BAC Information

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BAC

Clone NameB6Ng01-251J18
Chromosome13 (Build37)
Map Location 45,214,346 - 45,365,782
singlet/doubletdoublet
Overlap geneLOC100039502, LOC667204, LOC100039533
Upstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1
Downstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251J18.bB6Ng01-251J18.g
ACCGA058821GA058822
length1,0451,039
definitionB6Ng01-251J18.b B6Ng01-251J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,364,744 - 45,365,782)(45,214,346 - 45,215,359)
sequence
gaattcaaggccaccaggttggtaacgttctctgtgttttcgttaacagg
actcacttttggcaaataaactggacatggggtggggtgaggcaggtgaa
agacaaaaatttgcttcagtaaggctagcttatgtagctcttctgtgtgc
tatcccaatcatgcgccctcccccctgcctctggttcaaggacaccttct
cttcacttctggtcctcagttgccttcagcaaaacggaatcatttttcca
gggcggcatgttatggggtgacacatcctggtatccttcagctctactgg
tgggctccagggagcttatgcaaacccatctgaggtctacctctctaagc
atcgcagactgtcagatctcctttcccctcccaggtcacagcagatcagg
aaacagagtccctgatgccactcagggccctcaacttcaaaatcatggca
ccctgcctctcatcgacactgagcccaaggcagcagggccaccccactgt
caccacctctactggctgctctcggatctgtcttcagacagatctaagca
ccagacacattgattcctaaccttacaacgaagcacttccttcaaatctg
tgcttaatgcagaaccatttattcttaatgccccaaagccaggcaccaag
gcacagaagcccattctgacaacccattgtgtccgcacagagttcaaaag
tcttttctgaacctccgaagctaaaagggatattctgatctaaagtcatt
cttgcacagttttccttcccttaagcctagactgcctgaaaaatacaacc
atctgaccatctctaatcttagtgtgagattagcaggcctataaaaaaaa
agtgtgggtagaaggggtgacctccctgtgttcaacttgccacgaatatg
ataaaggctttgggctcactgtgggccttcagatgctgactcacgctttc
ctcagtaccctttgctgcagctggcatgaagctaatacccagtggcttcg
gcaggtaaggtatgggccaaagttatgggggggaagggggagttc
gaattcaataggcctgccttatcacccagtggcaggcagtatcatgtgga
atgagcccagtggatcttagagtgctcccaagtgagcactgtactcctca
gagtgcccgagtgaggaaggattgaactgctcaaccagaaacacgaggct
tggagatctgctaactaaatctcattttcaggaaaagaattccagaacta
gaagagtcatattttctgacaaaatatgtattaacttgggcttggttaat
atccaagtggaggagtattggctctttaagtctagtgttatgataaataa
ctgggtctgtgataaagactttggactcgtcatgaccccttgttctcaaa
agtcctggggggaggttaagaagccaggaaggattctgggtattcttaca
ccttgaggtcagaaggaggcttgaagctcaggtgacaaaggagtggcaca
actacggaggcaggtggacagcagcaaagatcagtgagaagaccctaaga
aaggttaagccattgttccgaatgctgctgaaaggtacaaccctgacctt
tggatccgcagcaaggggactattgtacagagcttggctgtctctgcccc
tggtgctgggagggatactctaacttcttggaactcccaaggaagggggt
gaagggagtgacttcatcgttcatggttggtacaggagtctgtaggagac
agggggatgagaagacagcaactcattcgatgtactgagggtactgtcgg
tctgtgtctccttatcttaagtagtttctgccatgtgcagagtattttgt
ttcaagatcccagtggagtgctttacactctgcataggtaccaaacttct
atagacactaacgggattccaccataagatgcatctttactataaaatct
gaatggtacattatctttcattaaagggattggacccacgataattttat
ttttatatcttaaggacctcaatattcgggtcttgttttctctcctcatt
aaacctgagaaactttcattaatttatttcaccatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45364744_45365782
seq2: B6Ng01-251J18.b_44_1088 (reverse)

seq1  GAACTCCCCCT---CCCCCATAACTTTGG-CCATACCTTACCTGCCGAAG  46
      |||||||||||   ||||||||||||||| ||||||||||||||||||||
seq2  GAACTCCCCCTTCCCCCCCATAACTTTGGCCCATACCTTACCTGCCGAAG  50

seq1  CCACTGGGTATTAGCTTCCATGCCAGCTGCAGGCAAAGGTACTGAGG-AA  95
      ||||||||||||||||| ||||||||||||||  || |||||||||| ||
seq2  CCACTGGGTATTAGCTT-CATGCCAGCTGCAGCAAAGGGTACTGAGGAAA  99

