BAC Information

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BAC

Clone NameB6Ng01-249A09
Chromosome13 (Build37)
Map Location 78,343,683 - 78,344,814
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856
Downstream geneLOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249A09.bB6Ng01-249A09.g
ACCGA056951GA056952
length1,132623
definitionB6Ng01-249A09.b B6Ng01-249A09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccacacacgctcagctgctggactaggaaaagcagttgcaattt
tcaccctttcctcttctgttttcttttctgaatttcttcccttctcccta
tccactctgtttgcctcgcaccagtcagagccctgggaaagttaaattga
gtttgaaagtggcaactggaccagactgtggccctaaccttagcactgta
tgagtcttgttagtgcaggcagagagcaggggcatggtgctctgacttct
ccaggagccttgtgggaagaccaggggaatacctcagatccatagccttc
ttttttataattttcctctactttcctagttcccacagacctgttcaaca
cacagggtccagtgcaaaaaagaaagtgctcgggtggaggaattaagctg
tgaatttactatattctttatgagcttctagcatcgtggttggctgttaa
tcaccttttaaaaaagcttgccacacaacacttgatccctcagctaggca
tctggtaaatagctggtgggagaagggagaatctgaggggagggcagtct
gtggctttccatatgctaggaactcatgatccaagccccagagtctgaat
gtaaatggtctctttacccaatttacatagctttttaaatacaattttta
acagggtaggaagaaggctaacctattcttcactaatcctttggtctctt
tcacatttgcagtttgctttatagaatgacaccagatcatgcattttagg
ttattgttaagtcacactgaaaaaaaaagtagctttgtaaagacatttca
taaatctagctaaagagacactgaaacctaccaatggtcatattacagaa
aattctctggtacaccacttccatacccttaagtcgttcaaacagtatta
ttctgtttagagaaaccacaggacagaaatagcaccccttctcaagctca
tgtggagtgatgaacaagcttgcaaactcctgagagaaaggtcagtcctc
tgatcttgattcagattttcccagagagcttgtttttaaggtatcaaaca
attattctccctggcatgaagatttaagccaggaggaatacggtttagaa
gatgcatttacacatgatagtgtaacagacct

gaattctctgtttagttctataccccattttttatttgtttgtttggttt
ttgggtggttaacttcttgatttctttatatattttggatgctagtcttt
ttatcaaatgtggagttagtgaagatttttttctcccaatctgtaagttg
ccaatttgacctattgactatgtcccataacagaaaatgtggttcattta
cacaatggaatactactcagctattaagaatgaagacaacctgagttttg
caggcaaatggatggaactagaaaatatcatcctgagtgaggtaactcag
acccaaaagggcatgcatggtatgtactcactaataagtgaatattagcc
ccaaaaaagtacagaatacccaggatacaatccacaatacatgaaaaagt
taacaagctgaagaacccaagtgaggatgcctcaatcccacttgggagag
agaagaaagaaatcacaggagcagggagggagggtccttggtgggaaagg
agacaggtaagggaagaggggaacacaatcgggtattgggtaggggaaac
aggactgaagtcctatggaccagcagaaagaaggaaaacaggaaacctca
ggaggtatgaggtggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_78343683_78344814
seq2: B6Ng01-249A09.b_47_1178

seq1  GAATTCCCACACACGCTCAGCTGCTGGACTAGGAAAAGCAGTTGCAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACACACGCTCAGCTGCTGGACTAGGAAAAGCAGTTGCAATTT  50

seq1  TCACCCTTTCCTCTTCTGTTTTCTTTTCTGAATTTCTTCCCTTCTCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTTCCTCTTCTGTTTTCTTTTCTGAATTTCTTCCCTTCTCCCTA  100

seq1  TCCACTCTGTTTGCCTCGCACCAGTCAGAGCCCTGGGAAAGTTAAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGTTTGCCTCGCACCAGTCAGAGCCCTGGGAAAGTTAAATTGA  150

seq1  GTTTGAAAGTGGCAACTGGACCAGACTGTGGCCCTAACCTTAGCACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGTGGCAACTGGACCAGACTGTGGCCCTAACCTTAGCACTGTA  200

seq1  TGAGTCTTGTTAGTGCAGGCAGAGAGCAGGGGCATGGTGCTCTGACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTGTTAGTGCAGGCAGAGAGCAGGGGCATGGTGCTCTGACTTCT  250

