BAC Information

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BAC

Clone NameB6Ng01-247G12
Chromosome13 (Build37)
Map Location 64,233,634 - 64,322,127
singlet/doubletdoublet
Overlap geneZfp367, Habp4, Cdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G12.bB6Ng01-247G12.g
ACCGA055749GA055750
length1,066953
definitionB6Ng01-247G12.b B6Ng01-247G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,321,075 - 64,322,127)(64,233,634 - 64,234,584)
sequence
gaattctagtcagctttttcttggggtgagtgtggtgtagaacattaacg
gagtaacactttgggaatttcagagatgctgcctatggaagctgcagttt
ctatattacacttctcgactgttttcacgcagtaaagaaggtgagtgtct
tgcagaagatgaattcttctccacagggctgttagagttccttcagctgt
gtaaggtaccggttaacattaaagtgatcccaaaccaataaacagctcgt
tctaaatttctgattgtttctatgcttgaatgggatggaaagggcactta
cagacaggaggcaggctggggttgtcattcagttgggtgagcacttgctt
agcatgcgagaggccaagggtttaataccaacaccacaaaaacaaggcac
aagagagttaagtaatttggttttagctagagacagcgttagctttgagt
gtacctcatttaaagaaaaaaaaagttgaatactgttcccctccaagtta
tttttatgtatatacaacacagtaactgtcaggtgcagtggcagtgtcag
cttagcacatgcaacgtcctaagtccctcctgggcaccagcaatacagta
agtgtgaggctcagttttgtctctaggtgctttactttgaattcaacaga
atttggacaattaatttgttacaaagttttatataaaactaagtgtgtca
cagttgcagtcagaaagttgcaggaatgtggggggtgtgtggcatagggg
cttagcctttgaaaatgttcagcattgcatagagtactttctaggataca
tcctggttcttaatagaaaattggcatttttccttatgcctttgttcata
aacattttctttttggattttaggcaatgcagtatggcttcctttaattt
tcaactcatttaaaccttgacgaatatgaacactatgaaagtaagtttct
aggttacctgatttcagtctcttcttactctgcactttacccaagtgtcc
agtgatcaatatatcctgtattttcatcaccgttttgtgtgtgtgtgtgt
aatgtgtgtgaagaga
gaattccaggcatgtcagggttacaaagtgagaccctatttcaaaccata
attttaaagaaacagtaattcatactatgctttaaaaaaaagcctgaagg
ctgggtacatgatgtagctcagcagtaggatgcttgcatagtgtatatga
tactctgaagtcaacccacaacctcaaaaaagctgtctgagacaactgag
acaaagaatgtcaggttgagggttgtttctttcttttttttttggatcta
tccaatcatatctatctatctatctatctatctatctatctatctatcta
tctatctatctatctatctatctatctatctatctatccatccatccatc
catccatccatccatccatccatccatccatccatccatccatccatcca
tctatctatctatctatctatctatctatctatctatctatctatctatc
tatcatggtttttgtatttttgatagagaaacaaatgataaaaactgtaa
gaataaagccgggcatggtggcgcacgcctttaatcccagcactcgggag
gcagaggcaagtggatctcttgagttcgaggccagcctggtctacaaagt
gagttccaggacagccagggctatacagagaaaccctgtctcgaaaaacc
aagaagaaaaaaaaaaaaaaaaaaactgtaagaatgacccatgtacttta
tgctttaaattaaaataaaattttattcaaagcatcttttaaaattacag
catgtttattaatatgctgttaactctgccaaactacaacttagccatat
gaagcataaaacacttcaaaaatctgaatgtaaccacatttttaaaacaa
aaagcagtcataacacaccctccaattttagatgccaatgtattttgtcc
aagtacatagcttatatcaaacaaaataataactctttaaacatggccca
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64321075_64322127
seq2: B6Ng01-247G12.b_47_1112 (reverse)

seq1  TCTCTCTCACACACA-TACACACACACACACAAAACGGTGATG-AAATAC  48
      ||||| ||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TCTCT-TCACACACATTACACACACACACACAAAACGGTGATGAAAATAC  49