seq1  GCGTGAGTCAGCATCTGAAGGCCCACAGTGAGCCCAAAGCC-TTATCATA  144
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCGTGAGTCAGCATCTGAAGGCCCACAGTGAGCCCAAAGCCTTTATCATA  149

seq1  TTCGTGGCAAGTTGAACACAGGGAGGTCACCCCTTCTACCCACAC-TTTT  193
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCGTGGCAAGTTGAACACAGGGAGGTCACCCCTTCTACCCACACTTTTT  199

seq1  TTTTATAGGCCTGCTAATCTCACACTAAGATTAGAGATGGTCAGATGGTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGGCCTGCTAATCTCACACTAAGATTAGAGATGGTCAGATGGTT  249

seq1  GTATTTTTCAGGCAGTCTAGGCTTAAGGGAAGGAAAACTGTGCAAGAATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTCAGGCAGTCTAGGCTTAAGGGAAGGAAAACTGTGCAAGAATG  299

seq1  ACTTTAGATCAGAATATCCCTTTTAGCTTCGGAGGTTCAGAAAAGACTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATCAGAATATCCCTTTTAGCTTCGGAGGTTCAGAAAAGACTTT  349

seq1  TGAACTCTGTGCGGACACAATGGGTTGTCAGAATGGGCTTCTGTGCCTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTGTGCGGACACAATGGGTTGTCAGAATGGGCTTCTGTGCCTTG  399

seq1  GTGCCTGGCTTTGGGGCATTAAGAATAAATGGTTCTGCATTAAGCACAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGCTTTGGGGCATTAAGAATAAATGGTTCTGCATTAAGCACAGA  449

seq1  TTTGAAGGAAGTGCTTCGTTGTAAGGTTAGGAATCAATGTGTCTGGTGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGAAGTGCTTCGTTGTAAGGTTAGGAATCAATGTGTCTGGTGCT  499

seq1  TAGATCTGTCTGAAGACAGATCCGAGAGCAGCCAGTAGAGGTGGTGACAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTGTCTGAAGACAGATCCGAGAGCAGCCAGTAGAGGTGGTGACAG  549

seq1  TGGGGTGGCCCTGCTGCCTTGGGCTCAGTGTCGATGAGAGGCAGGGTGCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGCCCTGCTGCCTTGGGCTCAGTGTCGATGAGAGGCAGGGTGCC  599

seq1  ATGATTTTGAAGTTGAGGGCCCTGAGTGGCATCAGGGACTCTGTTTCCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGAAGTTGAGGGCCCTGAGTGGCATCAGGGACTCTGTTTCCTG  649

seq1  ATCTGCTGTGACCTGGGAGGGGAAAGGAGATCTGACAGTCTGCGATGCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGTGACCTGGGAGGGGAAAGGAGATCTGACAGTCTGCGATGCTT  699

seq1  AGAGAGGTAGACCTCAGATGGGTTTGCATAAGCTCCCTGGAGCCCACCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTAGACCTCAGATGGGTTTGCATAAGCTCCCTGGAGCCCACCAG  749

seq1  TAGAGCTGAAGGATACCAGGATGTGTCACCCCATAACATGCCGCCCTGGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGAAGGATACCAGGATGTGTCACCCCATAACATGCCGCCCTGGA  799

seq1  AAAATGATTCCGTTTTGCTGAAGGCAACTGAGGACCAGAAGTGAAGAGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTCCGTTTTGCTGAAGGCAACTGAGGACCAGAAGTGAAGAGAA  849

seq1  GGTGTCCTTGAACCAGAGGCAGGGGGGAGGGCGCATGATTGGGATAGCAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTTGAACCAGAGGCAGGGGGGAGGGCGCATGATTGGGATAGCAC  899

seq1  ACAGAAGAGCTACATAAGCTAGCCTTACTGAAGCAAATTTTTGTCTTTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGCTACATAAGCTAGCCTTACTGAAGCAAATTTTTGTCTTTCA  949

seq1  CCTGCCTCACCCCACCCCATGTCCAGTTTATTTGCCAAAAGTGAGTCCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCACCCCACCCCATGTCCAGTTTATTTGCCAAAAGTGAGTCCTG  999

seq1  TTAACGAAAACACAGAGAACGTTACCAACCTGGTGGCCTTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGAAAACACAGAGAACGTTACCAACCTGGTGGCCTTGAATTC  1045

seq1: chr13_45214346_45215359
seq2: B6Ng01-251J18.g_67_1105

seq1  GAATTCAATAGGCCTGCCTTATCACCCAGTGGCAGGCAGTATCATGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGCCTGCCTTATCACCCAGTGGCAGGCAGTATCATGTGGA  50

seq1  ATGAGCCCAGTGGATCTTAGAGTGCTCCCAAGTGAGCACTGTACTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCAGTGGATCTTAGAGTGCTCCCAAGTGAGCACTGTACTCCTCA  100

