAAAACAGGAGAGCAAGCA  591

seq1  AGCTGTTGAAGCCTACTGTTTTACATTTCCTTTATCGTTATTTTTGAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTGAAGCCTACTGTTTTACATTTCCTTTATCGTTATTTTTGAGAA  641

seq1  TTTCATGTGTGAGTACTATATTTATATTATTTTCACCCTACCTGTAAGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGTGAGTACTATATTTATATTATTTTCACCCTACCTGTAAGCC  691

seq1  TAGATAACTACCTATGACTGGTCCTTGAGGTCACGGACCCTAAACCAGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAACTACCTATGACTGGTCCTTGAGGTCACGGACCCTAAACCAGTG  741

seq1  TAATACAAAGCTTCATTCTAGATACTTGCCCTTCTACCGACAAGTAAATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAAGCTTCATTCTAGATACTTGCCCTTCTACCGACAAGTAAATG  791

seq1  TAGCTCTCACTCCTTGTGAAGGATGCTTCACTCCACAGCACACACACCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCACTCCTTGTGAAGGATGCTTCACTCCACAGCACACACACCAG  841

seq1  GACAGGAATCCACAACTCATAAGAATGCAGAGCTCAACTGACCTGGGGTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAATCCACAACTCATAAGAATGCAGAGCTCAACTGACCTGGGGTG  891

seq1  CCCAGACCAAATGGTAGGTCAATGGCCCAACCCTGTACCCAGGTCACAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCAAATGGTAGGTCAATGGCCCAACCCTGTACCCAGGTCACAGC  941

seq1  ACATTACAGAAAGTGCAGTAGAAAAAAAACGTAGGAGCCAGAGGCTCACG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAGAAAGTGCAGTAGAAAAAAAACGTAGGAGCCAGAGGCTCACG  991

seq1  ATGCATGCTGTGAGCTCCTTATCAGGAGCAAGGCCCTTCTTAACTGCCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTGTGAGCTCCTTATCAGGAGCAAGGCCCTTCTTAACTGCCTG  1041

seq1  AGGCTTGATTTGCTGTCAATGAGAAACATTTTAAAACAGTAATAGGAACC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGATTTGCTGTCAATGAGAAACATTTTAAAACAGTAATAGGAACC  1091

seq1  CAAATTGTTCCACAAGATCAAAAATGTCAGAAGTCGAGTTGTAAAACCTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTTCCACAAGATCAAAAATGTCAGAAGTCGAGTTGTAAAACCTG  1141

seq1  TGCAGAGTTACCAGAATTC  1162
      |||||||||||||||||||
seq2  TGCAGAGTTACCAGAATTC  1160