seq1  A-GATATATTGATCACT-GACACCTTGGTAAAGTGCAGAGTA--GAGAGA  94
      | ||||||||||||||| ||||| | ||||||||||||||||   |||||
seq2  AGGATATATTGATCACTGGACACTTGGGTAAAGTGCAGAGTAAGAAGAGA  99

seq1  CTGAAATCA-GTAACCTAG-AACTTAC-TTCATAGTGTTCATATTCGTCA  141
      ||||||||| ||||||||| ||||||| ||||||||||||||||||||||
seq2  CTGAAATCAGGTAACCTAGAAACTTACTTTCATAGTGTTCATATTCGTCA  149

seq1  AGG-TTAAATGAGTTG-AAATTAAA-GAAGCCATACTGCATTGCCTAAAA  188
      ||| |||||||||||| |||||||| ||||||||||||||||||||||||
seq2  AGGTTTAAATGAGTTGAAAATTAAAGGAAGCCATACTGCATTGCCTAAAA  199

seq1  TCC-AAAAGAAAATGTTTATGAACAAAGGCATAAGG-AAAATGCCAATTT  236
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCAAAAAGAAAATGTTTATGAACAAAGGCATAAGGAAAAATGCCAATTT  249

seq1  TCTATTAAGAACCAGGATGTATCCTAGAAAGTACTCTATGCAATGCTGAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAGAACCAGGATGTATCCTAGAAAGTACTCTATGCAATGCTGAA  299

seq1  CATTTTCAAAGGCTAAGCCCCTATGCCACACACCCCCCACATTCCTGCAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAAAGGCTAAGCCCCTATGCCACACACCCCCCACATTCCTGCAA  349

seq1  CTTTCTGACTGCAACTGTGACACACTTAGTTTTATATAAAACTTTGTAAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGACTGCAACTGTGACACACTTAGTTTTATATAAAACTTTGTAAC  399

seq1  AAATTAATTGTCCAAATTCTGTTGAATTCAAAGTAAAGCACCTAGAGACA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTGTCCAAATTCTGTTGAATTCAAAGTAAAGCACCTAGAGACA  449

seq1  AAACTGAGCCTCACACTTACTGTATTGCTGGTGCCCAGGAGGGACTTAGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCCTCACACTTACTGTATTGCTGGTGCCCAGGAGGGACTTAGG  499

seq1  ACGTTGCATGTGCTAAGCTGACACTGCCACTGCACCTGACAGTTACTGTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGCATGTGCTAAGCTGACACTGCCACTGCACCTGACAGTTACTGTG  549

seq1  TTGTATATACATAAAAATAACTTGGAGGGGAACAGTATTCAACTTTTTTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATACATAAAAATAACTTGGAGGGGAACAGTATTCAACTTTTTTT  599

seq1  TTCTTTAAATGAGGTACACTCAAAGCTAACGCTGTCTCTAGCTAAAACCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAATGAGGTACACTCAAAGCTAACGCTGTCTCTAGCTAAAACCA  649

seq1  AATTACTTAACTCTCTTGTGCCTTGTTTTTGTGGTGTTGGTATTAAACCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTAACTCTCTTGTGCCTTGTTTTTGTGGTGTTGGTATTAAACCC  699

seq1  TTGGCCTCTCGCATGCTAAGCAAGTGCTCACCCAACTGAATGACAACCCC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCTCGCATGCTAAGCAAGTGCTCACCCAACTGAATGACAACCCC  749

seq1  AGCCTGCCTCCTGTCTGTAAGTGCCCTTTCCATCCCATTCAAGCATAGAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCTCCTGTCTGTAAGTGCCCTTTCCATCCCATTCAAGCATAGAA  799

seq1  ACAATCAGAAATTTAGAACGAGCTGTTTATTGGTTTGGGATCACTTTAAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGAAATTTAGAACGAGCTGTTTATTGGTTTGGGATCACTTTAAT  849

seq1  GTTAACCGGTACCTTACACAGCTGAAGGAACTCTAACAGCCCTGTGGAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCGGTACCTTACACAGCTGAAGGAACTCTAACAGCCCTGTGGAGA  899