seq1  GAGTGCCCGAGTGAGGAAGGATTGAACTGCTCAACCAGAAACACGAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCGAGTGAGGAAGGATTGAACTGCTCAACCAGAAACACGAGGCT  150

seq1  TGGAGATCTGCTAACTAAATCTCATTTTCAGGAAAAGAATTCCAGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATCTGCTAACTAAATCTCATTTTCAGGAAAAGAATTCCAGAACTA  200

seq1  GAAGAGTCATATTTTCTGACAAAATATGTATTAACTTGGGCTTGGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCATATTTTCTGACAAAATATGTATTAACTTGGGCTTGGTTAAT  250

seq1  ATCCAAGTGGAGGAGTATTGGCTCTTTAAGTCTAGTGTTATGATAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTGGAGGAGTATTGGCTCTTTAAGTCTAGTGTTATGATAAATAA  300

seq1  CTGGGTCTGTGATAAAGACTTTGGACTCGTCATGACCCCTTGTTCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTGTGATAAAGACTTTGGACTCGTCATGACCCCTTGTTCTCAAA  350

seq1  AGTCCTGGGGGGAGGTTAAGAAGCCAGGAAGGATTCTGGGTATTCTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGGGGGAGGTTAAGAAGCCAGGAAGGATTCTGGGTATTCTTACA  400

seq1  CCTTGAGGTCAGAAGGAGGCTTGAAGCTCAGGTGACAAAGGAGTGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGTCAGAAGGAGGCTTGAAGCTCAGGTGACAAAGGAGTGGCACA  450

seq1  ACTACGGAGGCAGGTGGACAGCAGCAAAGATCAGTGAGAAGACCCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGGAGGCAGGTGGACAGCAGCAAAGATCAGTGAGAAGACCCTAAGA  500

seq1  AAGGTTAAGCCATTGTTCCGAATGCTGCTGAAAGGTACAACCCTGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAGCCATTGTTCCGAATGCTGCTGAAAGGTACAACCCTGACCTT  550

seq1  TGGATCCGCAGCAAGGGGACTATTGTACAGAGCTTGGCTGTCTCTGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCGCAGCAAGGGGACTATTGTACAGAGCTTGGCTGTCTCTGCCCC  600

seq1  TGGTGCTGGGAGGGATACTCTAACTTCTTGGAACTCCCAAGGAAGGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGGGAGGGATACTCTAACTTCTTGGAACTCCCAAGGAAGGGGGT  650

seq1  GAAGGGAGTGACTTCATCGTTCATGGTTGGTACAGGAGTCTGTAGGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGTGACTTCATCGTTCATGGTTGGTACAGGAGTCTGTAGGAGAC  700

seq1  AGGGGGATGAGAAGACAGCAACTCATTCGATGTACTGAGGGTACTGTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGATGAGAAGACAGCAACTCATTCGATGTACTGAGGGTACTGTCGG  750

seq1  TCTGTGTCTCC-TATCTTAAGTAG-TTCTGCCATGTGCAGAGTA-TTTGT  797
      ||||||||||| |||||||||||| ||||||||||||||||||| |||||
seq2  TCTGTGTCTCCTTATCTTAAGTAGTTTCTGCCATGTGCAGAGTATTTTGT  800

seq1  TCCAAGATCCCAGT-GAGTGC-TTACACTCTGCATA-GTACCAAAC-TCT  843
      | |||||||||||| |||||| |||||||||||||| ||||||||| |||
seq2  TTCAAGATCCCAGTGGAGTGCTTTACACTCTGCATAGGTACCAAACTTCT  850

seq1  ATAGACACTA--CGGATTCCACCAT-ACATGCATC-TTACTATAAAATCT  889
      ||||||||||   |||||||||||| | ||||||| ||||||||||||||
seq2  ATAGACACTAACGGGATTCCACCATAAGATGCATCTTTACTATAAAATCT  900

seq1  G-ATTGTACATTATC-TTCATT-AAGGGATTG--ACCACGATAATTT--A  932
      | || |||||||||| |||||| |||||||||   ||||||||||||   
seq2  GAATGGTACATTATCTTTCATTAAAGGGATTGGACCCACGATAATTTTAT  950

seq1  TTTTATATCTTAGTGACTTCAATA-TCTGGTCTTGTTTTTTC-CCTCATT  980
      ||||||||||||  ||| |||||| || ||||||||||| || |||||||
seq2  TTTTATATCTTAAGGACCTCAATATTCGGGTCTTGTTTTCTCTCCTCATT  1000

seq1  -AAGCTGAG-AACTTT-ATTTATTTATTT--CCATTTAT  1014
       || ||||| |||||| ||| ||||||||  ||||||||
seq2  AAACCTGAGAAACTTTCATTAATTTATTTCACCATTTAT  1039