BAC Information

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BAC

Clone NameB6Ng01-250E13
Chromosome13 (Build37)
Map Location 28,386,219 - 28,387,232
singlet/doubletsinglet
Overlap genenone
Upstream genePrl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388
Downstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250E13.bB6Ng01-250E13.g
ACCGA057871GA057872
length1,0081,233
definitionB6Ng01-250E13.b B6Ng01-250E13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggttcaggaggtgaatcatttctgagggggtatatatactgaa
aggaattgagtgaaaaaccttcaggcagctgtctccctcgcttagccctg
cactgtgagatgggtgtatagaaatagtcttatttctaaatgttttatga
gctcatctccattggttcctaacagttgtgggcggtcacagaaatttatg
caaacctgatggcagaagagagatctggacactattaaaagtaaaagtgc
ttttatttttggcccaaacccactttttatccgtaaggaattggtcaatt
ccttgtccaaccacagacttttagattgtcagcaacctcccctcaggcag
aaacacttctttcaaaaatgagatttttctgaagtccctattatatgtct
tcgtgtctctctctctgcccatctgagcctccatacctggctcttcccta
atgacatcaagagactgcaatcagtggaaggctgtgattctcatcgcatt
cctgaagtggtctttgtggaagaatgcaggtcttttaagagaaacaattg
ctgcacaggaagaggcctggaggagtttgtgggctgggggaaaatggtag
atgtaaagctgtgtgtcagcacccagctctgttcctattaggatacaatt
tttaagctgtttttttttttttttaagaatgcaaaatcaggttagctact
acatgcaattctcaccctttccaagccttatcaccctcccaacattcaat
agccattcttaataccattacctctgggacaacatttaagcacgtccctg
caatctaacgacaagagacccgggaaaaggctatggtttaaaagcctggt
taaagataacacaaacagtaataagaacgttcttaggaaagaatcaggac
agctgcagctgaagcctagctacctgctgagggttgctaagcaacttggg
cctaccactgcccaaggtgtctactttacattaggatttttgaagggaag
aggggggg
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaaggatggaccatgtagagactgccatagccagggatccaccccataat
cagcatccaaaacgctgacaccattgcatacactagcaagattttattga
aaggacgcagatgtagctgttctcttgtgagactatgccggggcccagca
aacacaagaagtgggatgctcacagttcagctaatggatggatcataggg
gcttcccaatgggaggagctagagaaagtagcccaaggagcctaaaggga
tctgcaaccctcattagggtggaacaacattatggctaaccagttacccc
cggagcttcttgactctagcttgcataatatatcaaaagatggccttagt
tcgcccatcactggaaagagaggccattggaactggcaactcataatgcc
cagtacagggaaatacctatgtcatagggcagtggtgtggcaaggtgcat
gtggggtgatcgacattcaatcgagctatctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28386219_28387232
seq2: B6Ng01-250E13.b_48_1055

seq1  GAATTCAGGTTCAGGAGGTGAATCATTTCTGAGGGGGTATATATACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCAGGAGGTGAATCATTTCTGAGGGGGTATATATACTGAA  50

seq1  AGGAATTGAGTGAAAAACCTTCAGGCAGCTGTCTCCCTCGCTTAGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGAGTGAAAAACCTTCAGGCAGCTGTCTCCCTCGCTTAGCCCTG  100

seq1  CACTGTGAGATGGGTGTATAGAAATAGTCTTATTTCTAAATGTTTTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAGATGGGTGTATAGAAATAGTCTTATTTCTAAATGTTTTATGA  150

seq1  GCTCATCTCCATTGGTTCCTAACAGTTGTGGGCGGTCACAGAAATTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCTCCATTGGTTCCTAACAGTTGTGGGCGGTCACAGAAATTTATG  200

seq1  CAAACCTGATGGCAGAAGAGAGATCTGGACACTATTAAAAGTAAAAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGATGGCAGAAGAGAGATCTGGACACTATTAAAAGTAAAAGTGC  250

seq1  TTTTATTTTTGGCCCAAACCCACTTTTTATCCGTAAGGAATTGGTCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTGGCCCAAACCCACTTTTTATCCGTAAGGAATTGGTCAATT  300

seq1  CCTTGTCCAACCACAGACTTTTAGATTGTCAGCAACCTCCCCTCAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCAACCACAGACTTTTAGATTGTCAGCAACCTCCCCTCAGGCAG  350

seq1  AAACACTTCTTTCAAAAATGAGATTTTTCTGAAGTCCCTATTATATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTCTTTCAAAAATGAGATTTTTCTGAAGTCCCTATTATATGTCT  400

seq1  TCGTGTCTCTCTCTCTGCCCATCTGAGCCTCCATACCTGGCTCTTCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTCTCTCTCTCTGCCCATCTGAGCCTCCATACCTGGCTCTTCCCTA  450

seq1  ATGACATCAAGAGACTGCAATCAGTGGAAGGCTGTGATTCTCATCGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCAAGAGACTGCAATCAGTGGAAGGCTGTGATTCTCATCGCATT  500

seq1  CCTGAAGTGGTCTTTGTGGAAGAATGCAGGTCTTTTAAGAGAAACAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTGGTCTTTGTGGAAGAATGCAGGTCTTTTAAGAGAAACAATTG  550

seq1  CTGCACAGGAAGAGGCCTGGAGGAGTTTGTGGGCTGGGGGAAAATGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGGAAGAGGCCTGGAGGAGTTTGTGGGCTGGGGGAAAATGGTAG  600

seq1  ATGTAAAGCTGTGTGTCAGCACCCAGCTCTGTTCCTATTAGGATACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGCTGTGTGTCAGCACCCAGCTCTGTTCCTATTAGGATACAATT  650

seq1  TTTAAGCTGTTTTTTTTTTTTTTTAAGAATGCAAAATCAGGTTAGCTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTGTTTTTTTTTTTTTTTAAGAATGCAAAATCAGGTTAGCTACT  700

seq1  ACATGCAATTCTCACCCTTTCCAAGCCTTATCACCCTCCCAACATTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAATTCTCACCCTTTCCAAGCCTTATCACCCTCCCAACATTCAAT  750

seq1  AGCCATTCTTAATACCATTACCTCTGGGACAACATTTAAGCAGGTCCCTG  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCCATTCTTAATACCATTACCTCTGGGACAACATTTAAGCACGTCCCTG  800

seq1  CAATCTAACGACAAGAGACCCGGGAAAAGGCTATGGTTTAAAAGCCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAACGACAAGAGACCCGGGAAAAGGCTATGGTTTAAAAGCCTGGT  850

seq1  TAAAGATTAACACAAACAGTAATAAGAAGGTTCTTAGGAAAGAATCAGGA  900
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAGA-TAACACAAACAGTAATAAGAACGTTCTTAGGAAAGAATCAGGA  899

seq1  CAGCTGCAGCTGAAGCCTAGCTACCTGCTGAGGGTTGCTAAGCAACTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGCTGAAGCCTAGCTACCTGCTGAGGGTTGCTAAGCAACTTGG  949

seq1  GCCTACCACTGCCCCAAGGGTGTCTTACTTTACAATTAGGATTTTTGAAG  1000
      ||||||||||||||  | |||||| |||||||| ||||||||||||||| 
seq2  GCCTACCACTGCCC--AAGGTGTC-TACTTTAC-ATTAGGATTTTTGAA-  994

seq1  GGGAAGAGGGGGGG  1014
      ||||||||||||||
seq2  GGGAAGAGGGGGGG  1008