seq1  AGAATTCATCTTCTGCAAGACACTCACCTTCTTTACTGCGTGAAAACAGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATCTTCTGCAAGACACTCACCTTCTTTACTGCGTGAAAACAGT  949

seq1  CGAGAAGTGTAATATAGAAACTGCAGCTTCCATAGGCAGCATCTCTGAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGTGTAATATAGAAACTGCAGCTTCCATAGGCAGCATCTCTGAAA  999

seq1  TTCCCAAAGTGTTACTCCGTTAATGTTCTACACCACACTCACCCCAAGAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAGTGTTACTCCGTTAATGTTCTACACCACACTCACCCCAAGAA  1049

seq1  AAAGCTGACTAGAATTC  1053
      |||||||||||||||||
seq2  AAAGCTGACTAGAATTC  1066

seq1: chr13_64233634_64234584
seq2: B6Ng01-247G12.g_69_1021

seq1  GAATTCCAGGCATGTCAGGGTTACAAAGTGAGACCCTATTTCAAACCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCATGTCAGGGTTACAAAGTGAGACCCTATTTCAAACCATA  50

seq1  ATTTTAAAGAAACAGTAATTCATACTATGCTTTAAAAAAAAGCCTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGAAACAGTAATTCATACTATGCTTTAAAAAAAAGCCTGAAGG  100

seq1  CTGGGTACATGATGTAGCTCAGCAGTAGGATGCTTGCATAGTGTATATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACATGATGTAGCTCAGCAGTAGGATGCTTGCATAGTGTATATGA  150

seq1  TACTCTGAAGTCAACCCACAACCTCAAAAAAGCTGTCTGAGACAACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAAGTCAACCCACAACCTCAAAAAAGCTGTCTGAGACAACTGAG  200

seq1  ACAAAGAATGTCAGGTTGAGGGTTGTTTCTTTCTTTTTTTTTTGGATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATGTCAGGTTGAGGGTTGTTTCTTTCTTTTTTTTTTGGATCTA  250

seq1  TCCAATCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  300

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATC  350
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATCCATC  350

seq1  CATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCC-  399
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA  400

seq1  ---ATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  446
         ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  450

seq1  TATCATGGTTTTTGTATTTTTGATAGAGAAACAAATGATAAAAACTGTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGTTTTTGTATTTTTGATAGAGAAACAAATGATAAAAACTGTAA  500

seq1  GAATAAAGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  550

seq1  GCAGAGGCAAGTGGATCTCTTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAAGTGGATCTCTTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  600

seq1  GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACC  650

seq1  AAGAAGAAAAAAAAAAAAAAAAAAACTGTAAGAATGACCCATGTACTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAAAAAAAAAAAAAAAACTGTAAGAATGACCCATGTACTTTA  700

seq1  TGCTTTAAATTAAAATAAAATTTTATTCAAAGCATCTTTTAAAATTACAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAATTAAAATAAAATTTTATTCAAAGCATCTTTTAAAATTACAG  750

seq1  CATGTTTATTAATATGCTGTTAACTCTGCCAAACTACAACTTAGCCATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATTAATATGCTGTTAACTCTGCCAAACTACAACTTAGCCATAT  800

seq1  GAAGCATAAAACACTTCAAAAATCTGAATGTAACCACATTTTTAAAACAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAAAACACTTCAAAAATCTGAATGTAACCACATTTTTAAAACAA  850

seq1  AAAGCAGTCATAACACA-CCTCAAATTTTAGATGCCAATGTATTTTGTCC  895
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  AAAGCAGTCATAACACACCCTCCAATTTTAGATGCCAATGTATTTTGTCC  900

seq1  AAGTACATAGCTTATATCAAAACAAAATATATAACCCTTTAAAACATGGC  945
      |||||||||||||||||| |||||||||| ||||| |||| |||||||||
seq2  AAGTACATAGCTTATATC-AAACAAAATA-ATAACTCTTT-AAACATGGC  947

seq1  CAATGG  951
      | ||||
seq2  CCATGG  953