BAC Information

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BAC

Clone NameB6Ng01-249L06
Chromosome13 (Build37)
Map Location 110,051,065 - 110,173,376
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream geneElovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L06.bB6Ng01-249L06.g
ACCGA057451GA057452
length2841,091
definitionB6Ng01-249L06.b B6Ng01-249L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,051,065 - 110,051,348)(110,172,283 - 110,173,376)
sequence
ccccaggctcctgcgcaggatgcttctgagtagcaacatccccaaacagc
gccgcttcacagtggcacatacatggtaaggtctgcaccgacccctgaaa
tgttagccataccgtatggttcagtgatttttgctcctcctgcagccttg
ggggtggggaggaagatctctattccactcctgtgatttatcggaagtaa
tctacctccatagtatgtcccaccgatgcccaagtcagggcaggaatcct
agagataggtaataggagtggttgaggtgggtgg

gaattcaacaggatattaagaattaggacaaaatattctaggaaaaacat
aatttttaagatgagctgtcacaattaatggaatgaggaagagatggcgc
agtatttcagaactcttgctgctctgccaaaggacctgagtgttgtttcc
aacactcaatcaagtagcttgcaactgcctctaagtccagagccagagaa
tatactctccccttctggcttctgtgagtagccacactcatgcacactca
tatagacacacatacagaaaaatttaaaaacaaacctttataagcaatga
attgagcaagagataaccaagttaattgaaagtagacaaggcctagagtc
agagaattgccatctccctacaacgataagtcattaaaatagaaataatt
caagatataatatttgacatttattcatttattaaacaacataaccaaag
atttaggtagtaatataattaacataatcgcaaaagttggagtaggttta
gaaaagaaatgttactatgttattttttgaaaatgttgaacaaattatat
agatatagatttagatatagatcattgcacacatacatatatcactaaat
cacattattttatcctaataatttggcttctgaaaattaatactaggaaa
agtaagtaactaagcaatatatattcatattcttaggaaagaaccatata
acatttgacagaagttctctttgtagacaggaataaaatgtttgcgcatg
cgcgcgcgcacgcacacgcgcgcgcgcacacacacacacacacacacatt
ttactcagaaatgtctgctactttcatgattttaaaagttattttcttag
cactatgcttacatgcttaataaacctttccatacataatttaatatata
caagaataaaaaaatctaaaatatatacattacaaaatgttgagagtcat
tgtataggtttaaggagtcttatagacattttaaaattaatttttatttt
attttgtgttttacatgcatgtattgtttgtgtgatgtgtcagatcctct
ggactggagtactgaatagttctcatctatcatgtgatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110051065_110051348
seq2: B6Ng01-249L06.b_51_334

seq1  CCCCAGGCTCCTGCGCAGGATGCTTCTGAGTAGCAACATCCCCAAACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCTCCTGCGCAGGATGCTTCTGAGTAGCAACATCCCCAAACAGC  50

seq1  GCCGCTTCACAGTGGCACATACATGGTAAGGTCTGCACCGACCCCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTTCACAGTGGCACATACATGGTAAGGTCTGCACCGACCCCTGAAA  100

seq1  TGTTAGCCATACCGTATGGTTCAGTGATTTTTGCTCCTCCTGCAGCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCATACCGTATGGTTCAGTGATTTTTGCTCCTCCTGCAGCCTTG  150

seq1  GGGGTGGGGAGGAAGATCTCTATTCCACTCCTGTGATTTATCGGAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGAGGAAGATCTCTATTCCACTCCTGTGATTTATCGGAAGTAA  200

seq1  TCTACCTCCATAGTATGTCCCACCGATGCCCAAGTCAGGGCAGGAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCATAGTATGTCCCACCGATGCCCAAGTCAGGGCAGGAATCCT  250

seq1  AGAGATAGGTAATAGGAGTGGTTGAGGTGGGTGG  284
      ||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGTAATAGGAGTGGTTGAGGTGGGTGG  284


seq1: chr13_110172283_110173376
seq2: B6Ng01-249L06.g_66_1156 (reverse)

seq1  AGCATCCACATGATAGATGAGAACTA-TCAGTAACTCCAGTTCCAGAGGA  49
      ||||| |||||||||||||||||||| ||||| ||||||| |||||||||
seq2  AGCAT-CACATGATAGATGAGAACTATTCAGT-ACTCCAG-TCCAGAGGA  47