seq1  CCAGGAGCCTTGTGGGAAGACCAGGGGAATACCTCAGATCCATAGCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCTTGTGGGAAGACCAGGGGAATACCTCAGATCCATAGCCTTC  300

seq1  TTTTTTATAATTTTCCTCTACTTTCCTAGTTCCCACAGACCTGTTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAATTTTCCTCTACTTTCCTAGTTCCCACAGACCTGTTCAACA  350

seq1  CACAGGGTCCAGTGCAAAAAAGAAAGTGCTCGGGTGGAGGAATTAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTCCAGTGCAAAAAAGAAAGTGCTCGGGTGGAGGAATTAAGCTG  400

seq1  TGAATTTACTATATTCTTTATGAGCTTCTAGCATCGTGGTTGGCTGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTACTATATTCTTTATGAGCTTCTAGCATCGTGGTTGGCTGTTAA  450

seq1  TCACCTTTTAAAAAAGCTTGCCACACAACACTTGATCCCTCAGCTAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTAAAAAAGCTTGCCACACAACACTTGATCCCTCAGCTAGGCA  500

seq1  TCTGGTAAATAGCTGGTGGGAGAAGGGAGAATCTGAGGGGAGGGCAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAAATAGCTGGTGGGAGAAGGGAGAATCTGAGGGGAGGGCAGTCT  550

seq1  GTGGCTTTCCATATGCTAGGAACTCATGATCCAAGCCCCAGAGTCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTCCATATGCTAGGAACTCATGATCCAAGCCCCAGAGTCTGAAT  600

seq1  GTAAATGGTCTCTTTACCCAATTTACATAGCTTTTTAAATACAATTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGTCTCTTTACCCAATTTACATAGCTTTTTAAATACAATTTTTA  650

seq1  ACAGGGTAGGAAGAAGGCTAACCTATTCTTCACTAATCCTTTGGTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTAGGAAGAAGGCTAACCTATTCTTCACTAATCCTTTGGTCTCTT  700

seq1  TCACATTTGCAGTTTGCTTTATAGAATGACACCAGATCATGCATTTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTGCAGTTTGCTTTATAGAATGACACCAGATCATGCATTTTAGG  750

seq1  TTATTGTTAAGTCACACTGAAAAAAAAAGTAGCTTTGTAAAGACATTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTAAGTCACACTGAAAAAAAAAGTAGCTTTGTAAAGACATTTCA  800

seq1  TAAATCTAGCTAAAGAGACACTGAAACCTACCAATGGTCATATTACAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAGCTAAAGAGACACTGAAACCTACCAATGGTCATATTACAGAA  850

seq1  AATTCTCTGGTACACCACTTCCATACCCTTAAGTCGTTCAAACAGTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTGGTACACCACTTCCATACCCTTAAGTCGTTCAAACAGTATTA  900

seq1  TTCTGTTTAGAGAAACCACAGGACAGAAATAGCA-CCCTTCTCAAGCTCA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTGTTTAGAGAAACCACAGGACAGAAATAGCACCCCTTCTCAAGCTCA  950

seq1  TGTGGAGTGATGAACAAGCTTGCAAACT-CTGAGAGAAAGGTCAGGTCCT  998
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TGTGGAGTGATGAACAAGCTTGCAAACTCCTGAGAGAAAGGTCA-GTCCT  999

seq1  CTGATCTTGATACAGATTTTCCCCAGAGAGCTTGTTTTAAAGGTATCAAA  1048
      ||||||||||| |||||||| ||||||||||||||||| |||||||| ||
seq2  CTGATCTTGATTCAGATTTT-CCCAGAGAGCTTGTTTTTAAGGTATC-AA  1047

seq1  ACAATTAGTCTCCCTTGGCATG-AGATTAAAGCCAGGGAGAATACAGTTA  1097
      ||||||| |||||| ||||||| ||||| ||||||||  |||||| ||| 
seq2  ACAATTATTCTCCC-TGGCATGAAGATTTAAGCCAGGAGGAATACGGTT-  1095

seq1  AAGAAGATGCATTTA-ACATGATAGTG-AACAGATCT  1132
       |||||||||||||| ||||||||||| |||||| ||
seq2  TAGAAGATGCATTTACACATGATAGTGTAACAGACCT  1132


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