BAC Information

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BAC

Clone NameB6Ng01-250N01
Chromosome13 (Build37)
Map Location 113,102,285 - 113,227,157
singlet/doubletdoublet
Overlap geneAnkrd55, LOC100040725
Upstream geneLOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175
Downstream geneIl6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250N01.bB6Ng01-250N01.g
ACCGA058254GA058255
length1,092478
definitionB6Ng01-250N01.b B6Ng01-250N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,102,285 - 113,103,384)(113,226,674 - 113,227,157)
sequence
gaattcttggtgctaaataggtagatgatagaaaatagacagatacatac
agaaagatacatggaggataaagggggcatgtgttgttcaattatataga
gctatttggtgatgttaagtggatttgtgaccttttgttgaaaagaaact
cttctgccctcattttagatcccaaaggatgatcaaccattcttttcttt
gtagcagctccaaggtaagactagggatccacactcaccatggtttagac
tgagcatttctacggagcctctaagagtcttctcgttcttaattgctagt
ttcctagcagatcctaagctaaatgaactcggaagctcactttgatcagc
cttgtaggacacctcctttccttctcccttcttcatctctcactttaagt
tccttcttagcatacttcctggatggtcttctagccaagactatctatct
ttaacaggatgtttgtgttcttgtggcatgacctggaacctggctgtcaa
gctctagtaactccaatgtctttctctgtcactccatcactgttacttct
gactgcgtaggagtccaggataatttcattgtagcactgtttacacgagg
gccctttgaaaccaagaccattcacaatagaaaaagaagaataaagtaca
cagagatgaacttaacctagaaggcaagggacttgcacacccaaaactac
aatgaggtgctcaagtaaattaaagaagatgccaacaaatgagaagacat
ccagggtttcctgaactacaaaggcatatttagatgtcactggttctcgg
agaagtacaatctctgacaaaaactcaatgacttttttatagacatggga
tatttcattcaaaaatgtcatttggaatcctaatgatctcccagacgttt
cagacagttttacaaaaaacaaaattagagagaggcctcaacttttcctg
gttttacaaattataaagttacagtaaccaaaaagtgtggtactggcatg
aaggtagtagtcatacagattaatgagtagaactgaaagtcaagatgatc
atatatctatggctagctagttttagaagggtgatagcatgt
aaataaatgtctactcataccaggacatacagcgagcattttttaaagct
cttaagatcatcttcatgcagctgaagacatagaatgtgcccaatacata
tttgcttattgtttcaccagcttttaccctttatacagaaaaagggtggt
tcattttgtgtgagttttattgattccgaagcagcgctattttcttttgg
ttttgttttggtgctggggtttgaactcatgcttagcacgtgtactggga
tgagcaatcccccagcctgagcagcattaacatttattattcttgacgct
cactcagagtgaccagctcttaaactgccaacaatgtcaacagacgacac
tgaagtaacatcagagggaagcgatctgcaattgactacttctctgacct
catctgtaaaaggtgtgacccagaaatatttttttcaaacatcttcttac
atttatgtgtatgtgtgtgtgtacgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113102285_113103384
seq2: B6Ng01-250N01.b_45_1136

seq1  GAATTCTTGGTGCTAAATAGGTAGATGATAGAAAATAGACAGATACATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTGCTAAATAGGTAGATGATAGAAAATAGACAGATACATAC  50

seq1  AGAAAGATACATGGAGGATAAAGGGGGCATGTGTTGTTCAATTATATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATACATGGAGGATAAAGGGGGCATGTGTTGTTCAATTATATAGA  100

seq1  GCTATTTGGTGATGTTAAGTGGATTTGTGACCTTTTGTTGAAAAGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGGTGATGTTAAGTGGATTTGTGACCTTTTGTTGAAAAGAAACT  150

seq1  CTTCTGCCCTCATTTTAGATCCCAAAGGATGATCAACCATTCTTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCCTCATTTTAGATCCCAAAGGATGATCAACCATTCTTTTCTTT  200

seq1  GTAGCAGCTCCAAGGTAAGACTAGGGATCCACACTCACCATGGTTTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGCTCCAAGGTAAGACTAGGGATCCACACTCACCATGGTTTAGAC  250

seq1  TGAGCATTTCTACGGAGCCTCTAAGAGTCTTCTCGTTCTTAATTGCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTCTACGGAGCCTCTAAGAGTCTTCTCGTTCTTAATTGCTAGT  300

seq1  TTCCTAGCAGATCCTAAGCTAAATGAACTCGGAAGCTCACTTTGATCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCAGATCCTAAGCTAAATGAACTCGGAAGCTCACTTTGATCAGC  350

seq1  CTTGTAGGACACCTCCTTTCCTTCTCCCTTCTTCATCTCTCACTTTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGACACCTCCTTTCCTTCTCCCTTCTTCATCTCTCACTTTAAGT  400

seq1  TCCTTCTTAGCATACTTCCTGGATGGTCTTCTAGCCAAGACTATCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTAGCATACTTCCTGGATGGTCTTCTAGCCAAGACTATCTATCT  450

seq1  TTAACAGGATGTTTGTGTTCTTGTGGCATGACCTGGAACCTGGCTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGATGTTTGTGTTCTTGTGGCATGACCTGGAACCTGGCTGTCAA  500