seq1  TCTGACACCATCACACAAAC-ATACATGCATGTAAAACACAAAATTAAAA  98
      ||||||| |||||||||||| |||||||||||||||||||||||| ||| 
seq2  TCTGACA-CATCACACAAACAATACATGCATGTAAAACACAAAATAAAAT  96

seq1  TAAAATTAATTTTAAAATGTCTTATAAGACCTCCTTAAA-CTATACAATG  147
       |||||||||||||||||||| ||||||| ||||||||| ||||||||||
seq2  AAAAATTAATTTTAAAATGTC-TATAAGA-CTCCTTAAACCTATACAATG  144

seq1  ACTCTCAACATTTTGTAATGTATATATTTTAGATTTTTTTATTCTTGTAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAACATTTTGTAATGTATATATTTTAGATTTTTTTATTCTTGTAT  194

seq1  ATATTAAATTATGTATGGAAAGGTTTATTAAGCATGTAAGCATAGTGCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATTATGTATGGAAAGGTTTATTAAGCATGTAAGCATAGTGCTA  244

seq1  AGAAAATAACTTTTAAAATCATGAAAGTAGCAGACATTTCTGAGTAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAACTTTTAAAATCATGAAAGTAGCAGACATTTCTGAGTAAAAT  294

seq1  GTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGTGTGCGTGCGCGCGCGCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGTGTGCGTGCGCGCGCGCAT  344

seq1  GCGCAAACATTTTATTCCTGTCTACAAAGAGAACTTCTGTCAAATGTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAACATTTTATTCCTGTCTACAAAGAGAACTTCTGTCAAATGTTAT  394

seq1  ATGGTTCTTTCCTAAGAATATGAATATATATTGCTTAGTTACTTACTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTTTCCTAAGAATATGAATATATATTGCTTAGTTACTTACTTTT  444

seq1  CCTAGTATTAATTTTCAGAAGCCAAATTATTAGGATAAAATAATGTGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATTAATTTTCAGAAGCCAAATTATTAGGATAAAATAATGTGATT  494

seq1  TAGTGATATATGTATGTGTGCAATGATCTATATCTAAATCTATATCTATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATATATGTATGTGTGCAATGATCTATATCTAAATCTATATCTATA  544

seq1  TAATTTGTTCAACATTTTCAAAAAATAACATAGTAACATTTCTTTTCTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTTCAACATTTTCAAAAAATAACATAGTAACATTTCTTTTCTAA  594

seq1  ACCTACTCCAACTTTTGCGATTATGTTAATTATATTACTACCTAAATCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTCCAACTTTTGCGATTATGTTAATTATATTACTACCTAAATCTT  644

seq1  TGGTTATGTTGTTTAATAAATGAATAAATGTCAAATATTATATCTTGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGTTGTTTAATAAATGAATAAATGTCAAATATTATATCTTGAAT  694

seq1  TATTTCTATTTTAATGACTTATCGTTGTAGGGAGATGGCAATTCTCTGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTTTAATGACTTATCGTTGTAGGGAGATGGCAATTCTCTGAC  744

seq1  TCTAGGCCTTGTCTACTTTCAATTAACTTGGTTATCTCTTGCTCAATTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCTTGTCTACTTTCAATTAACTTGGTTATCTCTTGCTCAATTCA  794

seq1  TTGCTTATAAAGGTTTGTTTTTAAATTTTTCTGTATGTGTGTCTATATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATAAAGGTTTGTTTTTAAATTTTTCTGTATGTGTGTCTATATGA  844

seq1  GTGTGCATGAGTGTGGCTACTCACAGAAGCCAGAAGGGGAGAGTATATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGAGTGTGGCTACTCACAGAAGCCAGAAGGGGAGAGTATATTC  894

seq1  TCTGGCTCTGGACTTAGAGGCAGTTGCAAGCTACTTGATTGAGTGTTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTGGACTTAGAGGCAGTTGCAAGCTACTTGATTGAGTGTTGGA  944

seq1  AACAACACTCAGGTCCTTTGGCAGAGCAGCAAGAGTTCTGAAATACTGCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACTCAGGTCCTTTGGCAGAGCAGCAAGAGTTCTGAAATACTGCG  994

seq1  CCATCTCTTCCTCATTCCATTAATTGTGACAGCTCATCTTAAAAATTATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTCCTCATTCCATTAATTGTGACAGCTCATCTTAAAAATTATG  1044

seq1  TTTTTCCTAGAATATTTTGTCCTAATTCTTAATATCCTGTTGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAGAATATTTTGTCCTAATTCTTAATATCCTGTTGAATTC  1091


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