seq1  GCTCTAGTAACTCCAATGTCTTTCTCTGTCACTCCATCACTGTTACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTAACTCCAATGTCTTTCTCTGTCACTCCATCACTGTTACTTCT  550

seq1  GACTGCGTAGGAGTCCAGGATAATTTCATTGTAGCACTGTTTACACGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGTAGGAGTCCAGGATAATTTCATTGTAGCACTGTTTACACGAGG  600

seq1  GCCCTTTGAAACCAAGACCATTCACAATAGAAAAAGAAGAATAAAGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGAAACCAAGACCATTCACAATAGAAAAAGAAGAATAAAGTACA  650

seq1  CAGAGATGAACTTAACCTAGAAGGCAAGGGACTTGCACACCCAAAACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGAACTTAACCTAGAAGGCAAGGGACTTGCACACCCAAAACTAC  700

seq1  AATGAGGTGCTCAAGTAAATTAAAGAAGATGCCAACAAATGAGAAGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTGCTCAAGTAAATTAAAGAAGATGCCAACAAATGAGAAGACAT  750

seq1  CCAGGGTTTCCTGAACTACAAAGGCATATTTAGATGTCACTGGTTCTCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTTCCTGAACTACAAAGGCATATTTAGATGTCACTGGTTCTCGG  800

seq1  AGAAGTACAATCTCTGACAAAAACTCAATGACTTTTTTATAGACATGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACAATCTCTGACAAAAACTCAATGACTTTTTTATAGACATGGGA  850

seq1  TATTTCATTCAAAAATGTCATTTGGAATCCTAATGATCTCCCAGACGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTCAAAAATGTCATTTGGAATCCTAATGATCTCCCAGACGTTT  900

seq1  CAGACAGTTTTACAAAAAAACAAAATTAGAGAGAGGCCTC-ACCTTTCCT  949
      ||||||||||||| |||||||||||||||||||||||||| || ||||||
seq2  CAGACAGTTTTAC-AAAAAACAAAATTAGAGAGAGGCCTCAACTTTTCCT  949

seq1  GGTTTTACAAATTATAAAGTTACAGTAACCAAAAAGTGTGGTACTGGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACAAATTATAAAGTTACAGTAACCAAAAAGTGTGGTACTGGCAT  999

seq1  GAAGGTAGTAGTCATACAGATTAATGGAGTAGAACTGAAAGTCCAAAGAT  1049
      ||||||||||||||||||||||||| |||||||||||||||||  |||||
seq2  GAAGGTAGTAGTCATACAGATTAAT-GAGTAGAACTGAAAGTC--AAGAT  1046

seq1  GATTCCATATATCTATGGCTAGCTAGTTTTTAAGAAGGGTGATAGCCATG  1099
      |||  |||||||||||||||||||||||||  ||||||||||||| ||||
seq2  GAT--CATATATCTATGGCTAGCTAGTTTT--AGAAGGGTGATAG-CATG  1091

seq1  T  1100
      |
seq2  T  1092

seq1: chr13_113226674_113227157
seq2: B6Ng01-250N01.g_72_555 (reverse)

seq1  ACACGTACACACACACATACACATAAATGTAAGAAGATGTTTGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTACACACACACATACACATAAATGTAAGAAGATGTTTGAAAAAAA  50

seq1  TATTTCTGGGTCACACCTTTTACAGATGAGGTCAGAGAAGTAGTCAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGGTCACACCTTTTACAGATGAGGTCAGAGAAGTAGTCAATTG  100

seq1  CAGATCGCTTCCCTCTGATGTTACTTCAGTGTCGTCTGTTGACATTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCGCTTCCCTCTGATGTTACTTCAGTGTCGTCTGTTGACATTGTTG  150

seq1  GCAGTTTAAGAGCTGGTCACTCTGAGTGAGCGTCAAGAATAATAAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTAAGAGCTGGTCACTCTGAGTGAGCGTCAAGAATAATAAATGTT  200

seq1  AATGCTGCTCAGGCTGGGGGATTGCTCATCCCAGTACACGTGCTAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGCTCAGGCTGGGGGATTGCTCATCCCAGTACACGTGCTAAGCAT  250

seq1  GAGTTCAAACCCCAGCACCAAAACAAAACCAAAAGAAAATAGCGCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAACCCCAGCACCAAAACAAAACCAAAAGAAAATAGCGCTGCTT  300

seq1  CGGAATCAATAAAACTCACACAAAATGAACCACCCTTTTTCTGTATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATCAATAAAACTCACACAAAATGAACCACCCTTTTTCTGTATAAAG  350

seq1  GGTAAAAGCTGGTGAAACAATAAGCAAATATGTATTGGGCACATTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAGCTGGTGAAACAATAAGCAAATATGTATTGGGCACATTCTATG  400

seq1  TCTTCAGCTGCATGAAGATGATCTTAAGAGCTTTAAAAAATGCTCGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCTGCATGAAGATGATCTTAAGAGCTTTAAAAAATGCTCGCTGT  450

seq1  ATGTCCTGGTATGAGTAGACATTTATTTGAATTC  484
      ||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGGTATGAGTAGACATTTATTTGAATTC  484